• 제목/요약/키워드: Accession

검색결과 408건 처리시간 0.02초

Detection of Co-Infection of Notocactus leninghausii f. cristatus with Six Virus Species in South Korea

  • Park, Chung Hwa;Song, Eun Gyeong;Ryu, Ki Hyun
    • The Plant Pathology Journal
    • /
    • 제34권1호
    • /
    • pp.65-70
    • /
    • 2018
  • Co-infection with two virus species was previously reported in some cactus plants. Here, we showed that Notocactus leninghausii f. cristatus can be co-infected with six different viruses: cactus mild mottle virus (CMMoV)-Nl, cactus virus X (CVX)-Nl, pitaya virus X (PiVX)-Nl, rattail cactus necrosis-associated virus (RCNaV)-Nl, schlumbergera virus X (SchVX)-Nl, and zygocactus virus X (ZyVX)-Nl. The coat protein sequences of these viruses were compared with those of previously reported viruses. CMMoV-Nl, CVX-Nl, PiVX-Nl, RCNaV-Nl, SchVX-Nl, and ZyVX-Nl showed the greatest nucleotide sequence homology to CMMoV-Kr (99.8% identity, GenBank accession NC_011803), CVX-Jeju (77.5% identity, GenBank accession LC12841), PiVX-P37 (98.4% identity, GenBank accession NC_024458), RCNaV (99.4% identity, GenBank accession NC_016442), SchVX-K11 (95.7% identity, GenBank accession NC_011659), and ZyVX-B1 (97.9% identity, GenBank accession NC_006059), respectively. This study is the first report of co-infection with six virus species in N. leninghausii f. cristatus in South Korea.

Cloning and sequence analysis of Wild Argali short palate, lung and nasal epithelium clone 1 cDNA

  • Shen, Wen;Chen, Kaili;Sun, Yanming;Guo, Haiying;Chen, Dongmei;Cao, Yang
    • Asian-Australasian Journal of Animal Sciences
    • /
    • 제30권5호
    • /
    • pp.736-742
    • /
    • 2017
  • Objective: Experiments were conducted to clone the sequence of Wild Argali short palate, lung and nasal epithelium clone 1 (SPLUNC1) cDNA, and to lay the foundation for further study the biological function of Wild Argali SPLUNC1. Methods: The complete sequence of Wild Argali SPLUNC1 cDNA was generated by rapid amplification of cDNA ends. The entire coding sequence was inserted into the pPIC9K vector and expressed in Pichia pastoris (P. pastoris) GS115. The recombinant SPLUNC1 protein was detected by Western blot and purified by $Ni^{2+}$ chelate affinity chromatography. The test of effect of the protein on Mycoplasma ovipneumoniae (MO) was performed with real-time polymerase chain reaction. Results: The Wild Argali SPLUNC1 cDNA was 1,076 bp with an open reading frame of 768 bp, which encoded a 26.49 kDa protein composed of 255 amino acids. Its amino acid sequence shared 98.4%, 96.9%, 94.5%, 90.2%, 80.8%, 78.4%, 78.3%, 72.5%, 72.3%, 68.8% identity with those of SPLUNC1 cDNA from Ovis aries (accession no. NP_001288334.1), Capra hircus (accession no. XP_005688516.1), Pantholops hodgsonii (accession no. XP_005979709.1), Bos taurus (accession no. NP_776851.1), Felis catus (accession no. XP_006929910.1), Homo sapiens (accession no. NP_001230122.1), Sus scrofa (accession no. NP_001005727.1), Chinchilla lanigera (accession no. NP_001269294.1), Mus musculus (accession no. NP_035256.2), and Rattus norvegicus (accession no. NP_742028.1), respectively. The recombinant protein corresponded to the expected molecular mass of 25.47 kDa as judged by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, and it was detected in the supernatant of P. pastoris, and it could be purified. The results from the test of inhibition effect of argali recombinant SPLUNC1 protein on MO showed that the product could inhibit MO very well (p<0.01). Conclusion: The amino acid sequence of Wild Argali SPLUNC1 was different from other organisms. The recombinant SPLUNC1 protein has good biological activity.

Cloning and Sequence Analysis of Wild Argali ISG15 cDNA

  • Sun, Yanming;Chen, Kaili;Shen, Wen;Cui, Rupeng;Lu, Haifu
    • Asian-Australasian Journal of Animal Sciences
    • /
    • 제27권4호
    • /
    • pp.561-566
    • /
    • 2014
  • The complete coding sequence of Wild Argali ISG15 cDNA was generated by rapid amplification of cDNA ends. The ISG15 cDNA was 642 bp with an open reading frame of 474 bp, which encoded a 17.47 kDa protein composed of 157 amino acids. Its amino acid sequence shared 97.9%, 80.8%, 91.4%, 94.3%, 78.3% identity with those of ISG15cDNA from Ovis aries (accession no. NM001009735.1), Capra hircus (accession no. HQ329186.1), Bos taurus (accession no. BC102318.1), Bubalus bubalis (accession no. HM543269.1), and Sus scrofa (accession no. EU647216.1), respectively. The entire coding sequence was inserted into the pET-28a vector and expressed in E. coli. The recombinant protein corresponded to the expected molecular mass of 25 kDa as judged by SDS-PAGE, and it was detected in the bacterial inclusion bodies. The expressed protein could be purified by $Ni^{2+}$ chelate affinity chromatography and the results from the lymphocyte proliferation test showed that the product could stimulate lymphocyte proliferation very well (p<0.05), which further confirmed its biological activity.

Control of Sulfonylurea Herbicide-Resistant Lindernia dubia in Korean Rice Culture

  • Kuk, Yong-In
    • 한국작물학회지
    • /
    • 제47권4호
    • /
    • pp.328-334
    • /
    • 2002
  • A Lindernia dubia (L.) Pennell var. dubia accession from Jeonnam province, Korea was tested for resistance to sulfonylurea (SU) herbicides, imazosulfuron and pyrazosulfuron-ethyl in whole-plant response bioassay. The accession was confirmed resistant to both herbicides. The $GR_{50}$ (herbicide concentration that reduced shoot dry weight by 50%) values of resistant accession were 264 and 19 times higher to imazosulfuron and pyrazosulfuronethyl, respectively, than that of the standard susceptible accession. The surviving resistant L. dubia after pyrazosulfuron-ethyl + molinate application can be controlled by sequential applications of soil-applied herbicides, butachlor, dithiopyr, pyrazolate, and thiobencarb and foliar herbicides, bentazon. Sulfonylurea-based mixtures such as mixtures of azimsulfuron + anilofos, bensulfuron-methyl + oxadiazon, pyrazosulfuron-ethyl + fentrazamide, and pyrazosulfuron-ethyl + anilofos + carfentrazon can also be used to control the surviving resistant L. dubia. However, use of these mixtures should be restricted to a special need basis. Thus, we suggest that sequential applications of non-SU-based mixtures such as butachlor + pyrazolate and MCPB + molinate + simetryne be used to control the surviving resistant L. dubia after SU herbicide applications. Rice yield was reduced 24 % by resistant L. dubia that survived after the pyrazosulfuron-ethyl + molinate application compared with pyrazolate + butachlor in transplanted rice culture. In vitro ALS activity of the resistant biotype was 40 and 30 times more resistant to imazosulfuron and pyrazosulfuron-ethyl, respectively, than the susceptible biotype. Result of in vitro ALS assay that the resistance mechanism of L. dubia to SU herbicides may be due, in part, to an alteration in the target enzyme, ALS.

표준 기록관리시스템의 인수 기능 평가 연계인수를 중심으로 (Evaluation of Accession Function of the Standard Records Management System)

  • 박종연
    • 기록학연구
    • /
    • 제37호
    • /
    • pp.239-271
    • /
    • 2013
  • 표준 기록관리시스템(이하 RMS)은 기록관 또는 특수기록관에서 기록물관리를 전자적으로 수행하는 시스템이다. 그러나 현재 RMS는 일정부분 도입목적 및 사용자의 요구를 충족하지 못하고 있는 실정이다. 이는 사용자에 대한 교육 및 훈련 부족, RMS 세부기능에 대한 검토 부족이 원인이다. 따라서 본 연구는 RMS의 세부기능을 검토하여 RMS에 대한 평가기준을 설정하고 세부기능을 평가하는 것을 목표로 하였다. 특히 RMS의 주요 기능 중 연계인수기능을 평가대상으로 하였다. 본 연구에서 RMS의 연계인수기능을 평가하기 방안으로는 연계인수 기능의 7개의 세부기능을 검토하여 각각의 기능이 수행하는 업무 프로세스를 파악하는 방안을 적용하였다. 그리고 업무 프로세스 파악을 바탕으로 기능요건을 정의하고, 정의된 기능요건으로 체크리스트를 구성하여 기능준수여부를 설문하였다. 마지막으로 설문내용을 바탕으로 연계인수 기능에 대한 기능 구현 현황을 분석한 후 해외기록관리표준과 비교를 통해 RMS의 연계인수기능이 보여주는 시사점과 이에 대한 개선방안을 도출하였다.

서로 다른 지역에서 채집된 Sulfonylurea계 제초제 저항성 물달개비의 제초제 반응 차이 (Differential herbicide response of sulfonylurea-resistant Monochoria vagnalis accessions to sulfonylurea herbicides)

  • 박태선;이인용;박재읍;오세문
    • 농약과학회지
    • /
    • 제11권4호
    • /
    • pp.269-275
    • /
    • 2007
  • 4개의 서로 지역 계통별 sulfonylurea(SU)계 제초제 저항성 물달개비의 저항성 정도 차이를 구명하기 위하여 SU계 제초제들에 대한 식물체 및 acetolactate synthase(ALS) 반응 차이를 감수성 계통과 비교 분석하였다. 나주, 논산, 김제 지역에서 채집된 저항성 물달개비들은 SU계 제초제들의 기준량에서 거의 영향을 받지 않았다. 사용된 SU계 제초제들의 기준량에 대한 나주, 논산, 김제 지역계통의 건물 중 50% 억제 제초제 농도인 $GR_{50}$은 감수성계통(청도) 보다 각각 $8{\sim}33$배, $8{\sim}30$배, $7{\sim}32$배 높게 나타났다. 그러나 김해 채집계통의 $GR_{50}$은 감수성 채집계통에 비해 $4{\sim}13$배 높게 나타나 중간정도의 저항성을 보였다. 나주, 논산, 김제에 대한 ALS 50% 억제 제초제 농도인 $I_{50}$은 감수성 채집계통에 비해 각각 $25{\sim}66$배, $9{\sim}26$배, $10{\sim}24$배 높게 나타났다. 그러나 김해 채집계통의 91%은 감수성 채집계통에 비해 $4{\sim}9$배 높게 나타났다.

한국 서산 간척지 논에서 Sulfonylurea계 제초제에 대한 저항성 새섬매자기 발생 (Identification of Sulfonylurea-Resistant Biotype of Scirpus planiculmis in Reclaimed Paddy Fields, Korea)

  • 박태선
    • 농약과학회지
    • /
    • 제8권4호
    • /
    • pp.332-337
    • /
    • 2004
  • Sulfonylurea계 제초제에 대한 저항성 새성매자기가 한국의 서산 간척지 논에서 발생한 것이 확인되었다. 제초제 저항성 새섬매자기가 발생한 논은 담수직파 양식으로 벼를 재배하여 왔으며, 1990년부터 13년 동안 연속적으로 sulfonylurea계 혼합 제초제를 사용하고 있다. 온실 조건에서 서산과 무안에서 채취한 새섬 매자기 구경을 이식 후 10일에 azimsulfuron, bensulfuron-methyl, cinosulfuron, ethoxysulfuron, imazosulfuron 그리고 pyrazosulfuron-ethyl을 처리하였을 때 무안의 새섬매자기는 각 제초제 추천량에서 방제가 되었으나 서산의 새섬매자기는 추천량의 5배량에서도 20-40% 생존되었다. 생체중 50%를 억제하는 각 제초제의 농도 $(GR_{50})$는 두 지역에서 채취한 새섬매자기 간에 현저한 차이가 있었으며, 서산의 매자기에 대한 6 종류의 $GR_{50}$은 무안의 새섬매자기 대한 $GR_{50}$ 값 보다 $47\sim100$배 높게 나타났다. 또한 무안과 서산의 새섬매자기에서 추출한 acetolactate synthase(ALS)에 대한 pyrazosulfuron-ethyl의 50% 억제 농도$(I_{50})$각각 0.8 nM과 409 nM로 나타나, 서산의 새섬매자기가 무안의 새섬매자기 보다 511배 높은 저항성을 가지고 있음을 확인하였다.

천연 약용식물의 미생물 발효를 통한 장내 메탄 생성 억제 효과 비교 연구 (A Comparative Study between Microbial Fermentation and Non-Fermentation on Biological Activities of Medicinal Plants, with Emphasis on Enteric Methane Reduction)

  • 이아름;박해령;김미소;조상범;최낙진
    • 한국유기농업학회지
    • /
    • 제22권4호
    • /
    • pp.801-813
    • /
    • 2014
  • 본 연구는 반추위 메탄저감용 약용식물 첨가제 개발을 위해 유산균을 이용하여 발효한 두충 및 감초 추출물의 항균활성, 항산화활성 및 in vitro 반추위 발효시험을 실시하였다. 발효 약용식물 추출물 제조를 위해 접종된 종균의 성장효율을 조사하기 위해 실시한 생균수 측정 결과 L. curvatus NJ40, L. brevis NJ42 및 L. plantarum NJ45가 두충과 감초 모두에서 유의적으로 높은 균주 성장을 나타냈다(p<0.05). 항균활성측정 결과는 두충과 감초 추출물에서 공통적으로 L. curvatus NJ40 및 L. plantarum NJ45 로 발효한 추출물이 일부 병원균에 대한 항균효과를 나타내는 것으로 조사되었다. In vitro 반추위 발효시험에서 두충 및 감초발효 추출물을 적용한 결과, 감초 추출물에서 메탄 저감효과가 나타났다. 특히 반추위내 미생물 발효 특성을 대표할 수 있는 휘발성지방산 생성효율을 향상 시키면서, 전반적 반추위 발효에 부정적 영향이 없는 것으로 나타났다.

Diversity of Fungi from Dokdo Island Soil, Korea and Their Antimicrobial and Hydrolytic Enzyme Activity

  • Lee, Hye Won;Lee, Hyang Burm
    • 한국균학회소식:학술대회논문집
    • /
    • 한국균학회 2014년도 추계학술대회 및 정기총회
    • /
    • pp.47-47
    • /
    • 2014
  • Dokdo island is located in the northeastern part of Ulleungdo, known as volcanic island. In total, 53 fungal isolates were isolated from Dokdo island soil sample, using dilution plate technique. The isolates were identified on the basis of morphological characteristics and rDNA ITS sequence analysis. Out of them, 41 isolates were identified at the level of species. The dominant fungal species and genera included Fusarium spp., Mucor sp., Clonostachys spp., and Trichoderma sp. The % sequence identity (the number of matches/the complete alignment length) values via NCBI BLAST searching of EML-IF9, EML-MF30-1 and EML-DDSF4 represented 97.19% (485/499) with Clonostachys cf. rosea (GenBank accession no. KC313107), 98.33% (472/480) with Metarhizium guizhouense (GenBank accession no. HM055445), and 100% (350/350) with Mortierella oligospora (GenBank accession no. JX976032), respectively. Three species of C. rosea, M. guizhouense and M. oligospora represented new records of fungi from Dokdo island, Korea. The antimicrobial activities of the fungal strains varied with tested. Two isolates (EML-MFS30-1 and EML-IF9) showed antifungal activity against several fungi including Fusarium oxysporum and Rhizotonia solani. Clonostachys rosea (EML-IF9) showed strong hydrolytic enzyme activity. Our results showed that the antagonistic fungi including Clonostachys rosea will be used as potential biocontrol agents for control of fungal diseases.

  • PDF

Tobacco mosaic virus Detected in Vegetatively Propagated Petunia Hybrids 'Surfinia'

  • Chung, Bong-Nam;Kim, Jeong-Soo;Cho, Jeom-Deog;Cheong, Seung-Ryong;Jeong, Myeong-Il
    • The Plant Pathology Journal
    • /
    • 제23권1호
    • /
    • pp.34-36
    • /
    • 2007
  • Introduction of vegetatively propagated Petunia hybrids since 1992 led to increasing virus infections of propagation material. Petunia hybrid 'Surfinia' cultivated for pot-plant showed yellowing symptom along with stunt. Flowers were smaller in size and showed color-break symptom. Tobacco mosaic virus(TMV-pet) was isolated from the diseased petunia. Healthy petunia plants inoculated with TMV-pet induced mottle on leaves and color-break on flowers, and plants were stunted. Nucleotide sequences of coat protein gene amplified from RNA prepared from Nicotiana tabacum cv. Samsun infected with TMV-pet were determined(GenBank accession no. DQ981481). It showed 99.0% nucleotide sequence homology with TMV-potato3-2(GenBank accession no. AF318215) isolated from potato showing yellow mosaic and stunt symptom, and with a TMV Korean strain(GenBank accession no. X68110). This is the first reported observation of TMV from vegetatively propagated petunia in Korea.