• Journal of Species Research
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• v.4 no.2
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• pp.152-158
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• 2015

Dendranthema boreale and D. indicum are easily distinguished from other Korean Dendranthema spp. by having yellow flowers. We have found a putative new taxon of Dendranthema having white flowers, except for sharing most characters with Dendranthema boreale. The chloroplast (cp) genome of the putative new taxon of Dendranthema, Dendranthema sp. K247003, registered in National Agro-Biodiversity Center (ABC), was completely characterized as a genetic barcode. The cp-genome of Dendranthema sp. K247003 was 151,175-bp in size: LSC was 82,886-bp, IR 24,971-bp, SSC 18,347-bp. The cp-genome of Dendranthema sp. K247003 contains 113 genes and 21 introns consisted of 79 protein coding genes, 4 RNA genes, and 30 tRNA genes, with 20 group II introns and one group I intron. Some of the genes and there introns were duplicated in IR. The cp-DNA of Dendranthema sp. K247003 is distinguished from that of D. boreale IT121002 by 67 SNPs in genic regions of 24 protein coding genes and by a 9-bp INDEL in ycf1. Further cp-DNA study will give us better information on genetic markers of Dendranthema species.

• Korean journal of applied entomology
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• v.57 no.2
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• pp.117-121
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• 2018

The genus Canephora $H{\ddot{u}}bner$ is reported for the first time from Korea with a newly recorded species, Canephora pungelerii (Helaerts). All available information, including the collection localities and illustration of female, are presented. DNA barcode for precise identification of the species is also provided.

• Korean journal of applied entomology
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• v.51 no.2
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• pp.157-162
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• 2012

The Indian wax scale, Ceroplastes ceriferus (Fabricius) is redescribed so that it can be distinguished from Ceroplastes pseudoceriferus Green, which it most nearly resembles and has been confused with in Korea. A dichotomous key, photographs, and DNA barcode information are also presented for identifying three Ceroplastes species from Korea.

• Journal of Species Research
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• v.2 no.2
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• pp.127-144
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• 2013

An earthworm survey of Busan metropolitan area unearthed a dozen taxa in four families (including Enchytraeidae). Members of mostly common, cosmopolitan earthworm species-complexes were: Drawida cf. koreana Kobayashi, 1938, Amynthas cf. corticis (Kinberg, 1867), Aporrectodea trapezoides (Dug$\grave{e}$s, 1828) and Eisenia fetida (Savigny, 1826). Also found were Amynthas hupeiensis (Michaelsen, 1895), A. masatakae (Beddard, 1892) and Metaphire ryunome Blakemore, 2012 - the latter a new Korean record. New taxa are: moniligastrid Drawida songae yeongdo subsp. n.; megascolecid Amynthas carnosus roki subsp. n. which is compared to nominal taxon A. carnosus (Goto and Hatai, 1899) from Japan, to A. carnosus monstriferus (Kobayashi, 1936) stat. n. from Korea and to A. lichuanensis Wang and Qiu, 2005 stat. n. from China; plus lumbricid Eisenia japonica vaga subsp. n. deemed an objectively-based molecular taxon on its unique DNA COI gene barcode. Restoration of Eisenia xanthurus (Templeton, 1836) for E. andrei is mooted (in Appendix).

• Animal Systematics, Evolution and Diversity
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• v.35 no.1
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• pp.10-14
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• 2019

Acanthochitonidae Pilsbry, 1893 is one of the chiton families characterized by 9 pairs of sutural tufts on a well-expanded girdle that overgrows plates. It is found in intertidal and subtidal zones worldwide. Of its eight genera, only two have been previously reported in South Korea: Acanthochitona Gray, 1821 and Notoplax H. Adams, 1862. Here we report Leptoplax doederleini (Thiele, 1909) as the first record of the genus Leptoplax in South Korea and describe and compare its morphological features with N. kaasi Hong, Dell'Angelo and Van Belle, 1990. In addition, we provide the partial sequence of the mitochondrial DNA cytochrome c oxidase subunit I gene as a DNA barcode sequence record.

• Animal Systematics, Evolution and Diversity
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• v.35 no.3
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• pp.136-139
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• 2019

The pulmonate gastropod Ellobium chinense (Pfeiffer, 1864) is an endangered marine species along the South Korean coasts due to habitat destruction and population declines. We sequenced the cytochrome c oxidase subunit 1 (COI) of 25 E. chinense specimens collected from five coastal sites in South Korea, and identified 16 unique haplotypes. The maximum intraspecific variation among individuals was 1.6%, while interspecific differences from another ellobiid species, Auriculastra duplicata (Pfeiffer, 1854), ranged from 21.9 to 23.0%. Our barcoding data will be useful to elucidate the phylogenetic relationships among pulmonate gastropods and infer the population genetic structure of E. chinense.

• Animal Systematics, Evolution and Diversity
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• v.39 no.4
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• pp.309-313
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• 2023

Polygordiidae is recorded as a new record in the Korean fauna. Twenty-three specimens of Polygordius pacificus were collected from the low intertidal zone with coarse sandy bottom on the eastern coasts of Korea. Morphologically, there was no doubt that the specimens are close to the holotype of P. pacificus, particularly due to the presence of elongated and longitudinal pygidial glands, and the length to width ratio. The prostomium of the Korean specimens have a rounded shape that is similar to subsequent research using scanning electron microscope. The DNA sequence comparison of the mitochondrial cytochrome c oxidase subunit I (COI) between Korean and Japanese population supports the identification of present specimens.

• Korean Journal of Environment and Ecology
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• v.32 no.6
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• pp.566-574
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• 2018

The purpose of this study was to identify the phylogenetic relationships of the plants in the Korean genus Suaeda and to find out the molecular markers that could confirm the interspecies relationships in the family tree through molecular phylogenetic studies. We used the nuclear ribosomal DNA ITS and the chloroplast DNA matK, psbA-trnH, and trnL-trnF as the molecular markers. We could not distinguish between S. japonica and S. maritima and between S. maritima and S. australis in the ITS region and could not distinguish between S. japonica and S. australis with the base sequence in the psbA-trnH and trnL-trnF region. However, we analyzed the combinations of four molecular marker regions and confirmed that each of five plant species of the genus Suaeda formed the independent line. Therefore, it is considered that combinations of molecular markers would be useful for the analysis of phylogenetic relationships in the genus Suaeda. Further investigations of the ecological and morphological characteristics would be needed to understand the phylogenetic relationship and lineage diversification in the genus Suaeda.

• Korean Journal of Plant Taxonomy
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• v.44 no.4
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• pp.250-256
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• 2014

This study was carried out to understand the genetic relationship of three Aloe spp. cultivated in Korea, A. saponaria, A. vera and A. arborescens and a new variant in Korea based on three plastid (matK, trnL-F, rbcL) and one nuclear (ITS regions) DNA barcode markers. A total of 2,420 bp sequence was amplified. Two indels were detected in the trnL region, and also several species specific nucleotide loci were detected in all 29 parsimonious informative sites, and 148 variable sites were detected among four taxa studied while 170 variable and 75 parsimonious sites were detected when other Aloe spp. in worldwide were used. An UPGMA phenogram with 10,000 bootstrap replication showed that the new variant was closest to A. vera. The variant was not morphologically and genetically concurrent with any reported species so far. The clustering of Aloe species were broadly in agreement with previously reported results.

• Journal of Plant Biotechnology
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• v.47 no.1
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• pp.15-25
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• 2020

Allium L. is one of the largest genera of the Amaryllidaceae family, with more than 920 species including many economically important species used as vegetables, spices, medicines, or ornamental plants. Currently, DNA barcoding tools are being successfully used for the molecular taxonomy of Allium. A total of 46 Allium species were collected from their native areas, and DNA was extracted using the IBRC DNA extraction kit. We used specific primers to PCR amplify matK. DNA sequences were edited and aligned for homology, and a phylogenetic tree was constructed using the neighbor-joining method. The results show thymine (38.5%) was the most frequent and guanine (13.9%) the least frequent nucleotide. The matK regions of the populations were quite highly conserved, and the amount of C and CT was calculated at 0.162 and 0.26, respectively. Analysis of the nucleotide substitution showed C-T (26.22%) and A-G (8.08%) to have the highest and lowest percent, respectively. The natural selection process dN/dS was 1.16, and the naturality test results were -1.5 for Tajima's D and -1.19 for Fu's Fs. The NJ dendrogram generated three distinct clades: the first contained Allium austroiranicum and A. ampeloprasum; the second contained A. iranshahrii, A. bisotunense, and A. cf assadi; and the third contained A. rubellum and other species. In this study, we tested the utility of the matK region as a DNA barcode for discriminating Allium. species.