• Title/Summary/Keyword: Bio-Data

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A New Support Vector Machines for Classifying Uncertain Data (불완전 데이터의 패턴 분석을 위한 $_{MI}$SVMs)

  • Kiyoung, Lee;Dae-Won, Kim;Doheon, Lee;Kwang H., Lee
    • Proceedings of the Korean Information Science Society Conference
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    • 2004.10b
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    • pp.703-705
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    • 2004
  • Conventional support vector machines (SVMs) find optimal hyperplanes that have maximal margins by treating all data equivalently. In the real world, however, the data within a data set may differ in degree of uncertainty or importance due to noise, inaccuracies or missing values in the data. Hence, if all data are treated as equivalent, without considering such differences, the optimal hyperplanes identified are likely to be less optimal. In this paper, to more accurately identify the optimal hyperplane in a given uncertain data set, we propose a membership-induced distance from a hyperplane using membership values, and formulate three kinds of membership-induced SVMs.

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Semantic Representation of Concept of Bio-signal Data (생체 신호 데이터의 의미 관계 표현)

  • Moon, Kyung-Sil;Park, Su-Hyun
    • Journal of the Korea Institute of Information and Communication Engineering
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    • v.15 no.2
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    • pp.292-298
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    • 2011
  • In order to acquire new information and biological meaning of the signal data by defining the relationships between them, new modeling technique, ontology, has been proposed. The data of bio-signal can be represented as a systematic and logical to manage continuously bio-signal data using ontology. Furthermore, knowledge of which resources are utilized to provide improved service quality in medical information, health services in various fields. However, relevant studies have not been performed actively to compare importance of relationships between bio-signals. Therefore semantic representation of biometric information should be by defining the relationship between bio-signals. In this paper, we have developed bio-signal ontology to use as a model for using domain knowledge. We verified the usefulness of the ontology by using scenarios.

Challenges in Construction of Omics data integration, and its standardization (농생명 오믹스데이터 통합 및 표준화)

  • Kim, Do-Wan;Lee, Tae-Ho;Kim, Chang-Kug;Seol, Young-Joo;Lee, Dong-Jun;Oh, Jae-Hyeon;Beak, Jung-Ho;Kim, Juna;Lee, Hong-Ro
    • Proceedings of the Korean Institute of Information and Commucation Sciences Conference
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    • 2015.05a
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    • pp.768-770
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    • 2015
  • We performed integration and standardization of the omics data related agriculture. To do this, we requires progressed computational methods and bioinformatics infrastructures for integration, standardization, mining, and analysis. It makes easier biological knowledge to find. we potentialize registration a row and processed data in NABIC (National Agricultural Biotechnology Information Center) and its processed analysis results were offered related researchers. And we also provided various analysis pipelines, NGS analysis (Reference assembly, RNA-seq), GWAS, Microbial community analysis. In addition, the our system was carried out based on the design and build the quality assurance in management omics information system and constructed the infrastructure for utilization of omics analyze system. We carried out major improvement quality of omics information system. First is Improvement quality of registration category for omics based information. Second is data processing and development platform for web UI about related omics data. Third is development of proprietary management information for omics registration database. Forth is management and development of the statistics module producers about omics data. Last is Improvement the standard upload/ download module for Large omics Registration information.

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Bio-inspired neuro-symbolic approach to diagnostics of structures

  • Shoureshi, Rahmat A.;Schantz, Tracy;Lim, Sun W.
    • Smart Structures and Systems
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    • v.7 no.3
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    • pp.229-240
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    • 2011
  • Recent developments in Smart Structures with very large scale embedded sensors and actuators have introduced new challenges in terms of data processing and sensor fusion. These smart structures are dynamically classified as a large-scale system with thousands of sensors and actuators that form the musculoskeletal of the structure, analogous to human body. In order to develop structural health monitoring and diagnostics with data provided by thousands of sensors, new sensor informatics has to be developed. The focus of our on-going research is to develop techniques and algorithms that would utilize this musculoskeletal system effectively; thus creating the intelligence for such a large-scale autonomous structure. To achieve this level of intelligence, three major research tasks are being conducted: development of a Bio-Inspired data analysis and information extraction from thousands of sensors; development of an analytical technique for Optimal Sensory System using Structural Observability; and creation of a bio-inspired decision-making and control system. This paper is focused on the results of our effort on the first task, namely development of a Neuro-Morphic Engineering approach, using a neuro-symbolic data manipulation, inspired by the understanding of human information processing architecture, for sensor fusion and structural diagnostics.

Computer-aided Design and Fabrication of Bio-mimetic Scaffold for Tissue Engineering Using the Triply Periodic Minimal Surface (삼중 주기적 최소곡면을 이용한 조직공학을 위한 생체모사 스캐폴드의 컴퓨터응용 설계 및 제작)

  • Yoo, Dong-Jin
    • Journal of the Korean Society for Precision Engineering
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    • v.28 no.7
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    • pp.834-850
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    • 2011
  • In this paper, a novel tissue engineering scaffold design method based on triply periodic minimal surface (TPMS) is proposed. After generating the hexahedral elements for a 3D anatomical shape using the distance field algorithm, the unit cell libraries composed of triply periodic minimal surfaces are mapped into the subdivided hexahedral elements using the shape function widely used in the finite element method. In addition, a heterogeneous implicit solid representation method is introduced to design a 3D (Three-dimensional) bio-mimetic scaffold for tissue engineering from a sequence of computed tomography (CT) medical image data. CT image of a human spine bone is used as the case study for designing a 3D bio-mimetic scaffold model from CT image data.

In-silico inferences for expression data using IGAM: Applied to Fuzzy-Clustering & Regulatory Network Modeling (연판 지식을 이용한 유전자 발현 데이터 분석: 퍼지 플러스링과 조절 네트웍 모델링에의 응용)

  • Lee, Philhyone;Hojeong Nam;Lee, Doheon;Lee, Kwang H.
    • Proceedings of the Korean Institute of Intelligent Systems Conference
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    • 2004.04a
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    • pp.273-276
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    • 2004
  • Genome-scale expression data provides us with valuable insights about organisms, but the biological validation of in-silico analysis is difficult and often controversial. Here we present a new approach for integrating previously established knowledge with computational analysis. Based on the known biological evidences, IGAM (Integrated Gene Association Matrix) automatically estimates the relatedness between a pair of genes. We combined this association knowledge to the regulatory network modeling and fuzzy clustering in yeast 5. Cerevisiae. The result was found to be more effective for extracting biological meanings from in-silico inferences for gene expression data.

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Bio-Signal Data Collection and Monitoring System Using Time Series DB. (시계열 DB를 이용한 생체신호 데이터 수집 및 모니터링 시스템)

  • Kang, Dong-Yoon;Joo, Moon-Il;Hussain, Ali;Kim, Hee-Cheol
    • Proceedings of the Korean Institute of Information and Commucation Sciences Conference
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    • 2021.10a
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    • pp.211-212
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    • 2021
  • Recently, as interest in health increases, the wearable market that can collect various biometric information is expanding. In addition, telemedicine and healthcare services through these bio-signals are expected to become common. In this paper, we introduce a service that can store bio-signals collected through IoT equipment in a database and monitor them in real time through the web. By implementing a system for collecting and storing biometric data and real-time monitoring, it can be utilized for various health management diagnosis.

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The Study of Relationship on Bio-Aerosol with Indoor Temperature Difference (실내 온도차에 따른 부유세균과의 상관관계 연구)

  • Park, Jin-Young;Kim, Sam-Uel;Yun, Jung-Ki
    • Proceedings of the SAREK Conference
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    • 2008.06a
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    • pp.737-741
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    • 2008
  • The indoor environment has an effect on heath of human in indoor room that they live largely. We will know Bio-Aerosol that causes illness, such as a flu, an asthma and an atopy etc. and see a relationship between Bio-Aerosol and temperature as an experiment in Air-Conditioned room. In the future, this data can use a basic data for an effect of Bio-Aerosol on indoor environment.

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BioPlace: A Web-Based Collaborative Environment for Effective Genome Research

  • Ahn, Geon-Tae;Kim, Jin-Hong;Kang, Kyung-Mi;Lee, Myung-Joon;Han, In-Seob
    • Journal of Microbiology and Biotechnology
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    • v.14 no.5
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    • pp.1081-1085
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    • 2004
  • Genome research has become very popular in most nations. In order to enhance the efficiency of collaboration among genome research groups, ways to store and share data, communicate with each other, be guided through right research strategies, and to easily use well-established databases. In addition, since techniques and softwares for genome research groups are well established, a similar research road map could commonly be applied. In this study, we developed a web-based work place for effective genome research, named 'BioPlace.' From the beginning of writing a proposal, research members can work on the same environment with convenient aid to share files or data. BioPlace provides various ways of collaboration methods among genome researchers. The BioPlace system supports two types of workplaces, namely 'Personal Workspace' and 'Team Workspace.' For each BioPlace user, a Persona] Workspace is provided, while a Team Workspace is provided for each group with the same purpose. In addition, BioPlace provides a 'General Research Road Map' for genome research, and several Korean user interfaces for BLAST, PDB, and Primer3. We expect that BioPlace may facilitate collaboration of genome research among the experienced scientists and help beginners in many different ways as well.

Development of BioEquiv, a Computer Program for the Analysis of Bioequivalence (생물학적동등성시험을 위한 통계처리 프로그램(BioEquiv)의 개발)

  • Yoon, Sang-Hoo;Hwang, Nan-A;Lim, Young-Chai;Lee, Yong-Bok;Park, Jeong-Soo
    • Journal of Pharmaceutical Investigation
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    • v.40 no.1
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    • pp.1-7
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    • 2010
  • K-$BEtest^{(R)}$ is a well known program for bioequivalence test using a $2{\times}2$ design. Lee et al.(1998) and Park et al.(1999) suggested a $3{\times}3$ and $3{\times}2$ design, and also discussed their benefits. We developed a computer program, called BioEquiv, which can analyze some complex experimental designs such as, $3{\times}3$ design and $3{\times}2$ design including a standard $2{\times}2$ design. This program is a user-friendly one and overcomes the disadvantages of K-$BEtest^{(R)}$. The detailed statistical formula and structure of BioEquiv are presented with some examples. The comparison between K-$BEtest^{(R)}$ and BioEquiv are given with actual data analysis. BioEquiv is able to present a table of ANOVA test over some complex experimental designs. Moreover K-$BEtest^{(R)}$ and BioEquiv draw the same result when data consists of $2{\times}2$ design.