• Title/Summary/Keyword: 변이성

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Induction and Chatacterization of pKM101 Mutants in Salmonella typhimurium (Salmonella typhimurium내로의 pKM101 돌연변이체의 유도와 그 특성에 관한 연구)

  • 백형석;강수형;이세영
    • Korean Journal of Microbiology
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    • v.20 no.2
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    • pp.89-97
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    • 1982
  • Mutants of plasmid pKM101 modified to enhance mutagenesis were induced and characterized in Salmonella typhimurium. The pKM101 mutant plasmid were transferred normally and stably maintained in cells. They had modified in their ability (i) to enhance the reversion of both point and frameshift mutations, (ii) to protect the cell against UV-irradiation and chemical mutagen treatment, (iii) of ampicillin resistance. A similar modification in enhancement of reversion was also observed in a $uvrB^-$ strains. These results indicated that mutator effect of pKM101 was coded by one plasmid gene.

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Identification of Substrate Specificity Determinant of Achromobacter Protease I (API) and Catalytic Activity of Mutant D225E for Ornithine Substrate (Achromobacter Protease I (API)의 기질특이성 결정기의 동정과 변이체[D225E]의 Ornithine 기질에 대한 촉매활성)

  • Lim, Seong-Il;Kwon, Oh-Jin;Choi, Cheong
    • Applied Biological Chemistry
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    • v.40 no.3
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    • pp.189-195
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    • 1997
  • The structural basis of Iysine specificity of Achromobacter protease I (API) was investigated by means of site-directed mutagenesis. The precursor protein in which Glu190, one of the two candidates for determining Iysine specificity, was substituted by glutamine, aspartic acid or leucine was processed autocatalytically to attaln full pretense activity with lysine specificity. The substitution of the other candidate, Asp225, for asparagine or leucine produced no mature active forms of pro-API. The precursor protein of the mutant D225E slowly matured autocatalytically. The lysylendopeptidase activity of the mature D225E was 0.25% of that of native API, and this reduced activity is mainly due to a decrease in the affinity of the enzyme for lysine. These results suggest that Asp225 plays a critical rol in restricted substrate specificity as a lysylendopeptidase. However, D225E exhibited no measurable activity for synthetic ornithine substrate. Since the hydroxyl group of Ser194 in this mutant retained essentially the same reactivity to DFP or PMSF as that in native API, it can be noted that a methylene unit longer side chain of residue 225 is not compensated by a methylene unit shorter side chain at subsite P1 in the bound substrate.

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Effect of Sequence Variation in Mitochondrial DNA D-loop Region on Milk and Milk Fat Production in Holstein Cows (Holstein의 유량과 유지방 생산에 미치는 Mitochondrial DNA D-loop 영역의 염기 서열 변이 효과)

  • Oh J. D.;Kong H. S.;Lee H. K.;Jeon G. J.
    • Reproductive and Developmental Biology
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    • v.29 no.1
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    • pp.9-13
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    • 2005
  • This study was performed to analyze the sequence variation in mtDNA D-loop and their effects on milk and milk fat production in Holstein cows. The analyzed sequences were compared with previously published sequences from other cattle breeds (GenBank J01394). PCR was performed to amplify a total of 964 bp between nucleotide 15758 and 383 within D-loop region of mtDNA using specific primers. Thirty five polymorphic sites by nucleotide substitution were found in mtDNA. The frequencies of positions at 106, 169, 16057, 16231 and 16255 nt with high levels of sequence polymorphism were 0.090, 0.555, 0.055, 0.090 and 0.050, respectively. The substitution effect at 169 nt was found significant on milk production, and substitution effect at 16118, 16139 and 16302 nt was highly significant (p<0.1) on milk fat production. Polymorphism of mtDNA sequence in D-loop region might be useful for the analysis of cytoplasmic genetic variation and associations with the other economically important traits and maternal lineage analysis in Holstein cows.

Andic Properties of Major Soils in Cheju Island II. Electric Charge Characteristics (제주도(濟州島) 대표토양(代表土壤)의 Andic 특성(特性)에 관한 연구 II.전하특성(電荷特性))

  • Song, Kwan-Cheol;Yoo, Sun-Ho
    • Korean Journal of Soil Science and Fertilizer
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    • v.24 no.4
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    • pp.241-247
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    • 1991
  • Electric charge characteristics of volcanic ash soils in Cheju Island were investigated. For this study, soils of toposequence distributed along the sourthern slope of Mt. Halla, and the major soil groups such as dark brown soils, very dark brown soils, black soils, and brown forest soils were collected and analyzed for extratable acidity, KCl ext. Al, CEC, base saturation, permanent charge and variable charge, etc.. Weolpyeong and Yongheung soils developed on the lower elevations have high $NH_4OAc$ ext. bases, permanent charge and base saturation, and relatively low ext. acidity, CEC and variable charge. For other soils, whose colloidal fractions are dominated by allophane or Al-humus complexes, ext. acidity, CEC, variable charge, and variable charge ratio were very high, and $NH_4OAc$ ext. bases, permanent charge, and base saturation were very low. These trends were especially prominant in the surface. horizons of black soils and brown forest soils dominated by Al-humus complexes. Ext. acidity, CEC($NH_4OAc$), CEC(sum of cations), and variable charge strongly correlated with pyrophosphate ext. carbon. Very dark brown soils and cinder cone soils dominated by allophane showed low KCl ext. Al and relatively high pH, despite their very low base saturation.

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Desmutagenic Effect of Water Extract from Cassia tora L. on the Mutagenicity of N-methyl-N-nitro-N'-nitrosoguanidinein in E. coli PQ37 (N-methyl-N-nitro-N'-nitrosoguanidine의 변이원성에 대한 결명자 물 추출물의 항돌연변이 효과)

  • Ahn, Byung-Yong
    • Journal of Food Hygiene and Safety
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    • v.24 no.1
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    • pp.46-49
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    • 2009
  • The desmutagenic activity of the water extract of Cassia tara L on the mutagenicity induced by 4-nitroquinoline 1-oxide (4-NQO) and N-methyl-N-nitro-N'-nitrosoguani-dine (MNNG) was studied using the SOS Chromotest with Escherichia coli PQ37. The inhibition rates of water extract of Cassia tara L. at concentration of $100{\mu}g$/assay were 27.5% and 40% against 4-NQO and MNNG. The water extract of Cassia tara L. was separated into methanol soluble and methanol insoluble parts. The methanol soluble part exhibited higher inhibition effects than the methanol insoluble part against the mutagenic activities of 4-NQO and MNNG. Step-wise fractionation of methanol soluble part was done to obtain methanol, ethyl acetate and water fractions. Among these fractions, water fraction had the strongest inhibitory effects of 23.0 and 19.0% against mutagenicities of MNNG and 4NQO, respectively. The results clearly indicated that the water fraction showed much stronger antimutagenicity against MNNG than 4NQO. The inhibition rates of aqueous fraction of methanol-soluble from water extracted Cassia tara L. at concentrations of 1.0, 10, 100 and $250{\mu}g$/assay were 8.0%, 12.0%, 25.5% and 43.0%, respectively. The water fraction showed the inhibitory effects with dose response against the mutagenic activities induced by MNNG.

Direct detection of hemophilia B F9 gene mutation using multiplex PCR and conformation sensitive gel electrophoresis (Multiplex PCR과 Conformation Sensitive Gel Electrophoresis를 이용한 혈우병B F9 유전자 돌연변이 직접 진단법)

  • Yoo, Ki Young;Kim, Hee Jin;Lee, Kwang Chul
    • Clinical and Experimental Pediatrics
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    • v.53 no.3
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    • pp.397-407
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    • 2010
  • Purpose : The F9 gene is known to be the causative gene for hemophilia B, but unfortunately the detection rate for restriction fragment length polymorphism-based linkage analysis is only 55.6%. Direct DNA sequencing can detect 98% of mutations, but this alternative procedure is very costly. Here, we conducted multiplex polymerase chain reactions (PCRs) and conformation sensitive gel electrophoresis (CSGE) to perform a screened DNA sequencing for the F9 gene, and we compared the results with direct sequencing in terms of accuracy, cost, simplicity, and time consumption. Methods : A total of 27 unrelated hemophilia B patients were enrolled. Direct DNA sequencing was performed for 27 patients by a separate institute, and multiplex PCR-CSGE screened sequencing was done in our laboratory. Results of the direct DNA sequencing were used as a reference, to which the results of the multiplex PCR-CSGE screened sequencing were compared. For the patients whose mutation was not detected by the 2 methods, multiplex ligation-dependent probe amplification (MLPA) was conducted. Results : With direct sequencing, the mutations could be identified from 26 patients (96.3%), whereas for multiplex PCRCSGE screened sequencing, the mutations could be detected in 23 (85.2%). One patient's mutation was identified by MLPA. A total of 21 different mutations were found among the 27 patients. Conclusion : Multiplex PCR-CSGE screened DNA sequencing detected 88.9% of mutations and reduced costs by 55.7% compared with direct DNA sequencing. However, it was more labor-intensive and time-consuming.

Comparison of Optimum Plot Size and Shape in Branching and Branchless Type of Soybean Varieties (소지성과 다지성대두품종의 최적시험구 크기와 모양비교)

  • Shin-Han Kwon;Kun-Hyuk Im
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.19
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    • pp.39-46
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    • 1975
  • The optimum plot size and shape for soybean yield trials were estimated by using two different soybean varieties, Kumkang-daelip and Clark. Long narrow shape plot was generaIly showed lower C.V. value as compared to the plots consisted of more row number with short row length. The results obtained in this experiment provided the optimum size and shape of plots for Clark as 1. 4m x 6m, and for Kumkang-dailip as 1.4m $\times$ 9m, respectively.

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Analysis of Deep Learning Model Vulnerability According to Input Mutation (입력 변이에 따른 딥러닝 모델 취약점 연구 및 검증)

  • Kim, Jaeuk;Park, Leo Hyun;Kwon, Taekyoung
    • Journal of the Korea Institute of Information Security & Cryptology
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    • v.31 no.1
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    • pp.51-59
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    • 2021
  • The deep learning model can produce false prediction results due to inputs that deviate from training data through variation, which leads to fatal accidents in areas such as autonomous driving and security. To ensure reliability of the model, the model's coping ability for exceptional situations should be verified through various mutations. However, previous studies were carried out on limited scope of models and used several mutation types without separating them. Based on the CIFAR10 data set, widely used dataset for deep learning verification, this study carries out reliability verification for total of six models including various commercialized models and their additional versions. To this end, six types of input mutation algorithms that may occur in real life are applied individually with their various parameters to the dataset to compare the accuracy of the models for each of them to rigorously identify vulnerabilities of the models associated with a particular mutation type.

Properties of Acid Tolerance of Acid-Resistant Mutant Leuconostoc mesenteroides Which Was Improved as Kimchi Starter. (김치 starter용으로 개량된 내산성 변이주 Leuconostoc mesenteroides의 내산성 특성)

  • 김영찬;정은영;김은해;정대현;정선호;이동희;권태종;강상모
    • Microbiology and Biotechnology Letters
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    • v.26 no.2
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    • pp.102-109
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    • 1998
  • To investigate the increased acid tolerance of a acid-resistant mutant Leuconostoc mesenteroides M-100 improved as a kimchi starter, proton permeability, ATPase acitivity, glycolysis activity, $Mg^{2+}$ releasement, and membrane fatty acid composition were studied and comprised with its wild type Leuconostoc mesenteroides Mw. In the proton permeability experiment, the mininum values of the average half time ($t_{1/2}$) of pH equilibration through the cell membrane of the Mw and the M-100 were about 8.6 min and 9.2 min in 150 mM KCI solution, respectivily. In the 3% NaCl solution, the $t_{1/2}$ values of the Mw and the M-100 were 6min and 8.6 min, respectivily. The values and pHs of maximal specific activities of ATPase originated from the Mw and the M-100 were 0.6U at pH 5.5 and 0.8U at pH 5.5, respectivily. The result of pH dependence of glycolysis showed that the M-100 had higher activities than that of Mw except at pH 5.0. The releases of magnesium from the Mw and the M-100 were observed about 36.5% and 13% at pH 4.0 after 2 hours, respectivily. The results of comparison of membrane fatty acid composition of the Mw with the M-100 showed that $C_{12}$, $C_{14}$, $C_{18:1}$, and $C_{19:0cyclo}$ were major different fatty acids between two strains and the content of $C_{18:1}$, and $C_{19:0cyclo}$ were 23.4%, 10.2% in the Mw and 15.1%, 12.2% in the M-100. These results indicated that acid tolerance of the M-100 was significantly improved in comparison with its wild type Mw.

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A Quadtree-based Disparity Estimation for 3D Intermediate View Synthesis (3차원 중간영상의 합성을 위한 쿼드트리기반 변이추정 방법)

  • 성준호;이성주;김성식;하태현;김재석
    • Journal of Broadcast Engineering
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    • v.9 no.3
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    • pp.257-273
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    • 2004
  • In stereoscopic or multi-view three dimensional display systems, the synthesis of intermediate sequences is inevitably needed to assure look-around capability and continuous motion parallax so that it could enhance comfortable 3D perception. The quadtree-based disparity estimation is one of the most remarkable methods for synthesis of Intermediate sequences due to the simplicity of its algorithm and hardware implementation. In this paper, we propose two ideas in order to reduce the annoying flicker at the object boundaries of synthesized intermediate sequences by quadtree-based disparity estimation. First, new split-scheme provides more consistent auadtree-splitting during the disparity estimation. Secondly, adaptive temporal smoothing using correlation between present frame and previous one relieves error of disparity estimation. Two proposed Ideas are tested by using several stereoscopic sequences, and the annoying flickering is remarkably reduced by them.