• Title/Summary/Keyword: Delineation of Region

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Phylogenetic Analysis of Pectobacterium Species Using the 16S-23S rRNA Intergenic Spacer Regions

  • Kwon, Soon-Wo;Cheun, Meung-Sook;Kim, Sang-Hee;Lim, Chun-Keun
    • The Plant Pathology Journal
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    • v.16 no.2
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    • pp.98-104
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    • 2000
  • For the taxonomic evaluaition, 15 strains of the genus Pectobacterium and Erwinia were analyzed for 16S-23S rDNA intergenic spacer regions (ISRs). These species contained two types of ISRs, large and small ISRs. Large ISRs were on the range of 474-569 bp size, and coding transfer $\textrm{RNA}^{11e}$($\textrm{tRNA}^{11e}$) and $\textrm{tRNA}^{Ala}$. Small ISRs were 354-459 bp in length and coding $\textrm{tRNA}^{Glu}$. The sequence variations of two ISRs among species and strains were very high as compared with 16S rRNA gene sequences. By phylogenetic trees on the basis of two ISRs, Pectobacterium ere differentiated into P. carotovorum-P. cactiaidum group and P. chrysanthemi group. However, the taxonomic position of E. cypripedii and E. rhapontici, which were not clear on taxonomic delineation between Pectobacterium and Erwinia, were not clearly resolved on the basis of ISRs.

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A study on the identification of hub cities and delineation of their catchment areas based on regional interactions (지역 거점도시 식별 및 상호작용에 따른 영향권역 설정에 관한 연구)

  • Kim, Dohyeong;Woo, Myungje
    • Journal of Korea Planning Association
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    • v.53 no.7
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    • pp.5-22
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    • 2018
  • While the competitiveness of small and medium sized cities has become important for balanced development at the national scale, they have experienced continuous decline in population and employment, particularly those in non-capital regions. In addition, some of small and medium sized cities have been classified into shrinking cities that have declined due to their long-term structural reasons. To address these issues, a regional approach, by which a hub city and its surrounding small and medium sized cities can collaborate has been suggested. Given this background, the purpose of this study is to identify and delineate hub cities and their impact areas by using travel data as a functional network index. This study uses a centrality index to identify the hub cities of small and medium sized cities and Markov-chain model and cluster analysis to delineate regional boundaries. The mean first passage time (MFPT) generated from the Markov-chain model can be interpreted as functional distance of each region. The study suggests a methodological approach delineating the boundaries of regions incorporating functional relationships of hub cities and their impact areas, and provides 59 hub cities and their impact areas. The results also provide policy implications for regional spatial planning that addresses appropriate planning boundaries of regions for enhancing the economic competitiveness of small and medium sized cities and ensuring services for shrinking cities.

Implementation of Digital Image Processing for Coastline Extraction from Synthetic Aperture Radar Imagery

  • Lee, Dong-Cheon;Seo, Su-Young;Lee, Im-Pyeong;Kwon, Jay-Hyoun;Tuell, Grady H.
    • Journal of the Korean Society of Surveying, Geodesy, Photogrammetry and Cartography
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    • v.25 no.6_1
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    • pp.517-528
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    • 2007
  • Extraction of the coastal boundary is important because the boundary serves as a reference in the demarcation of maritime zones such as territorial sea, contiguous zone, and exclusive economic zone. Accurate nautical charts also depend on well established, accurate, consistent, and current coastline delineation. However, to identify the precise location of the coastal boundary is a difficult task due to tidal and wave motions. This paper presents an efficient way to extract coastlines by applying digital image processing techniques to Synthetic Aperture Radar (SAR) imagery. Over the past few years, satellite-based SAR and high resolution airborne SAR images have become available, and SAR has been evaluated as a new mapping technology. Using remotely sensed data gives benefits in several aspects, especially SAR is largely unaffected by weather constraints, is operational at night time over a large area, and provides high contrast between water and land areas. Various image processing techniques including region growing, texture-based image segmentation, local entropy method, and refinement with image pyramid were implemented to extract the coastline in this study. Finally, the results were compared with existing coastline data derived from aerial photographs.

Taxonomy and phylogeny of the genus Cryptomonas (Cryptophyceae, Cryptophyta) from Korea

  • Choi, Bomi;Son, Misun;Kim, Jong Im;Shin, Woongghi
    • ALGAE
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    • v.28 no.4
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    • pp.307-330
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    • 2013
  • The genus Cryptomonas is easily recognized by having two flagella, green brownish color, and a swaying behavior. They have relatively simple morphology, and limited diagnostic characters, which present a major difficulty in differentiating between species of the genus. To understand species delineation and phylogenetic relationships among Cryptomonas species, the nuclear-encoded internal transcribed spacer 2 (ITS2), partial large subunit (LSU) and small subunit ribosomal DNA (rDNA), and chloroplast-encoded psbA and LSU rDNA sequences were determined and used for phylogenetic analyses, using Bayesian and maximum likelihood methods. In addition, nuclear-encoded ITS2 sequences were predicted to secondary structures, and were used to determine nine species and four unidentified species from 47 strains. Sequences of helix I, II, and IIIb in ITS2 secondary structure were very useful for the identification of Cryptomonas species. However, the helix IV was the most variable region across species in alignment. The phylogenetic tree showed that fourteen species were monophyletic. However, some strains of C. obovata had chloroplasts with pyrenoid while others were without pyrenoid, which used as a key character in few species. Therefore, classification systems depending solely on morphological characters are inadequate, and require the use of molecular data.

Study on the Bonding Interface in Directly Bonded Si-Si and Si-$SiO_2$ Si Wafer Pairs (직접 접합된 Si-Si, Si-$SiO_2$/Si기판쌍의 접합 계면에 관한 연구)

  • Ju, Byeong-Gwon;Bang, Jun-Ho;Lee, Yun-Hui;Cha, Gyun-Hyeon;O, Myeong-Hwan
    • Korean Journal of Materials Research
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    • v.4 no.2
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    • pp.127-135
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    • 1994
  • We investigated the bonding interfaces of directly-bonded Si-Si and $Si-Sio_{2}$/Si wafer pairs. By the angle lapping-delineation, anisotropic etching, and (FIR)-TEM observation methods, we studied on the interface defects and the transient region originated from the interface stress, the various types of voids, the formation and stability of interfacial oxide. We also compared the interface image of the bonded $Si-Sio_{2}$ with that of a typically grown $Si-Sio_{2}$.

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The Study on the Delineation of the Busan Metropolitan Region, Korea (부산광역도시권 설정에 관한 연구)

  • Lee, Hee-Yul;Ju, Mee-Soon
    • Journal of the Economic Geographical Society of Korea
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    • v.10 no.2
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    • pp.167-181
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    • 2007
  • The newly adopted Korea Geodetic Datum (a.k.a. KGD2002) calls for massive reengineering work on geospatial dataset. The main focus of our study is placed on the strategy and system implementations of the required data reengineering with a keen attention to integrated approaches to interoperability, standardization, and database utilization. Our reengineering strategy includes file-to-file, file-to-DB, DB-to-file, and DB-to-DB conversion for the coordinate transformation of KGD2002. In addition to the map formats of existing standards such as DXF and Shapefile, the newly recommended standards such as GML and SVG are also accommodated in our reengineering environment. These four types of standard format may be imported into and exported from spatial database via KGD2002 transformation component. The DB-to-DB conversion, in particular, includes not only intra-database conversion but also inter-database conversion between SDE/Oracle and Oracle Spatial. All these implementations were carried out in multiple computing environments: desktop and the Web. The feasibility test of our system shows that the coordinate differences between Bessel and GRS80 ellipsoid agree with the criteria presented in the existing researches.

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Endo- and Epi-cardial Boundary Detection of the Left Ventricle Using Intensity Distribution and Adaptive Gradient Profile in Cardiac CT Images (심장 CT 영상에서 밝기값 분포와 적응적 기울기 프로파일을 이용한 좌심실 내외벽 경계 검출)

  • Lee, Min-Jin;Hong, Helen
    • Journal of KIISE:Software and Applications
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    • v.37 no.4
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    • pp.273-281
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    • 2010
  • In this paper, we propose an automatic segmentation method of the endo- and epicardial boundary by using ray-casting profile based on intensity distribution and gradient information in CT images. First, endo-cardial boundary points are detected by using adaptive thresholding and seeded region growing. To include papillary muscles inside the boundary, the endo-cardial boundary points are refined by using ray-casting based profile. Second, epi-cardial boundary points which have both a myocardial intensity value and a maximum gradient are detected by using ray-casting based adaptive gradient profile. Finally, to preserve an elliptical or circular shape, the endo- and epi-cardial boundary points are refined by using elliptical interpolation and B-spline curve fitting. Then, curvature-based contour fitting is performed to overcome problems associated with heterogeneity of the myocardium intensity and lack of clear delineation between myocardium and adjacent anatomic structures. To evaluate our method, we performed visual inspection, accuracy and processing time. For accuracy evaluation, average distance difference and overalpping region ratio between automatic segmentation and manual segmentation are calculated. Experimental results show that the average distnace difference was $0.56{\pm}0.24mm$. The overlapping region ratio was $82{\pm}4.2%$ on average. In all experimental datasets, the whole process of our method was finished within 1 second.

Application study of silicon impression material for reducing metal artifacts: preliminary study for head and neck cancer radiotherapy

  • So Hyun Park;Jinhyun Choi;Byungdo Park;Jeongho Kim;Heesoo Lim;Dae-Hyun Kim
    • Journal of Medicine and Life Science
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    • v.20 no.2
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    • pp.83-88
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    • 2023
  • Metal artifacts cause inaccuracies in target delineation, radiation treatment planning, and delivery when computed tomography images of a radiotherapy patient implanted with a high-density material in the body are acquired. In this study, we investigated the possibility of obtaining improved images in clinical trials through metal artifact reduction using silicon impression materials without the need for a specific metal artifact reduction algorithm. A silicon impression material exhibiting a constant Hounsfield unit (HU) value according to the mixing ratio of the catalysts and bases was selected. The material did not exhibit any change in weight or shape over time. For both the instances of inserting the metal material and applying the silicon impression material, the HU value and dose were compared with homogeneous cases filled with water-equivalent materials. When the silicon impression material was applied to the region where the high-density material was located, the HU value was within 5% and the dose was within 3% compared with those of the homogeneous cases. In this study, the silicon impression materials reduced metal artifacts. However, because the composition, shape, size, and location of high-density materials differ, further studies are required to consider these factors in clinical applications.

Distributions of Hydrogeological Variables and Flow Field on GIS Digital Map (GIS 수치지도를 이용한 수리지질학적 변수와 지하수 유동의 분포)

  • Lee, Cheo K.
    • Journal of the Korean Association of Geographic Information Studies
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    • v.2 no.2
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    • pp.45-58
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    • 1999
  • Digital map is utilized for an effective display of the distributions of the hydrogeological variables such as water table height(hydraulic head) and log-transmissivity(lnT) in north Pohang, KyungBug. Specifically the geostatistical method kriging is used to construct the distributions in an unconfined aquifer from a finite set of measured data. The experimental variograms for both the head and lnT suggest spherical models with nugget of 0 and range of 6km. The kriged results by using these variograms show that the head decreases primarily from the west to the east with a large peak in the north-western part and lnT is at the maximum level in the central part with outwardly decreasing trend. The constructed delineation is also used to calculate the flow field in the region. Finite differences with second order consistency are used to calculate the fluxes in the east(x) and north(y) across a vertical cross-section of unit width and height equal to the thickness of the wet zone in the aquifer. It is demonstrated that the flow is dominantly in the east with diverging trend on the eastern hillside of the water table peak. A few convergent spots also appear.

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Delineation of Functional Economic Areas in Korea based on Inter-firm Transaction Networks (기업 간 거래망에 기초한 기능적 경제권의 설정)

  • Park, Sohyun;Kwon, Kyusang;Park, Soyoung
    • Journal of the Economic Geographical Society of Korea
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    • v.23 no.1
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    • pp.1-17
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    • 2020
  • The study aims to identify economic interdependencies between regions and define functional economic areas of Korea by analyzing inter-firm transaction networks. Previous research has relied on pre-given administrative boundaries or cultural homogeneity and used data such as commuting, population movement, and cargo flows which could not fully explain economic activities. To overcome the limitations, this study applies a community detection method to inter-firm transaction networks derived from the CRETOP+ database of Korean corporate data. The novel dataset and the network analysis enables us to identify Korea's functional economic areas based on actual inter-firm linkages. The result shows that there are six to seven economic blocs in the networks as of 2018. In particular, one huge economic bloc is formed integrating the Seoul metropolitan area, Chungcheong, and Gangwon provinces. Meanwhile, North Jeolla and South Jeolla provinces form two economic blocs separately rather than being tied up in one bloc due to the low frequency of transactions between each other. The two big economic blocs of Daegu-Gyeongbuk and Busan-Gyeongnam exist, and interestingly, Ulsan, Gyeongju, and Pohang form a separate middle-sized bloc across the administrative boundaries. The results reveal that the future balanced national development policies should be implemented based on functional economic areas derived from empirical data.