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Comparative Genomic Analysis and Rapid Molecular Detection of Xanthomonas euvesicatoria Using Unique ATP-Dependent DNA Helicase recQ, hrpB1, and hrpB2 Genes Isolated from Physalis pubescens in China

  • Faisal Siddique;Yang Mingxiu;Xu Xiaofeng;Ni Zhe;Haseeb Younis;Peng Lili;Zhang Junhua
    • The Plant Pathology Journal
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    • v.39 no.2
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    • pp.191-206
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    • 2023
  • Ground cherry (Physalis pubescens) is the most prominent species in the Solanaceae family due to its nutritional content, and prospective health advantages. It is grown all over the world, but notably in northern China. In 2019 firstly bacterial leaf spot (BLS) disease was identified on P. pubescens in China that caused by both BLS pathogens Xanthomonas euvesicatoria pv. euvesicatoria resulted in substantial monetary losses. Here, we compared whole genome sequences of X. euvesicatoria to other Xanthomonas species that caused BLS diseases for high similarities and dissimilarities in genomic sequences through average nucleotide identity (ANI) and BLAST comparison. Molecular techniques and phylogenetic trees were adopted to detect X. euvesicatoria on P. pubescens using recQ, hrpB1, and hrpB2 genes for efficient and precise identification. For rapid molecular detection of X. euvesicatoria, loop-mediated isothermal amplification, polymerase chain reaction (PCR), and real-time PCR techniques were used. Whole genome comparison results showed that the genome of X. euvesicatoria was more closely relative to X. perforans than X. vesicatoria, and X. gardneri with 98%, 84%, and 86% ANI, respectively. All infected leaves of P. pubescens found positive amplification, and negative controls did not show amplification. The findings of evolutionary history revealed that isolated strains XeC10RQ, XeH9RQ, XeA10RQ, and XeB10RQ that originated from China were closely relative and highly homologous to the X. euvesicatoria. This research provides information to researchers on genomic variation in BLS pathogens, and further molecular evolution and identification of X. euvesicatoria using the unique target recQ gene through advance molecular approaches.

Development of Alkali Stimulant-Based Reinforced Grouting Material from Blast Furnace Slag Powder (고로슬래그 미분말을 이용한 알칼리자극제 기반의 보강그라우트재 개발)

  • Seo, Hyeok;Jeong, Sugeun;Kim, Daehyeon
    • The Journal of Engineering Geology
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    • v.31 no.1
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    • pp.67-81
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    • 2021
  • Grouting is used for reinforcement and waterproofing of soft ground to increase its bearing capacity, reduce the impacts of rising or lowering groundwater levels, and reduce subsidence due to vibration and general causes. This study investigated the enhancement of grout strength and hardening time by the addition of reinforcing fibers, and the development of non-cement grouting materials from blast furnace slag. An experiment was performed to measure the increase in grout strength resulting from the addition of 0.5% increments of aramid and carbon reinforcing fibers. The results show that the uniaxial compressive strength of grout increases with increasing content of reinforcing fiber. Comparison of three admixtures of finely powdered blast furnace slag and 10%, 20%, and 30% calcium hydroxide stimulating agent showed that the uniaxial compressive strength of the mixture increases with increasing content of alkaline stimulant; however, the strength was lower than for 100% pure cement. The reaction of calcium hydroxide with blast furnace slag powder, which increases the strength of the grout, is more effective if injected as a solution rather than a powder.

Compressive Strength and Shrinkage Strain of Slag-Based Alkali-Activated Mortar with Gypsum (석고가 첨가된 슬래그 기반 알카리활성 모르터의 압축강도 및 건조수축 변형률)

  • Yang, Keun-Hyeok;Sin, Jae-Il
    • Journal of the Korea Institute of Building Construction
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    • v.8 no.1
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    • pp.57-62
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    • 2008
  • Twelve mortars were mixed and tested to explore the effect of gypsum on the compressive strength development and shrinkage strain of alkali-activated mortars. Powder typed sodium silicate and ground granulated blast-furnace slag were employed as alkaline activator and source material, respectively, to produce cementless mortar. The main variables investigated were alkali quality coefficient combining the concentration of activator and main compositions in source material, and the adding amount of gypsum ranged between 1 and 5% with respect to the weight of binder. Initial flow, compressive strength development, modulus of rupture, and shrinkage strain behavior of mortar specimens were measured. In addition, the hydration production of alkali-activated pastes with gypsum was traced using X-ray diffraction and energy-dispersive X-ray analysis combined with scanning electron microscope image. Test results showed that the initial flow of slag-based alkali-activated mortar was little influenced by the adding amount of gypsum. On the other hand, the effect of gypsum on the compressive strength of mortar specimens was dependent on the alkali quality coefficient, indicating that the compressive strength increased with the increase of the adding amount of gypsum until a certain limit, beyond which the strength decreased slowly. Shrinkage strain of mortar tested was little influenced by the adding amount of gypsum because no ettringite as hydration product was generated. However, the adding of gypsum had a beneficial effect on reducing the microcrack in the alkali-activated mortar.

Effect of Autoclave Curing on the Microstructure of Blended Cement Mixture Incorporating Ground Dune Sand and Ground Granulated Blast Furnace Slag

  • Alawad, Omer Abdalla;Alhozaimy, Abdulrahman;Jaafar, Mohd Saleh;Aziz, Farah Nora Abdul;Al-Negheimish, Abdulaziz
    • International Journal of Concrete Structures and Materials
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    • v.9 no.3
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    • pp.381-390
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    • 2015
  • Investigating the microstructure of hardened cement mixtures with the aid of advanced technology will help the concrete industry to develop appropriate binders for durable building materials. In this paper, morphological, mineralogical and thermogravimetric analyses of autoclave-cured mixtures incorporating ground dune sand and ground granulated blast furnace slag as partial cementing materials were investigated. The microstructure analyses of hydrated products were conducted using scanning electron microscopy (SEM), energy dispersive X-ray spectroscopy (EDX), differential thermal analysis (DTA), thermo-graphic analysis (TGA) and X-ray diffraction (XRD). The SEM and EDX results demonstrated the formation of thin plate-like calcium silicate hydrate plates and a compacted microstructure. The DTA and TGA analyses revealed that the calcium hydroxide generated from the hydration binder materials was consumed during the secondary pozzolanic reaction. Residual crystalline silica was observed from the XRD analysis of all of the blended mixtures, indicating the presence of excess silica. A good correlation was observed between the compressive strength of the blended mixtures and the CaO/$SiO_2$ ratio of the binder materials.

An Experimental Study on Compression Strength and Carbonation Resistance for Ternary High-Performance Concrete with fly-sah, granulated blast furnace (플라이애쉬와 고로슬래그를 사용한 3성분계 고성능 콘크리트의 강도 및 촉진 중성화에 대한 실험적 고찰)

  • Kwon, Young-Rak;Kim, Hong-Sam;Lee, Chang-Young;Cheng, Hai-Moon;Ahn, Tae-Song
    • Proceedings of the Korea Concrete Institute Conference
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    • 2008.04a
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    • pp.445-448
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    • 2008
  • It is essential that concrete component is made up with aggregate, cement and water. But today, Public concern is increasing of a variety structure and ocean environmental, resource recycle. Also, According to heat of hydration rising, Concrete is make a causative of concrete-crack. Concrete-crack cause a falling-off in quality of concrete. consequently, High-performance concrete is evaluated by concrete material properties and carbonation resistance with different admixture(fixing fly-ash 20%), granulated blast furnace slag replacement ratio (30%, 45%) different W/B (26%, 30%, 34%) and XRD(X-ray Diffraction) analysis.

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Development of Salted Semi-dried Common Gray Mullet Mugil cephalus using Response Surface Methodology (Response Surface Methodology를 이용한 숭어(Mugil cephalus) 반염건품의 개발)

  • Park, Kwon Hyun;Heu, Min Soo;Kim, Jin-Soo
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.48 no.6
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    • pp.839-848
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    • 2015
  • This study examined the optimal salting drying method and processing conditions (salt concentration, curing time, dry temperature, and drying time) for preparing salted semi-dried common gray mullet (SSD-CGM) Mugil cephalus based on the moisture content, salinity, and overall acceptance using response surface methodology (RSM). The moisture content, salinity, and overall acceptance of SSD-CGM prepared with different salting methods revealed that dry salting was the optimal salting method for preparing high-quality SSD-CGM. The optimal drying method for preparing high-quality SSD-CGM based on the drying velocity and sensory color was hot air-blast drying. The results of the RSM program indicated that the optimal independent variables ($X_1$, salt concentration; $X_2$, curing time; $X_3$, dry temperature; $X_4$, drying time) based on the dependent variables ($Y_1$, moisture content; $Y_2$, salinity; $Y_3$, overall acceptance) for high-quality SSD-CGM were 5.6% for $X_1$, 2.7 h for $X_2$, $47.0^{\circ}C$ for $X_3$, and 8.5 h for $X_4$ for uncoded values. The predicted values of $Y_1$, $Y_2$, and $Y_3$ for SSD-CGM prepared under optimal conditions were 54.4%, 4.2%, and 6.3, respectively, while the experimental values were $55.2{\pm}1.0%$, $4.1{\pm}0.3%$ and $6.7{\pm}0.8$. The actual and predicted values did not differ.

Radiation Effects on Pyricularia oryzae Cav. Causing Rice Blast Disease Organism (도열병균의 방사선감수성에 관한 연구)

  • Kwon Shin Han;Oh Jeung Haing;Kim Ho Won
    • Korean journal of applied entomology
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    • v.13 no.4 s.21
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    • pp.245-249
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    • 1974
  • In order to establish a dose limits for subsequent induced mutation research itl Pyricularia oryzae, X-ray sensitivity of the conidia and the vegetative hypae of the fungus, race N-1, was investigated. Conidia of the fungus irradiated with X-rays reduced significantly in spore germination inversely with radiation doses. A severe suppression of conidia germination in about $80\%$ was found at the dose of 120kR, and the rests of the conidia produce very short and lysed germ tubes. A stimulated effect was observed in the elongation of hyphae from the conidia of 10 kR irradiation at initial stage of the growth. The radiosensitivity of hyphae was exremely higher than that of conidia with the increase of radiation doses. It was also recognized that the frequency of X-ray induced mutation in pathogenicity was directly proportional to radiation doses.

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Development of slag based Shirasu geopolymer

  • Katpady, Dhruva Narayana;Takewaka, Koji;Yamaguchi, Toshinobu
    • Computers and Concrete
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    • v.20 no.1
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    • pp.77-84
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    • 2017
  • Shirasu, a pyroclastic flow deposit, showed considerable performance as aluminosilicate source in geopolymer, based on past research. However, the polymerization reactivity was somewhat lower compared to the traditional fly ash based geopolymer even though the long-term strength was fairly good. The present study concentrates on the development of higher initial strength performance of Shirasu based geopolymer by utilizing ground granulated blast furnace slag as an admixture. Mortars with various mix proportions were adopted to study the effect of parametric changes on strength development along with the addition of slag in different percentages. A combination of sodium hydroxide and sodium silicate was used as alkaline activators considering parameters like molar ratios of alkali to geopolymer water and silica to alkali molar ratio. The mortars were cured at elevated temperatures under different curing conditions to analyze the effect on strength development. Compressive strength test, mercury intrusion porosimetry and X-ray powder diffraction were carried out to assess the strength performance and microstructure of slag-Shirasu based geopolymer. Based on the experimental study, it was observed that the initial and long-term strength development of Slag-Shirasu geopolymer were improved by the addition of slag.

Development of Expressed Sequence Tags(ESTs) from Korean Native Chicken cDNA Libraries

  • Shin, Sang-Su;Song, Ki-Duk;Shin, Jee-Hye;Lee, Sun-Duck;Lee, Young-Mok;Kim, Jin-Kyu;Han, Jae-Yong
    • Proceedings of the Korea Society of Poultry Science Conference
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    • 2003.11a
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    • pp.67-68
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    • 2003
  • 한국 재래 닭의 유전적 특성 규명 및 기능 유전체 연구의 기초재료를 확보하고자 대량 EST 염기서열 결정 및 생물정보학 분석을 실시하였다. 대량 EST 염기서열 분석을 위한 첫 번째 단계로 재래 닭의 뇌, 비장, 정소, 배아 생식기를 이용하여 cDNA library를 구축하였다. 각각의 library로부터 총 15,121개의 클론을 선정하여 염기서열을 결정하였다. 생물정보학 분석결과 15,121개의 염기서열은 총 10,353개의 contig로 정리되었다. 이들 염기서열을 기존 데이터베이스를 대상으로 tBlastX(http://www.ncbi.nlm.nih.gov/BLAST) 분석을 실시한 결과, 염기서열 중 56 %가 기존 데이터베이스에 존재하는 유전자와의 상동성을 보였다. 상동성을 보이는 유전자들은 유전자의 구조 및 기능 분석에 이용될 것이고, 상동성을 보이지 않는 유전자들은 microarray와 같은 대량 유전자 발현분석 시스템을 이용하여 선별한 후 기능분석이 실시될 것이다.

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Internet-based Information System for Agricultural Weather and Disease and Insect fast management for rice growers in Gyeonggi-do, Korea

  • S.D. Hong;W.S. Kang;S.I. Cho;Kim, J.Y.;Park, K.Y;Y.K. Han;Park, E.W.
    • Proceedings of the Korean Society of Plant Pathology Conference
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    • 2003.10a
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    • pp.108.2-109
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    • 2003
  • The Gyeonggi-do Agricultural Research and Extension Services has developed a web-site (www.epilove.com) in collaboration with EPINET to provide information on agricultural weather and rice disease and insect pest management in Gyeonggi-do. Weather information includes near real-time weather data monitored by automated weather stations (AWS) installed at rice paddy fields of 11 Agricultural Technology Centers (ATC) in Gyeonggi-do, and weekly weather forecast by Korea Meteorological Administration (KMA). Map images of hourly air temperature and rainfall are also generated at 309m x 309m resolution using hourly data obtained from AWS installed at 191 locations by KMA. Based on near real-time weather data from 11 ATC, hourly infection risks of rice blast, sheath blight, and bacterial grain rot for individual districts are estimated by disease forecasting models, BLAST, SHBLIGHT, and GRAINROT. Users can diagnose various diseases and insects of rice and find their information in detail by browsing thumbnail images of them. A database on agrochemicals is linked to the system for disease and insect diagnosis to help users search for appropriate agrochemicals to control diseases and insect pests.

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