• Title/Summary/Keyword: 꼬막

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Chromosomal Assembly of Tegillarca granosa Genome using Third-generation DNA Sequencing and Hi-C Technology (3세대 DNA 염기서열 분석과 Hi-C기술을 이용한 꼬막 게놈의 유전체 연구)

  • Kim, Jinmu;Lee, Seung Jae;Jo, Euna;Choi, Eunkyung;Cho, Minjoo;Shin, So Ryung;Lee, Jung Sick;Park, Hyun
    • Journal of Marine Life Science
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    • v.6 no.2
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    • pp.97-105
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    • 2021
  • Tegillarca granosa, is one of the most important fishery resources throughout Asia. However, due to industrialization factories, marine environmental pollution, and global warming, the marine fishery production has drop sharply. In order to understand the genetic factors of the blood clam, which is a major fishery resource on the southern coast of Korea, the whole genome of blood clam was studied. The assembled genome of T. granosa was 915.4 Mb, and 19 chromosomes were identified. 25,134 genes were identified, and 22,745 genes were functionally annotated. As a result of performing gene gain and loss analysis between the blood clam genome and eight other types of shellfish, it was confirmed that 725 gene groups were expanded, and 479 gene groups were contracted. The homeobox gene cluster of blood clam showed a well-preserved genetic structure within lophotrochozoan ancestor. T. granosa genome showed high similarity between three hemoglobin genes with Scarpharca broughtonii. The blood clam genome will provide information for the genetic and physiological characteristics of blood clam adaptation, evolution, and the development of aquaculture industry.

Origin and Developing Process of Ark-shell Culture Industry in Korea (우리나라 꼬막양식업의 발상과 발달과정)

  • BAE Su-Whan
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.19 no.1
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    • pp.72-82
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    • 1986
  • There were three important species among the marine organisms which were cultured in the inter tidal zone in the old days, and an ark-shell was one of them. Exaiming old books and reports concerning fishery were made in order to reveal the history and industrial trend of ark-shell culture. Ark-shell was called by the different names in the old days "Komak" and "Sohap". The name of Komak was originated in the southern coast area in the 1,700s, and from the begining of 18 century Komak was used only. Ark-shell was produced in all southern and western coast areas, where a little of fresh water flows into the calm inner sea and the intertidal zone is well developed. It was well known that ark-shells shell as well as its flesh took the effect of a medicine. Its culturing method in Korea seems to be derived from China in the beginning of 19 century, it was cultured first at the southern area of Chollanam-do. It was considered as the side business, but after Korean war it is produced on the basis of cooperative work, now its production is quite increased (more than $5,000\fra{M}{T}$) due to the goverments development policy.

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Genome Survey and Microsatellite Marker Selection of Tegillarca granosa (꼬막(Tegillarca granosa)의 유전적 다양성 분석을 위한 드래프트 게놈분석과 마이크로새틀라이트 마커 발굴)

  • Kim, Jinmu;Lee, Seung Jae;Jo, Euna;Choi, Eunkyung;Kim, Hyeon Jin;Lee, Jung Sick;Park, Hyun
    • Journal of Marine Life Science
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    • v.6 no.1
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    • pp.38-46
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    • 2021
  • The blood clam, Tegillarca granosa, is economically important in marine bivalve and is used in fisheries industry among western Pacific Ocean Coasts especially in Korea, China, and Japan. The number of chromosomes in the blood clam is known as 2n=38, but the genome size and genetic information of the genome are not still clear. In order to predict the genomic size of the T. granosa, the in-silico analysis analysed the genomic size using short DNA sequence information obtained using the NGS Illumina HiSeq platform. As a result, the genomic size of T. granosa was estimated to be 770.61 Mb. Subsequently, a draft genome assembly was performed through the MaSuRCA assembler, and a simple sequence repeat (SSR) analysis was done by using the QDD pipeline. 43,944 SSRs were detected from the genome of T. granosa and 69.51% di-nucleotide, 16.68% trinucleotide, 12.96% tetra-nucleotide, 0.82% penta-nucleotide, and 0.03% hexa-nucleotide were consisted. 100 primer sets that could be used for genetic diversity studies were selected. In the future, this study will help identify the genetic diversity of T. granosa and population genetic studies, and further identify the classification of origin between homogenous groups.

Changes in planktonic bivalve larvae of Tegillarca granosa and Anadara kagoshimensis in the Boseong coastal waters of South Korea (보성 연안해역에서 꼬막과 새꼬막 부유유생 출현의 변화)

  • Kim, Hyun-Jung;Kang, JunSu;Jung, Seung Won;Park, Yong-Joo
    • Korean Journal of Environmental Biology
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    • v.37 no.3
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    • pp.351-361
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    • 2019
  • To investigate the temporal distribution of planktonic larvae of Tegillarca granosa and Anadara kagoshimensis in the Boseong coastal waters of South Korea, samples of planktonic bivalve larvae were taken from the coastal waters from June to September 2018 (this consisted of monthly sampling in June, July, and September with three- or four-day interval sampling in August). The samples were analyzed using metagenomic next-generation sequencing methods (target gene: mitochondria cytochrome c oxidase 1 region). In this study, a total of 21 bivalve operational taxonomic units (OTUs) were detected with the most abundant bivalve OTUs (relative mean abundance >1%) belonging to Magallana sikamea, Xenostrobus atratus, Musculista senhousia, Magallana gigas, Sinonovacula constricta, Anadara kagoshimensis, Kurtiella aff. bidentata, and Tegillarca granosa. In particular, Tegillarca granosa and Anadara kagoshimensis (the main fishery resources on the Boseong coast) accounted for 0.51-12.50% (average 4.00%) and 0.01-12.50% (1.92%), respectively. The planktonic bivalve larvae were most abundant from July to August. Anadara kagoshimensis was most abundant in early August but rare in the other investigated periods, whereas Tegillarca granosa was more abundant in late August. Bivalve larvae monitoring is important to predict the production of bivalve fisheries. Therefore, intensive monitoring is needed to understand the changes in planktonic bivalve larvae because potentially rapid turnover can respond to the ecological interaction of spawning bivalves.

A Study on Suitable Site Selection of Blood Clams (Tegillarca granosa) using Habitat Suitability Factors in Tidal Flat, Cheonsu and Garolim Bays (천수만, 가로림만 갯벌에서 서식지 적합인자를 이용한 꼬막 적지선정 연구)

  • Jeon, Seung Ryul;Heo, Seung;Cho, Yoon-Sik;Choi, Yong-Hyeon;Oh, Geu Rim
    • Journal of the Korean Society of Marine Environment & Safety
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    • v.24 no.6
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    • pp.764-772
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    • 2018
  • It is necessary to explore the possibility of alternative habitats and research the characteristics of basic habitats due to seeding, culturing and harvesting of blood clams (Tegillarca granosa) in tidal flats. Currently, dependence on naturally occurring spat is much higher than in other species, which may lead to a reduction in biological resources. In this study, we selected a total of 5 sites (Changgi, Hopo in Cheonsu Bay and Dangsan, Sachang, Wangsan in Garolim Bay) and examined habitat suitability factors for suitable site selection. Also, we considered the relationship of habitat suitability factors (Environment: water content, organic content; survival: mud content, mean size; growth: chlorophyll a). As a result, Wangsan had the highest score of the main habitat of blood clams (Habitat suitability score, Wangsan: 87; Dangsan: 86; Sachang: 81; Hopo: 78; and Changgi: 73). The sediment in Garolim Bay was fine-grained and the seasonal variation was lower than Cheonsu Bay. Therefore, it is considered that Garolim Bay is more suitable as a potential area and easy to utilize the space. In the future, search and selection of potential suitable sites could be considered to solve problems caused by the reduction of biological resources and the production for blood clams.

Subfamily Anadarinae (Bivalvia : Arcidae) of the Russian Far East Coast) (러시아 극동 연안의 꼬막 아과 (이매패 : Arcida))

  • Lutaenko, Konstantin A.
    • The Korean Journal of Malacology
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    • v.9 no.1
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    • pp.27-32
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    • 1993
  • 러시아의 극동 연안에서는 꼬막 아과 세 종이 출현하고 있다. 이들 중 Anadara inaequivalvis(Bruguiere, 1789)와 Anadara subcrenata(Lischke, 1869)는 신생대에 전멸된 개체군으로 알려져 있다. Anadara속의 형태학적 변이, 분류 및 지리적 분포에 대한 자료를 제시하였다.

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Purity Improvement of Calcium Lactate and Calcium Citrate Prepared with Shell of Anadarac tegillarca granosa (꼬막 패각으로 제조한 젖산칼슘과 구연산칼슘의 순도 향상에 대한 연구)

  • Kang mee-Sook;Soh Gowan-Soon;Shin Dong-Hwa
    • Journal of Food Hygiene and Safety
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    • v.20 no.3
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    • pp.128-133
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    • 2005
  • Ash of Anadarac tegillarca granosa shell was used for preparation of calcium lactate and calcium citrate, and improvement of their purity was carried out by using ammonium chloride process (ACP) and ammonium nitrate process (ACP). Purity of calcium lactate and calcium citrate made by the reaction of ash of Anadarac tegillarca granosa shell with lactic acid solution and with citric acid solution was 94.35-96.72 and $87.58-93.06\%$, respectively. However, purity of calcium lactate and calcium citrate prepared with purified calcium carbonate pre-purified from the ash of Anadarac fegiliarca granosa shell using ACP and ANP method was 99.53-100.34 and $99.32-99.88\%$, respectively. The purity of these calcium products were higher than those of calcium lactate and calcium citrate made with ash of Anadarac tegillarca granosa shell. Whiteness of calcium lactate and calcium citrate prepared with purified calcium carbonate pre-purified using ACP and ANP method was 94.8-98.5 and 99.4-101.5, respectively. Whiteness of these calcium products was higher than that of calcium lactate (91.8) and calcium citrate (92.9) made with the ash of Anadarac tegillarca granosa shell. Therefore, we estimated that calcium lactate and calcium citrate prepared with purified calcium carbonate using ACP and ANP method could be used potentially as a food additive for calcium supplement.

Development and Verification of and Single Nucleotide Polymorphism Markers toDetermine Country of Origin of Korean and Chinese Scapharca subcrenata (한국산과 중국산 새꼬막(Scapharca subcrenata)의 원산지 판별을 위한 SNP 마커의 개발 및 검증)

  • Seong Seok Choi;Seung Hyun Yoo;Yong Bae Seo;Jong Oh Kim;Ik Jung Kwon;So Hee Bae;Gun Do Kim
    • Journal of Life Science
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    • v.33 no.12
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    • pp.1025-1035
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    • 2023
  • In this study, we analyzed SNPs that appear between Korean and Chinese Scapharca subcrenata using the nucleotide sequence data of S. subcrenata analyzed by genotyping by sequencing (GBS). To distinguish the country of origin for S. subcrenata in Korean and Chinese, we developed a primer set as single nucleotide polymorphism (SNP) markers for quantitative real-time PCR (qPCR) analysis and validated by sequencing SNPs. A total of 180 samples of S. subcrenata were analyzed by genotyping by sequencing, and 15 candidate SNPs were selected. SNP marker selection for country of origin were identified through real-time qPCR. Insertion 1 and SNP 21 markers showed the most distinct separation between the sequence types as well as the country of origin through qPCR, with the observed amplification patterns matching the expected outcomes.. Additionally, in a blind test conducted by mixing samples of S. subcrenata at random, Insertion 1 showed 74% accuracy, 52% sensitivity, and 96% specificity, and SNP 21 showed 86% accuracy, 79% sensitivity, and 93% specificity. Therefore, the two SNP markers developed are expected to be useful in verifying the authenticity of the country of origin of S. subcrenata when used independently or in combination.

Studies on the Gonadal Development and Gametogenesis of the Granulated Ark, Tegillarca granosa (Linnee) (꼬막, Tegillarca granosa ( Linne ) 의 생식소발달 및 생식세포형성에 관한 연구)

  • 이주하
    • The Korean Journal of Malacology
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    • v.13 no.1
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    • pp.55-64
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    • 1997
  • 꼬막, Tegillarca granosa은 우리나라 남해 및 서해안 일대에서 서식하는 중요한 수산자원 중의 하나이지만, 이에 대한 생물학적 기초연구는 거의 없는 실정이다. 따라서 1995년 2월부터 1996년 1월까지 전남 벌교연안에서 채집한 꼬막의 생식소발달, 생식세포형성과정 및 생식주기를 조사하였다. 1. 꼬막은 자웅이체이면서 난생이고, 생식소는 내장낭의 간중장선을 싸고 있는 결합조직으로부터 족부의 근육층까지 분포한다.2. 미분화간층직과 호산성 과립세포들이 초기 활성기의 소낭에 풍부하게 나타나기 시작하여 완숙기에는 거의 없어지는 것으로 보아, 이들은 생식소 및 생식세포형성과 발달에 영향을 공급하는 영향세포로 생각된다.3. 생식소발달, 생식세포형성과정, 조직분화과정 및 세포학적 특성에 따라, 이들의 생식주기를 초기 활성기, 완숙기, 부분 방출기, 방출 및 비활성기 등으로 구분할 수 있다. 4. 방란 및 방정은 수온 2$0^{\circ}C$정도되는 6월하순부터 시작되고, 주산란시기는 수온이 23-24$^{\circ}C$정도 되는 7-8월이며, 완숙란의 크기는 50-60$\mu\textrm{m}$이다.5. 비활성기는 9월에서 이듬해 4월까지 지속되는 비교적 긴 기간이며, 초기 활성기도 비교적 길어 1월에서 5월까지 지속되는 반면, 후기활성, 완숙 및 방출기는 비교적 짧아, 5월에서 8월까지 모두 완료된다.6. 비만도의 월별 변화는 생식소의 발달, 생식주기 및 수온과 밀접한 관계가 있다.7. 사용된 재료 433개체 중 1개체가 자웅동체현상을 나타내었다.

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Shell Height Frequency using of Age and Growth of Blood Cockle, Tegillarca granosa (Linnaeus) in Yeoja Bay, Southern Coast of Korea (각고조성을 이용한 남해안 여자만 꼬막의 연령과 성장)

  • Chang, Dae-Soo;Moon, Tae-Seok;Jung, Min-Min
    • The Korean Journal of Malacology
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    • v.22 no.2
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    • pp.135-141
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    • 2006
  • This paper describes relative age and growth pattern of the blood cockle, Tegillarca granosa (Linnaeus) in Yeoja Bay, southern coast of Korea. The young shell of blood cockle that spawned from July to August reached 5.60 mm $({\pm}\;1.07)$ in shell height in October. Slow growing season was estimated to be from October to the next May with water temperature under $23^{\circ}C$. With warm water temperature in July to September, the growth was fast. The young shells reached 29 percentage of asymptotic shell height 11-15 months after spawning. Growth was estimated by von Bertalanffy growth function as follows. $I_t(sh_t)=46.1317\;(1-e^{-0.4997(t-0.5828)})$.

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