• Title/Summary/Keyword: 분자량분포

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Improvement of protein identification performance by reinterpreting the precursor ion mass tolerance of mass spectrum (질량스펙트럼의 펩타이드 분자량 오차범위 재해석에 의한 단백질 동정의 성능 향상)

  • Gwon, Gyeong-Hun;Kim, Jin-Yeong;Park, Geon-Uk;Lee, Jeong-Hwa;Baek, Yung-Gi;Yu, Jong-Sin
    • Bioinformatics and Biosystems
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    • v.1 no.2
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    • pp.109-114
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    • 2006
  • In proteomics research, proteins are digested into peptides by an enzyme and in mass spectrometer, these peptides break into fragment ions to generate tandem mass spectra. The tandem mass spectral data obtained from the mass spectrometer consists of the molecular weights of the precursor ion and fragment ions. The precursor ion mass of tandem mass spectrum is the first value that is fetched to sort the candidate peptides in the database search. We look far the peptide sequences whose molecular weight matches with precursor ion mass of the mass spectrum. Then, we choose one peptide sequence that shows the best match with fragment ions information. The precursor ion mass of the tandem mass spectrum is compared with that of the digested peptides of protein database within the mass tolerance that is assigned by users according to the mass spectrometer accuracy. In this study, we used reversed sequence database method to analyze the molecular weight distribution of precursor ions of the tandem mass spectra obtained by the FT LTQ mass spectrometer for human plasma sample. By reinterpreting the precursor ion mass distribution, we could compute the experimental accuracy and we suggested a method to improve the protein identification performance.

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Preparation and Characterization of Highly Pured Water-soluble Chitosan Oligosaccharides as Biomaterials (생체재료로서의 고순도 수용성 키토산 올리고당의 제조와 특성)

  • Park, Jun-Kyu;Choi, Changyong;Nam, Joung-Pyo;Park, Seong-Cheol;Park, YungHoon;Jang, Mi-Kyeong;Nah, Jae-Woon
    • Polymer(Korea)
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    • v.38 no.1
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    • pp.85-92
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    • 2014
  • To develop water-soluble chitosan as an effient gene delivery carrier, chitosan oligosaccharides (COSs) with various molecular weights (MW) were studied for gene transfection agents. MWs of COSs fractionated by ultrafiltration techniques were identified as narrow MW distributions with the average MW ranging from 1 to 10 kDa through gel permeation chromatography (GPC) measurement depending on the applied ultrafiltration membranes. Their structural characterizations were analyzed by FTIR spectrophotometer and $^1H$ NMR. The degree of deacetylation was determined by UV spectroscopy showing the degree of deacetylation above 90%. The relative cell viabilities were maintained over 100% (10 mg/mL), independent of the MW of the fractionated COSs. The fractionated COSs of 10 mg/mL concentration with narrow MW distributions showed non-cytotoxicity in Caco-2 cells.

Control of Molecular Weight Properties of Polycarbonate using End Capping Agents (말단캡핑제를 이용한 폴리카보네이트의 분자량 특성 조절)

  • Lee, Bom Yi;Kim, Youn Cheol
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.14 no.3
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    • pp.1512-1518
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    • 2013
  • Polycarbonates (PCs) with six different end capping agents were synthesized from melt polymerization. Chemical structure of the synthesized PC was determined by FT-IR spectroscopy. The average molecular weight and distribution, glass transition and thermal degradation temperatures were determined by GPC, DSC and TGA. Average molecular weight changed with the chemical structure of end capping agent, and 4-tert-butylphenol was estimated as the optimum end capping agent. The average molecular weights of PCs decreased with the concentration of the agent, the number average molecular weight was observed as 20,000 - 30,000 when 0.05-0.15 mol% of 4-tert-butylphenol added in PCs. The melt viscosities and glass transition temperature of the PCs decreased with molecular weight. The change for adding method of the agent affected on both the molecular weight distribution and decrease in power law index.

Effect of Solubilization Conditions on Molecular Weight Distribution of Enzymatically-Hydrolyzed Silk Peptides (실크의 가용화 조건이 효소분해 실크 펩타이드의 분자량 분포에 미치는 영향)

  • 채희정;인만진;김의용
    • KSBB Journal
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    • v.13 no.1
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    • pp.114-118
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    • 1998
  • The effects of fibron solubilization conditions on molecular weight distribution of enzymatically-hydrolyzed silk peptides were investigated. The weight-averaged molecular weights of silk proteins prepared by solubilization with calcium chloride, ethylenediamine and sulfuric acid were 41600, 3308, and 1268 dalton, respectively. Silk peptides in the average molecular weight range of 600-1200 dalton were obtained by protease treatment from solubilized silk fibroin. After the acid hydrolysis of silk protein using hydrochloric acid for 24 hr, silk protein was hydrolyzed to peptides whose average molecular weight and free amino acid content were 145 dalton and 80%, respectively. It was possible to control molecular weight distribution of silk peptides by the combination of solubilization and hydrolysis methods. Among the various treatment methods, acid solubilization followed by protease treatment had an advantage of molecular weight control for the peptide production.

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Study on Solution Polymerization Behaviors by Mixed Aluminium Compound Catalysts (알루미늄 화합물 혼합촉매계의 L-lactide 용액중합 특성 연구)

  • Yoo, Ji-Yun;Kim, Da-Hee;Ko, Young-Soo
    • Polymer(Korea)
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    • v.36 no.5
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    • pp.593-598
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    • 2012
  • Solution polymerization behaviors of L-lactide using single and mixed aluminium catalyst systems were studied. Triisobutylaluminium (TIBA) was a reference catalyst for mixing. For the $Al(O-i-Pr)_3$/TIBA catalytic systems, the molecular weight of the resulting polylactide (PLA) decreased as the composition of $Al(O-i-Pr)_3$ increased. The higher molecular weight shoulder was revealed in their GPC curve. At TIBA of 80 mol% a bimodal GPC curve was shown. The conversion in the trimethylaluminium (TMA)/TIBA catalysts system decreased as the composition of TMA in the mixed catalyst increased. The conversion in the trioctylaluminium (TOA)/TIBA catalysts system decreased as the composition of TOA in the mixed catalyst increased. The unimodal molecular weight distribution was observed with the TOA/TIBA catalyst systems. The Al compounds-mixed catalyst could produce a higher molecular weight shoulder in the GPC curve.

Mechanism of Dextran Synthesis by Dextransucrase (Dextransucrase에 의한 Dextran 생성기작에 관한 연구)

  • 윤명희;구윤모
    • KSBB Journal
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    • v.9 no.1
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    • pp.1-7
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    • 1994
  • A qualitative study was made on the mechanism of dextran synthesis by dextransucrase. Enzymatic synthesis of dextran was experimentally studied with initial sucrose concentration from 50g/$\ell$ to 150g/$\ell$. The molecular weight distribution of synthesized dextran was measured by using on-line gel Permeation chromatographic system Sucrose was observed not to work as a primer within the range of concentration tested. At the initial sucrose concentration of 50g/$\ell$, dextran with molecular weight of medium range ($10^4-2{\times}10^6$) was synthesized due to the mass transfer limitation of sucrose. The amount of the dextran of medium range decreased with the initial sucrose concentration. Dextran was likely to be synthesized by radical chain polymerization mechanism since the dextran of medium range was not produced at higher sucrose concentrations.

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