• Title/Summary/Keyword: Combined sequence

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UNVEILING COMPLEX OUTFLOW STRUCTURE OF UY Aur

  • PYO, TAE-SOO;HAYASHI, MASAHIKO;BECK, TRACY;DAVIS, CHRISTOPHER J.;TAKAMI, MICHIHIRO
    • Publications of The Korean Astronomical Society
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    • v.30 no.2
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    • pp.109-112
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    • 2015
  • We present [$Fe\;{\small{II}}$] ${\lambda}1.257{\mu}m$ spectra toward the interacting binary UY Aur with 0".14 angular resolution, obtained with the Near infrared Integral Field Spectrograph (NIFS) combined with the adaptive optics system Altair of the GEMINI observatory. In the [$Fe\;{\small{II}}$] emission, UY Aur A (primary) is brighter than UY Aur B (secondary). The blueshifted and redshifted emission between the primary and secondary show a complicated structure. The radial velocities of the [$Fe\;{\small{II}}$] emission features are similar for UY Aur A and B: ${\sim}-100km\;s^{-1}$ and ${\sim}+130km\;s^{-1}$ for the blueshifted and redshifted components, respectively. Considering the morphologies of the [$Fe\;{\small{II}}$] emissions and bipolar outflow context, we concluded that UY Aur A drives fast and widely opening outflows with an opening angle of ${\sim}90^{\circ}$ while UY Aur B has micro collimated jets.

Morphology, Molecular Phylogeny and Pathogenicity of Colletotrichum panacicola Causing Anthracnose of Korean Ginseng

  • Choi, Kyung-Jin;Kim, Wan-Gyu;Kim, Hong-Gi;Choi, Hyo-Won;Lee, Young-Kee;Lee, Byung-Dae;Lee, Sang-Yeob;Hong, Sung-Kee
    • The Plant Pathology Journal
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    • v.27 no.1
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    • pp.1-7
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    • 2011
  • Colletotrichum panacicola isolates were obtained from anthracnose lesions of Korean ginseng and compared with four Colletotrichum species in morphology, molecular phylogeny and pathogenicity. Based on morphological characteristics, C. panacicola was easily distinguished from Colletotrichum gloeosporioides but not from Colletotrichum higginsianum, Colletotrichum destructivum and Colletotrichum coccodes. A phylogenetic tree generated from ribosomal DNA-internal transcribed spacer sequences revealed that C. panacicola is remarkably distinguished from C. gloeosporioides and C. coccodes but not from C. higginsianum and C. destructivum. However, molecular sequence analysis of three combined genes (actin + elongation factor-$1{\alpha}$ + glutamine synthatase) provided sufficient variability to distinguish C. panacicola from other Colletotrichum species. Pathogencity tests showed that C. panacicola is pathogenic to Korean ginseng but not to other plants. These results suggest that C. panacicola is an independent taxon distin-zguishable from C. gloeosporioides and other morphologically similar Colletotrichum species.

Studies on the Methanol Permeability through PVA/SSA Ion Exchange Membranes Substituted with Various Metal Cations (금속이온으로 치환된 PVA/SSA 이온교환막의 메탄올 투과특성 연구)

  • 이충섭;정선영;전지현;신현수;임지원
    • Membrane Journal
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    • v.12 no.1
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    • pp.51-53
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    • 2002
  • The hydrogen ions in poly (vinyl alcohol) (PVA)/sulfosuccinic acid (SSA) membranes substiuted with $Li^+, Na^+, and K^+/ $of monvoalent metal ions, $Mg^{2+}, Ca^{2+} and Ba^{2+}$ of divalent metal ions, and $Al^{3+}$ of trivalent metal ion. In addition, $Li^+ ions were exchanged with varing reaction time. The effects of metal ions exchanged were investigated in terms of methanol permeability -uling diffusion cell. The methanol permeabilies decreased in the sequence of $Na^+, Li^+ and K^+$ and this might be due to the 'Salting-out' effect while the methanol permeabilities for divalent and trivalent ion-substituted membranes were affected by the combined effects of salting-out, eletrostatic crosslinking and extent of metal ion substiution. As for $Li^+$ ions, methanol permeabilities of PVA/SSA membranes decreased in proportion to the degrees of subsituted $Li^+$ ions.

Real-Time Flood Forecasting Using Rainfall-Runoff Model: II. Application (降雨-流出模型을 이용한 實時間 洪水豫測: II. 流域의 適用)

  • 정동국
    • Water for future
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    • v.29 no.1
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    • pp.151-161
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    • 1996
  • The proposed flood forecasting system combines a flood routing model with a parameter estimation model. In the parameter estimation model system states and parameters are treated with the extended state-space formulation. The extended Kalman filter is adopted to estimate the states and parameters. A sensitivity analysis is used to investigate the relative significance of the parameters. Insensitive parameters are treated as constants and parameters that are mutually correlated are combined in a simplified form. The developed estimation methodology is applied todam sites of the multi-purpose reservoirs in Korea. The forecasted hydrographs from the extended Kalman filter satisfactorily coincide with the observed. From the time sequence plots of estimated parameters, it is found that the storage coefficient is almost constant, but exponent varies appreciably in time.

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Two Human Cases of Echinococcus ortleppi Infection in the Lung and Heart in Vietnam

  • De, Nguyen Van;Minh, Pham Ngoc;Duyet, Le Van;Bich, Nguyen Ngoc;Son, Trinh Nam;Jung, Bong-Kwang;Chai, Jong-Yil
    • Parasites, Hosts and Diseases
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    • v.58 no.4
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    • pp.451-456
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    • 2020
  • This is a report of 2 cases of human hydatidosis caused by Echinococcus ortleppi in Vietnam. The patients were a 12-year-old male (case 1) having a cyst of 10.0×9.0 cm size in the lung and a 50-year-old female with a 3.0×3.3 cm-sized cyst in the heart. Eosinophilia was 33.7% in the male and 45.8% in the female patient. C-reactive protein was increased to 16.5 mg/L in the male and 18.2 mg/L in the female. Both patients were positive for ELISA at OD=2.5 and 3.1, respectively. Echinococcus protoscolices were collected from the cysts by amniocentesis and surgery. The protoscolices were identified as E. ortleppi by morphology and analysis of mitochondrial NADH dehydrogenase 1 (nad1) gene sequence. Both patients were cured by surgical resection of the hydatid cyst combined with albendazole medication. The E. ortleppi infection in lung is the second report, and the other in the heart is the first in Vietnam.

Intraspecific Molecular Phylogeny, Genetic Variation and Phylogeography of Reticulitermes speratus (Isoptera:Rhinotermitidae)

  • Park, Yung Chul;Kitade, Osamu;Schwarz, Michael;Kim, Joo Pil;Kim, Won
    • Molecules and Cells
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    • v.21 no.1
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    • pp.89-103
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    • 2006
  • Population structure was investigated in Reticulitermes speratus populations in the Korean Peninsula and the Japanese Archipelago. All trees derived from analyses of the combined sequence dataset of two mitochondrial genes, COII and COIII, showed that R. speratus populations cluster into two major clades comprising the Korean/southern Japanese populations and the northern Japanese populations. Analysis of population genetic structure showed strong genetic partitioning between populations of the two clades. To understand historical migration routes and current distributions, the phylogeographic history of R. speratus was inferred from intra-/interspecific phylogeny and divergence times estimated between the clades of the phylogenetic tree. The estimated migration route and divergence time of ancestral R. speratus are congruent with recent paleogeographic hypotheses involving land-bridge connections between the Asian continent and the Japanese Archipelago. We suggest that ancestral R. speratus separated into northern and southern Japanese populations after its migration into the Japanese main islands from East China during the early Pleistocene via the East China Sea basin, which may have been exposed during that period. The Korean populations seem to have diverged recently from southern Japanese populations; this may explain the current distribution of R. speratus in the Japanese Arachipelago, and account for why it is restricted to northern areas of the Tokara Strait.

Prediction of phosphorylation sites using multiple kernel learning (다중 커널 학습을 이용한 단백질의 인산화 부위 예측)

  • Kim, Jong-Kyoung;Choi, Seung-Jin
    • Proceedings of the Korean Information Science Society Conference
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    • 2007.10b
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    • pp.22-27
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    • 2007
  • Phosphorylation is one of the most important post translational modifications which regulate the activity of proteins. The problem of predicting phosphorylation sites is the first step of understanding various biological processes that initiate the actual function of proteins in each signaling pathway. Although many prediction methods using single or multiple features extracted from protein sequences have been proposed, systematic data integration approach has not been applied in order to improve the accuracy of predicting general phosphorylation sites. In this paper, we propose an optimal way of integrating multiple features in the framework of multiple kernel learning. We optimally combine seven kernels extracted from sequence, physico-chemical properties, pairwise alignment, and structural information. Using the data set of Phospho. ELM, the accuracy evaluated by 5-fold cross-validation reaches 85% for serine, 85% for threonine, and 81% for tyrosine. Our computational experiments show significant improvement in the performance of prediction relative to a single feature, or to the combined feature with equal weights. Moreover, our systematic integration method significantly improves the prediction preformance compared with the previous well-known methods.

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Uncertainty analyses of spent nuclear fuel decay heat calculations using SCALE modules

  • Shama, Ahmed;Rochman, Dimitri;Pudollek, Susanne;Caruso, Stefano;Pautz, Andreas
    • Nuclear Engineering and Technology
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    • v.53 no.9
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    • pp.2816-2829
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    • 2021
  • Decay heat residuals of spent nuclear fuel (SNF), i.e., the differences between calculations and measurements, were obtained previously for various spent fuel assemblies (SFA) using the Polaris module of the SCALE code system. In this paper, we compare decay heat residuals to their uncertainties, focusing on four PWRs and four BWRs. Uncertainties in nuclear data and model inputs are propagated stochastically through calculations using the SCALE/Sampler super-sequence. Total uncertainties could not explain the residuals of two SFAs measured at GE-Morris. The combined z-scores for all SFAs measured at the Clab facility could explain the resulting deviations. Nuclear-data-related uncertainties contribute more in the high burnup SFAs. Design and operational uncertainties tend to contribute more to the total uncertainties. Assembly burnup is a relevant variable as it correlates significantly with the SNF decay heat. Additionally, burnup uncertainty is a major contributor to decay heat uncertainty, and assumptions relating to these uncertainties are crucial. Propagation of nuclear data and design and operational uncertainties shows that the analyzed assemblies respond similarly with high correlation. The calculated decay heats are highly correlated in the PWRs and BWRs, whereas lower correlations were observed between decay heats of SFAs that differ in their burnups.

Coupled evaluation of the free vibration characteristics of magneto-electro-elastic skew plates in hygrothermal environment

  • Mahesh, Vinyas;Kattimani, Subhaschandra;Harursampath, Dineshkumar;Trung, Nguyen-Thoi
    • Smart Structures and Systems
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    • v.24 no.2
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    • pp.267-292
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    • 2019
  • The present article addresses the coupled free vibration problem of skew magneto-electro-elastic plates (SMEE) considering the temperature-moisture dependent material properties. The plate kinematics follows Reddy's higher order shear deformation theory. With the aid of finite element methods, the governing equations of motion are derived considering the Hamilton's principle and solved by adopting condensation technique. The influence of different temperature and moisture dependent empirical constants on the frequency response of SMEE plate has been assessed. In addition, the natural frequencies corresponding to various fields are evaluated and the effect of empirical constants on these coupled frequencies is determined. A detailed parametric study has been carried out to assess the individual effects of temperature and moisture dependent empirical constants along with their combined effect, aspect ratio, length-to-width ratio, stacking sequence and boundary conditions. The results reveal that the external environment as well as the geometrical skewness has a significant influence on the stiffness of the SMEE plates.

Genetic Diversity of the Pear Scab Fungus Venturia nashicola in Korea

  • Choi, Eu Ddeum;Kim, Gyoung Hee;Park, Sook-Young;Song, Jang Hoon;Lee, Young Sun;Jung, Jae Sung;Koh, Young Jin
    • Mycobiology
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    • v.47 no.1
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    • pp.76-86
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    • 2019
  • Scab disease caused by Venturia nashicola is of agroeconomic importance in cultivation of Asian pear. However, little is known about the degree of genetic diversity in the populations of this pathogen. In this study, we collected 55 isolates from pear scab lesions in 13 major cultivation areas in Korea and examined the diversity using sequences of internal transcribed spacer (ITS) region, ${\beta}$-tubulin (TUB2), and translation elongation factor-$1{\alpha}$ ($TEF-1{\alpha}$) genes as molecular markers. Despite a low level of overall sequence variation, we found three distinctive subgroups from phylogenetic analysis of combined ITS, TUB2, and $TEF-1{\alpha}$ sequences. Among the three subgroups, subgroup 1 (60% of isolates collected) was predominant compared to subgroup 2 (23.6%) or subgroup 3 (16.4%) and was distributed throughout Korea. To understand the genetic diversity among the subgroups, RAPD analysis was performed. The isolates yielded highly diverse amplicon patterns and none of the defined subgroups within the dendrogram were supported by bootstrap values greater than 30%. Moreover, there is no significant correlation between the geographical distribution and the subgroups defined by molecular phylogeny. Our data suggest a low level of genetic diversification among the populations of V. nashicola in Korea.