• Journal of Plant Biotechnology
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• v.37 no.4
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• pp.394-399
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• 2010

During the last three years (2007 to 2009), 1,212 articles of SCI journals, 451 articles of non-SCI journals, and 348 items of registered patents were reported by the research scientists involved in the BioGreen 21 Project, Rural Development Administration and Crop Functional Genomics Center (CFGC), The 21st century Frontier Program, in Korea. Out of these, the percentages of articles or patents directly related to the development of GM plants were 6.0% (SCI), 10.2% (non-SCI) and 12.6% (patents) from BioGreen 21 Project while 15.7% (SCI), 21.1% (non-SCI) and 81.6% (patents) from CFGC, respectively. It was observed that rice and pepper were major host crops for genetic modification mainly to provide the resistance or tolerance activities against to biotic as well as abiotic stresses. Very low cases were reported for the field test of GM plants regarding to the commercialization (less than 15 articles). These observations indicates that more research grants needs to be invested for the risk assessment of GM plants under early developmental stage to commercialize in Korea.

• Journal of Plant Biotechnology
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• v.35 no.2
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• pp.101-108
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• 2008

The Agrobacterium-mediated transformation has been successfully used method to introduce foreign genes into some monocotyledonous as well as a large number of dicotyledonous plants genome, We developed transgenic Chinese cabbage plants with insect-resistance gene, modified CryIAc, by Agrobacterium-transformation and confirmed transgene copy number by Southern blot analysis. We confirmed that twenty-nine out of 46 transgenic Chinese cabbage plants have single copy of CryIAc. To obtain the sequences information on the transferred DNA (T-DNA) integration into plant genome, we analyzed left border (LB) flanking sequences by genome walking (GW) PCR method. Out of 46 transgenic Chinese cabbage plants examined, 37 carried the vector backbone sequences. This result indicates that the transfer of the vector backbone from the binary vectors resulted mainly from inefficient termination of LB site. Analysis of T-DNA LB flanking region of 9 transgenic Chinese cabbage plants without vector backbone revealed that all LB ends were not conserved and nucleotides up to 36bp from the LB cleavage site were deleted.

• Journal of Life Science
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• v.24 no.11
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• pp.1174-1179
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• 2014

This research was carried out to evaluate whether gamma ray is a useful tool for breeding new strains of mushrooms. For this research, 5 mutant groups, 20 strains of Hypsizigus marmoreus, 2 strains of Lyophyllum decastes, and 1 strain of Lyophyllum shimeji were used. Monokaryon spores from one variety of H. marmoreus were irradiated with 50~2,000 Gy of gamma ray. The propriety dose was 50~200 Gy for mutagenesis. Mutant monokaryon mycelia crossed each order to become dikaryon mycelia. The internal transcribed spacer (ITS) regions of rDNA were amplified using PCR, and the products were sequenced. The sequences of the ITS regions (16 partial rDNA, complete ITS1, 5.8 rDNA and partial rDNA) were analyzed by PCR, and strains of H. marmoreus, L. decastes, and L. shimeji were auto-sequenced. The lengths of the sequenced ITSs were 1,052~1,143 nucleotides. Genetic matrices were calculated using Nei-Li's genetic distance coefficient based on ITS sequence. The dissimilarities were 0~3.35% in strains of H. Hypsizigus. In addition, a phylogenetic tree was constructed based on ITS sequences using the neighbor-joining (NJ) method. The phylogenetic tree revealed that 23 strains and 5 mutant groups were divided into 12 clusters; the mutant groups fell into different clusters. These results show that mushroom spores were mutated effectively by gamma ray; therefore, gamma ray could be a useful tool for breeding new strains of mushrooms.

• Journal of Plant Biotechnology
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• v.33 no.2
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• pp.85-91
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• 2006

Flavanone 3$\beta$-hydroxylase (FHT) is an enzyme acting in the central part of the flavonoid biosynthesis pathway. FHT catalyses the hydroxylation of flavanone to dihydroflavonols in the anthocyanin pathway. In this paper we describe the cloning and expression of the genes encoding the flavonoid-biosynthetic enzyme FHT in Gypsophila paniculata L. A heterologous cDHA probe from Dianthus cavophyllus was used to isolate FHT-encoding cDHA clones from Gypsophila paniculata L.. Inspection of the 1471 bp long sequence revealed an open reading frame 1047 bp, including a 190 bp 5' leader region and 288 bp 3' untranslated region. Comparison of the coding region of this FHT cDHA sequence including the sequences of Arabidopsis thaliana, Citrus sinensis, Dianthus caryophyllus, Ipomoea batatas, Matthiola incana, Nierembergia sp, Petunia hybrida, Solanum tuberosum, Vitis vinifera reveals a identity higher than 69% at the nucleotide level. The function of this nucleotide sequences were verified by comparison with amino acid sequences of the amino-terminus and tryptic peptides from purified plant enzyme, by northern blotting with mRHA from wild type and mutant plants, by in vitro expression yielding and enzymatically active hydroxylase, as indicated by the small dihydrokaempferol peak. Genomic southern blot analysis showed the presence of only one gene for FHT in Gypsophila paniculata.

• Korean Journal of Agricultural Science
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• v.36 no.2
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• pp.159-165
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• 2009

This study was conducted to identify the PERV (Porcine Endogenous Retrovirus) integration sites and their characterizations using the porcine genomic sequence information. Total 114 Mb (4.2%) sequence of the 2.7 Gb pig genome was investigated for the PERV sequences. As the results, 8 PERV sequences were identified and their genomic structures were deduced from the BLAST searches against previously known PERV genes. Seven PERVs have internal deletions in the protein coding region and they will not be functional. The other one also has internal deletions in the gag and env genes, indicating this PERV is also defective. Even though we could not identify the functional PERVs in this study, the results presented here can be used for the fundamental research materials for controlling PERV infections in relation to xenotransplantation using porcine organs and tissues.

• Journal of IKEEE
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• v.3 no.1 s.4
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• pp.86-92
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• 1999

A rigorous modal transmission-line theory (MTLT) based on effective dielectric method (EDM) is introduced and developed for the design of optical directional couplers with rib-type. This approach provides a rigorous numerical algorithm that takes all the possible guided components into consideration, and thus may serve as an appropriate reference to access the accuracy of such simplified methods as effective index method (EIM) and perturbation theory. Consequently, to search the optical parameters for maximum power coupling of the optical couplers, we evaluate the operating wavelength, the interval S between rib guides and the thickness t of a cladding layer.

• Proceedings of the Korea Inteligent Information System Society Conference
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• 2007.05a
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• pp.341-350
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• 2007

DNA 염기 서열 배치 알고리즘은 분자 생물학 분야에서 단백질과 핵산 서열들의 분석에서 중요한 방법이다. 생물학적인 염기 서열들은 그들 사이의 유사성과 차이점을 나타내기 위해 정렬된다. 본 논문에서는 기존의 DNA 염기 서열 배치 방법을 개선하기 위하여 DP(Dynamic Programming) 알고리즘의 비용증가( O (nm) ) 문제를 해결하는 Quadrant 방법과 품질 정보 및 퍼지 추론시스템(fuzzy inference system)을 적용한 DNA 염기 서열 배치 알고리즘을 제안한다. 본 논문에서 제안한 DNA 염기 서열 배치 알고리즘은 Quadrant 방법을 적용하여 Needleman-Wunsch의 DP 기반 알고리즘에서의 행렬 생성 단계에서 발생하는 불필요한 정렬 계산을 제거하여 전체 수행 시간을 단축하고, 각 DNA 염기 서열 단편 각각의 길이 차이와 낮은 품질의 DNA 염기 빈도를 퍼지 추론 시스템에 적용하여 지능적으로 갭 비용(gap cost)을 동적으로 조정한다. 제안된 알고리즘의 성능 평가를 위해 NCBI (National Center for Biotechnology Information)의 실제 유전체 데이터로 성능을 분석한 결과, 제안된 알고리즘이 기존의 품질정보만을 이용한 알고리즘보다 개선된 것을 확인하였다.

• The Journal of the Institute of Internet, Broadcasting and Communication
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• v.12 no.3
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• pp.217-222
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• 2012

Using modal transmission-line theory (MTLT), it explores rigorously the polarization characteristics of plasmonic optical polarizer. To verify the validity of the approach proposed in this paper, a novel polarization condition, which is called mode suppression ratio, is defined. The numerical results reveal that the polarization length of plasmonic optical polarizer is $10{\mu}m$ dramatically shorter than that of conventional dielectric optical polarizer. Furthermore, the insertion loss of plasmonic polarizer consisting of metal Ag is small enough to be neglected below -1dB.

• Journal of IKEEE
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• v.7 no.1 s.12
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• pp.16-21
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• 2003

A rigorous modal transmission-line theory (MTLT) based on effective dielectric method (EDM) is introduced and developed to analyze the polarization beam-splitting of optical rib-type directional coupler with three guiding layers. Furthermore, to confirm the validity of approach proposed in this paper, we compare our results with those ones of BeamPROP, which is a commercial software package used widely. Consequently, the numerical results reveal that the hybrid modes incident into a guiding channel of rib-type coupler are split well through upper and lower guiding channels in a polarization length.

• Journal of the Korean Vacuum Society
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• v.11 no.3
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• pp.141-150
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• 2002

Titanium oxide thin films were deposited by DC reactive magnetron sputtering(RMS) with Ar ion-beam assistance using end-Hall ion source at low oxygen partial pressure and long target-to-substrate distance. The optical and structural properties of deposited films were investigated by the measurement of measured transmittance and reflectance, atomic force microscope(AFM), and X-ray diffraction(XRD). The results show that the Ax ion-beam assisted RMS for titanium oxide thin films induces the higher packing density, lower absorption, and smoother surface than the conventional RMS, suggesting that it can be employed in deposition of optical dielectric coatings.