• Title/Summary/Keyword: Bio-analysis

Search Result 3,811, Processing Time 0.033 seconds

Exploring the feasibility of Salmonella Typhimurium-specific phage as a novel bio-receptor

  • Choi, In Young;Park, Do Hyeon;Chin, Brayan A.;Lee, Cheonghoon;Lee, Jinyoung;Park, Mi-Kyung
    • Journal of Animal Science and Technology
    • /
    • v.62 no.5
    • /
    • pp.668-681
    • /
    • 2020
  • The purpose of this study was aimed to isolate a Salmonella Typhimurium-specific phage (KFS-ST) from washing water in a poultry processing facility and to investigate the feasibility of the KFS-ST as a novel bio-receptor for the magnetoelastic (ME) biosensor method. KFS-ST against S. Typhimurium was isolated, propagated, and purified using a CsCl-gradient ultracentrifugation. Morphological characteristics of KFS-ST were analyzed using transmission electron microscopy (TEM). Its specificity and efficiency of plating analysis were conducted against 39 foodborne pathogens. The temperature and pH stabilities of KFS-ST were investigated by the exposure of the phage to various temperatures (-70℃-70℃) and pHs (1-12) for 1 h. A one-step growth curve analysis was performed to determine the eclipse time, latent time and burst size of phage. The storage stability of KFS-ST was studied by exposing KFS-ST to various storage temperatures (-70℃, -20℃, 4℃, and 22℃) for 12 weeks. KFS-ST was isolated and purified with a high concentration of (11.47 ± 0.25) Log PFU/mL. It had an icosahedral head (56.91 ± 2.90 nm) and a non-contractile tail (225.49 ± 2.67 nm), which was classified into the family of Siphoviridae in the order of Caudovirales. KFS-ST exhibited an excellent specificity against only S. Typhimurium and S. Enteritidis, which are considered two of the most problematic Salmonella strains in the meat and poultry. However, KFS-ST did not exhibit any specificity against six other Salmonella and 27 non-Salmonella strains. KFS-ST was stable at temperature of 4℃ to 50℃ and at pH of 4 to 12. The eclipse time, latent time, and burst size of KFS-ST were determined to be 10 min, 25 min and 26 PFU/ infected cell, respectively. KFS-ST was relatively stable during the 12-week storage period at all tested temperatures. Therefore, this study demonstrated the feasibility of KFS-ST as a novel bio-receptor for the detection of S. Typhimurium and S. Enteritidis in meat and poultry products using the ME biosensor method.

Analysis on the Ripple and Investment Effect of Digital Bio-Healthcare Industry : Using Input-Output Tables 2019 (디지털바이오헬스케어(Digital Bio-Healthcare)산업의 파급효과 및 투자효과 분석 : 2019년 산업연관표를 중심으로)

  • Jang, Pilho;Kim, Yonghwan;Lee, Changwoon;Jun, Sungkyu;Jung, Myungjin
    • Journal of Internet Computing and Services
    • /
    • v.21 no.3
    • /
    • pp.71-81
    • /
    • 2020
  • The digital bio-healthcare industry is one of the three major fostering industries of the Korean Moon Jae-In government. The purpose of this study is to compare and analyze the ripple effect and investment effect in digital bio-healthcare industry. Analyzing the ripple effects of the digital bio-healthcare industry is very important to induce policies on industry and technology development. First, the research methods were reclassified into 33 industries in the standard industry classification and rewritten into 35 industry classification tables. Second, various trigger coefficients and ripple effects coefficients were rewritten by the analysis framework of the industrial association table. Third, we compared the ripple effects of related industries in the production, investment, value-added and jobs sectors of the digital bio-healthcare industry. Finally, in terms of investment effects, the effects of in-house and related industries were compared. The result of this study would be helpful in the establishment of industrial policy and technology development policy.

Fetal Bio Index Difference Analysis by Country and Quadratic Regression Model Design for The Gestational Age Prediction (태아 생체지표 국가별 차이분석 및 임신주수 예측의 2차 회귀모형 설계)

  • Kim, Changsoo;Yang, Sung-Hee
    • The Journal of the Korea Contents Association
    • /
    • v.20 no.8
    • /
    • pp.685-691
    • /
    • 2020
  • Standard values for fetal bio index measurements should be applied differently depending on the past present and general characteristics of the target population. Therefore, we tried to predict the number of gestational week(GA) and analyze the differences by country based on the measurements of Korean fetal bio index. 480 fetal bio index measurements between 15~38 weeks of pregnancy using ultrasound were compared retrospectively with USA ad Japanese data. One Way ANOVA was used for the analysis of differences by country, and quadratic regression model was designed to predict the GA of fetal bio index in order to predict the standard pregnancy number of Korean fetuses(p<0.005). Mean difference in the 95% confidence interval is BPD was Korea and USA 0.17, Korea and Japan 0.11, AC was Korea and USA -0.35, Korea and Japan 0.42, FL was Korea and USA -0.18, Korea and Japan 0.14. Therefore, fetal bio index for GA predict is considered to be the standard of the fetal growth assessment by applying the country specific standard in consideration of differences between races.

Enhanced fungal resistance in Arabidopsis expressing wild rice PR-3 (OgChitIVa) encoding chitinase class IV

  • Pak, Jung-Hun;Chung, Eun-Sook;Shin, Sang-Hyun;Jeon, Eun-Hee;Kim, Mi-Jin;Lee, Hye-Young;Jeung, Ji-Ung;Hyung, Nam-In;Lee, Jai-Heon;Chung, Young-Soo
    • Plant Biotechnology Reports
    • /
    • v.3 no.2
    • /
    • pp.147-155
    • /
    • 2009
  • Oryza grandiglumis Chitinase IVa (OgChitIVa) cDNA encoding a class IV chitinase was cloned from wild rice (Oryza grandiglumis). OgChitIVa cDNA contains an open reading frame of 867 nucleotides encoding 288 amino acid residues with a predicted molecular weight of 30.4 kDa and isoelectric point of 8.48. Deduced amino acid sequences of OgChitIVa include the signal peptide and chitin-binding domain in the N-terminal domain and conserved catalytic domain. OgChitIVa showed significant similarity at the amino acid level with related monocotyledonous rice and maize chitinase, but low similarity with dicotyledoneous chitinase. Southern blot analysis showed that OgChitIVa genes are present as two copies in the wild rice genome. It was shown that RNA expression of OgChitIVa was induced by defense/stress signaling chemicals, such as jasmonic acid, salicylic acid, and ethephon or cantharidin and endothall or wounding, and yeast extract. It was demonstrated that overexpression of OgChitIVa in Arabidopsis resulted in mild resistance against the fungal pathogen, Botrytis cinerea, by lowering disease rate and necrosis size. RT-PCR analysis showed that PR-1 and PR-2 RNA expression was induced in the transgenic lines. Here, we suggest that a novel OgChitIVa gene may play a role in signal transduction process in defense response against B. cinerea in plants.

Assessment of the Persistence of DNA in Decomposing Leaves of CMVP0-CP Transgenic Chili Pepper in the Field Conditions (포장 조건에서 CMVP0-CP 형질전환 고추 도입유전자의 지속성 조사)

  • Lee, Bum-Kyu;Kim, Chang-Gi;Park, Ji-Young;Park, Kee-Woong;Yi, Hoon-Bok;Harn, Chee-Hark;Kim, Hwan-Mook
    • Korean Journal of Environmental Agriculture
    • /
    • v.26 no.4
    • /
    • pp.319-324
    • /
    • 2007
  • This study was conducted to evaluate the persistence of DNA in the transgenic chili pepper resistant to cucumber mosaic virus (CMV) in the field condition. We analyzed the persistence of genes in the leaf samples obtained from two field conditions, below and above soil. Transgenic and non-transgenic leaf tissues were buried in the soil at a depth of 10 cm or placed on the soil surface. Qualitative and quantitative PCR analysis showed that the amount of transferred genes from the transgenic peppers below and above soil was dropped to 28.3-42.7% one month after buried and it was rapidly reduced to 0.9-3.3% after two months. The transgenes were not detected three to four month after buried. In addition, DNA of the leaves placed below soil decomposed about 8%more than those on soil surface. The gene transfer from decomposing leaves of the transgenic pepper to soil was investigated by PCR analysis with the soil attached to the samples. The PCR result indicated that the gene transfer from the transgenic pepper to soil was not occurred.

Predicting Common Patterns of Livestock-Vehicle Movement Using GPS and GIS: A Case Study on Jeju Island, South Korea

  • Qasim, Waqas;Cho, Jea Min;Moon, Byeong Eun;Basak, Jayanta Kumar;Kahn, Fawad;Okyere, Frank Gyan;Yoon, Yong Cheol;Kim, Hyeon Tae
    • Journal of Biosystems Engineering
    • /
    • v.43 no.3
    • /
    • pp.247-254
    • /
    • 2018
  • Purpose: Although previous studies have performed on-farm evaluations for the control of airborne diseases such as foot-and-mouth disease (FMD) and influenza, disease control during the process of livestock and manure transportation has not been investigated thoroughly. The objective of this study is to predict common patterns of livestock-vehicle movement. Methods: Global positioning system (GPS) data collected during 2012 and 2013 from livestock vehicles on Jeju Island, South Korea, were analyzed. The GPS data included the coordinates of moving vehicles according to the time and date as well as the locations of livestock farms and manure-keeping sites. Data from 2012 were added to Esri software ArcGIS 10.1 and two approaches were adopted for predicting common vehicle-movement patterns, i.e., point-density and Euclidean-distance tools. To compare the predicted patterns with actual patterns for 2013, the same analysis was performed on the actual data. Results: When the manure-keeping sites and livestock farms were the same in both years, the common patterns of 2012 and 2013 were similar; however, differences arose in the patterns when these sites were changed. By using the point-density tool and Euclidean-distance tool, the average similarity between the predicted and actual common patterns for the three vehicles was 80% and 72%, respectively. Conclusions: From this analysis, we can determine common patterns of livestock vehicles using previous year's data. In the future, to obtain more accurate results and to devise a model for predicting patterns of vehicle movement, more dependent and independent variables will be considered.

Bio-Sensing Convergence Big Data Computing Architecture (바이오센싱 융합 빅데이터 컴퓨팅 아키텍처)

  • Ko, Myung-Sook;Lee, Tae-Gyu
    • KIPS Transactions on Software and Data Engineering
    • /
    • v.7 no.2
    • /
    • pp.43-50
    • /
    • 2018
  • Biometric information computing is greatly influencing both a computing system and Big-data system based on the bio-information system that combines bio-signal sensors and bio-information processing. Unlike conventional data formats such as text, images, and videos, biometric information is represented by text-based values that give meaning to a bio-signal, important event moments are stored in an image format, a complex data format such as a video format is constructed for data prediction and analysis through time series analysis. Such a complex data structure may be separately requested by text, image, video format depending on characteristics of data required by individual biometric information application services, or may request complex data formats simultaneously depending on the situation. Since previous bio-information processing computing systems depend on conventional computing component, computing structure, and data processing method, they have many inefficiencies in terms of data processing performance, transmission capability, storage efficiency, and system safety. In this study, we propose an improved biosensing converged big data computing architecture to build a platform that supports biometric information processing computing effectively. The proposed architecture effectively supports data storage and transmission efficiency, computing performance, and system stability. And, it can lay the foundation for system implementation and biometric information service optimization optimized for future biometric information computing.

Generation of Bacterial Blight Resistance Rice with Transcription Factor OsNAC69-overexpressing (전사인자 OsNAC69-과발현을 통한 흰잎마름병 저항성 벼 제작)

  • Park, Sang Ryeol;Cha, Eun-Mi;Moon, Seok Jun;Shin, Dongjin;Hwang, Duk-Ju;Ahn, Il-Pyung;Bae, Shin-Chul
    • Korean Journal of Breeding Science
    • /
    • v.43 no.5
    • /
    • pp.457-463
    • /
    • 2011
  • Plant specific gene family, NAC (NAM, ATAF, and CUC) transcription factors have been characterized for their roles in plant growth, development, and stress tolerance. In this study, we isolated OsNAC69 gene and analyzed expression level by inoculation of bacterial leaf blight pathogen, Xanthomonas oryzae pv. oryzae (Xoo). NAC transcription factor family can be divided into five groups (I-V). On the basis of phylogenetic analysis, OsNAC69 was fall into group II. OsNAC69 was strongly induced 1 hr after infected with Xoo. To investigate its biological function in the rice, we constructed vector for overexpression in rice, and then generated transgenic rice lines. Gene expression of OsNAC69-overexpressed transgenic rice lines were analyzed by northern blot. Analysis of disease resistance to pathogen Xoo, nine OsNAC69-overexpressed transgenic rice lines showing high expression level of OsNAC69 were shown more resistant than wild type. These results suggest that OsNAC69 gene may play regulatory role during pathogen infection.

Design and Dynamic Analysis of Fish-like Robot;PoTuna

  • Kim, Eun-Jung;Youm, Young-Il
    • 제어로봇시스템학회:학술대회논문집
    • /
    • 2003.10a
    • /
    • pp.1580-1586
    • /
    • 2003
  • This paper presents the design and the analysis of a "fish-like underwater robot". In order to develop swimming robot like a real fish, extensive hydrodynamic analysis were made followed by the study of biology of the fishes especially its maneuverability and propel styles. Swimming mode is achieved by mimicking fish-swimming of carangiform. This is the swimming mode of the fast motion using its tail and peduncle for propulsion. In order to generate configurations of vortices that gives efficient propulsion yawing and surging with a caudal fin has applied and in order to submerge and maintain the body balance pitching and heaving motion with a pair of pectoral fin is used. We have derived the equation of motion of PoTuna by two methods. In first method, we use the equation of motion of underwater vehicle with the potential flow theory for the power of propulsion. In second method, we apply the method of the equation of motion of UVM(Underwater Vehicle-Manipulator). Then, we compare these results.

  • PDF

Kinematics Analysis of the Milti-joint Robot Manipulator for an Automatic Milking System (자동 착유시스템을 위한 다관절 로봇 머니퓰레이터의 기구학적 분석)

  • Kim, W.;Lee, D.W.
    • Journal of Animal Environmental Science
    • /
    • v.13 no.3
    • /
    • pp.179-186
    • /
    • 2007
  • The purpose of this study was kinematics analysis of the multi-joint robot manipulator for an automatic milking system. The multi-joint robot manipulator was consisted of one perpendicular link and four revolution links to attach simultaneously four teat cups to four teats of a milking cow. The local coordinates of each joints on the robot manipulator was given for kinematics analysis. The transformation of manipulator was able to be given by kinematics using Denavit-Hatenberg parameters. The value of inverse kinematics which was solved by two geometric solution methods. The kinematics solutions was verified by AutoCAD, MATLAB, simulation program was developed using Visual C++.

  • PDF