• Korean Journal of Fisheries and Aquatic Sciences
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• v.40 no.3
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• pp.128-132
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• 2007

We identified a microsatellite marker, Poli121TUF, which appears to be significantly linked (P<0.001) with a lymphocystis disease virus (LCDV)-resistance gene in the olive flounder, Paralichthys olivaceus. The olive flounder is an economically important food fish, that is widely cultured in Korea, Japan, and China. Lymphocystis disease has spread in these countries and has seriously reduced the economic value of the fish. LCDV causes lymphocystis cells (LC) to form on the body surface, fins, gills, mouth, and intestine. Fish with LC lose commercial value due to their deformed appearance. The identified micro satellite marker can be used as a candidate locus for marker-assisted selection (MAS) in order to enhance the efficiency of selection for LCDV resistance in the olive flounder.

• ALGAE
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• v.29 no.2
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• pp.127-136
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• 2014

Endophytic green algae growing in fronds of Grateloupia spp. were examined for infection frequency from their field populations of Jeju, Wando, and Uljin, Korea in August and September 2013. Three endophytes were isolated in laboratory culture from a G. lanceolata thallus collected in Jeju. Unialgal cultures were made from the endophytes, and their morphological characteristics were observed with light microscopy. In addition, a phylogenetic analysis based on chloroplast-encoded elongation factor tufA gene sequences was performed to identify the G. lanceolata endophytes. Three filamentous green endophytic species, Ulvella leptochaete, Blastophysa rhizopus, and Bolbocoleon piliferum were reported for the first time in Korea. General biological information for the three endophytes was also described.

• Korean Journal of Environmental Biology
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• v.40 no.4
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• pp.464-476
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• 2022

In recent years, macroalgal bloom occurs frequently in coastal oceans worldwide. It might be attributed to accelerating climate change. "Green tide" events caused by proliferation of green macroalgae (Ulva spp.) not only damage the local economy, but also harm coastal environments. These nuisance events have become common across several coastal regions of continents. In Korea, green tide incidences are readily seen throughout the year along the coastlines of Jeju Island, particularly the northeastern coast, since the 2000s. Ulva species are notorious to be difficult for morphology-based species identification due to their high degrees of phenotypic plasticity. In this study, to investigate temporal variation in Ulva community structure on Jeju Island between 2015 and 2020, chloroplast barcode tufA gene was sequenced and phylogenetically analyzed for 152 specimens from 24 sites. We found that Ulva ohnoi and Ulva pertusa known to be originated from subtropical regions were the most predominant all year round, suggesting that these two species contributed the most to local green tides in this region. While U. pertusa was relatively stable in frequency during 2015 to 2020, U. ohnoi increased 16% in frequency in 2020 (36.84%), which might be associated with rising sea surface temperature from which U. ohnoi could benefit. Two species (Ulva flexuosa, Ulva procera) of origins of Europe should be continuously monitored. The findings of this study provide valuable information and molecular genetic data of genus Ulva occurring in southern coasts of Korea, which will help mitigate negative influences of green tide events on Korea coast.

• Genomics & Informatics
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• v.11 no.4
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• pp.272-276
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• 2013

Sequence analysis of the 16S rRNA gene has been widely used for the classification of microorganisms. However, we have been unable to clearly identify five Flavobacterium species isolated from a freshwater by using the gene as a single marker, because the evolutionary history is incomplete and the pace of DNA substitutions is relatively rapid in the bacteria. In this study, we tried to classify Flavobacterium species through multilocus sequence analysis (MLSA), which is a practical and reliable technique for the identification or classification of bacteria. The five Flavobacterium species isolated from freshwater and 37 other strains were classified based on six housekeeping genes: gyrB, dnaK, tuf, murG, atpA, and glyA. The genes were amplified by PCR and subjected to DNA sequencing. Based on the combined DNA sequence (4,412 bp) of the six housekeeping genes, we analyzed the phylogenetic relationship among the Flavobacterium species. The results indicated that MLSA, based on the six housekeeping genes, is a trustworthy method for the identification of closely related Flavobacterium species.

• Journal of Microbiology and Biotechnology
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• v.21 no.4
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• pp.421-429
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• 2011

For precise identification of a Lactobacillus K1 isolate, LC-MS/MS analysis of the putative surface layer protein was performed. The results obtained from LTQ-FT-ICR mass spectrometry confirmed that the analyzed protein spot is the surface layer protein originating from Lb. helveticus species. Moreover, the identified protein has the highest similarity with the surface layer protein from Lb. helveticus R0052. To evaluate the proteomic study, multilocus sequence analysis of selected housekeeping gene sequences was performed. Combination of 16S rRNA sequencing with partial sequences for the genes encoding the RNA polymerase alpha subunit (rpoA), phenylalanyl-tRNA synthase alpha subunit (pheS), translational elongation factor Tu (tuf), and Hsp60 chaperonins (groEL) also allowed to classify the analyzed isolate as Lb. helveticus. Further classification at the strain level was achieved by sequencing of the slp gene. This gene showed 99.8% identity with the corresponding slp gene of Lb. helveticus R0052, which is in good agreement with data obtained by nano-HPLC coupled to an LTQ-FT-ICR mass spectrometer. Finally, LC-MS/MS analysis of surface layer proteins extracted from three other Lactobacillus strains proved that the proposed method is the appropriate molecular tool for the identification of S-layer-possessing lactobacilli at the species and even strain levels.

• Journal of Microbiology and Biotechnology
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• v.22 no.4
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• pp.516-525
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• 2012

LAB were isolated from makgeolli locally produced around Jinju, Gyeongnam, S. Korea during spring of 2011. Randomly selected 11 isolates from MRS agar plates were identified first by API CHL 50 kits and then 16S rRNA gene sequencing. All 11 isolates were identified as Lactobacillus plantarum. Among them, ST4 grew in MRS broth with ethanol up to 10%, showing the highest alcohol resistance. L. plantarum ST4 was moderately resistant against acid and bile salts. When cellular proteins of L. plantarum ST4 under ethanol stress were analyzed by two-dimensional gel electrophoresis (2DE), the intensities of 6 spots increased, whereas 22 spots decreased at least 2-fold. Those 28 spots were identified by peptide mass fingerprinting (PMF). FusA2 (elongation factor G) increased 18.8-fold (6% ethanol) compared with control. Other proteins were AtpD (ATP synthase subunit beta), DnaK, GroEL, Tuf (elongation factor Tu), and Npr2 (NADH peroxidase), respectively. Among the 22 proteins decreased in intensities, lactate dehydrogenases (LdhD and LdhL1) were included.

• Journal of the Korean association of regional geographers
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• v.18 no.3
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• pp.336-350
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• 2012

Cette $\acute{e}$tude a pour objectif d'analyser et d'expliquer le g$\acute{e}$osite de l'$\hat{I}$le de Geum-o pour connaitre les caract$\acute{e}$ristiques de cette r$\acute{e}$gion du point de vue $\acute{e}$cologique, historique et culturel $\grave{a}$ partir de ses ressources g$\acute{e}$omorphiques et g$\acute{e}$ologiques. Il y a plusieurs ressources g$\acute{e}$otouristiques sur $\hat{I}$le de Geum - o: la falaise de 'Miyeokneolbang' et 'Shinseondae'; la plage de Gigpo; la falaise et la caverne marine de 'Gualbaramtong'; le tombolo et l'$\hat{I}$le reli$\acute{e}$e $\grave{a}$ la terre de Choungsan; la coul$\acute{e}$e de roches de Jangji; la plage de cailloux de Jangji; le lieu des tuf et des andesite de la c$\hat{o}$te orientale. On a g$\acute{e}$n$\acute{e}$ralement d$\acute{e}$velopp$\acute{e}$ la couche s$\acute{e}$dimentaire et les roches volcaniques li$\acute{e}$es $\grave{a}$ la derni$\grave{e}$re p$\acute{e}$riode du m$\acute{e}$sozo$\ddot{i}$que. Une route g$\acute{e}$otouristique part de l'embarcad$\grave{e}$re de Hamgoumi sur l'$\hat{I}$le de Geum-o et continue du Nord-Ouest jusqu'au Sud-Est l'autre route part de la c$\hat{o}$te Est et continue en suivant la c$\hat{o}$te orientale. Nous proposons des panneaux d'explication g$\acute{e}$otouristique de Janji centr$\acute{e}$s sur la coul$\acute{e}$e de roches.

• Proceedings of the Korean Aquaculture Society Conference
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• 2003.10a
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• pp.100-100
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• 2003

양식 산업에 있어 사육 생물의 빠른 성장은 가장 요구되는 특성이다. 특히, 선발육종을 통한 성장 개선은 사료의 효율적 이용과 연관되어 있으며, 균형 잡힌 단백질 대사 등을 통해 이루어진다. 대부분의 경골어류는 단백질 대사의 마지막 부산물로 암모니아를 생성하여 배설하며, 이를 통한 사료 내 단백질의 효율적 이용성을 비교하는 척도로 제시되어 왔다(Ming, 1985). 따라서 본 실험에서는 한국해양연구원에서 선발육종 해 온 참돔과 일본 양식산 참돔 및 이들의 교배 자손들을 대상으로 일간 먹이 공급, 절식 그리고 1회 만복 공급에 따른 암모니아성 질소 배설률을 조사하였으며, 일간 먹이 공급에 따른 각 교배 자손들의 분 배출 특성을 알아보았다. 실험어는 일본 양식산인 JPN 교배구 자손과 한국해양연구원 선발육종산인 KORDI F4 교배구 자손, 그리고 JPN$\times$KORDI F4♂ 교배구 자손을 대상으로 실시하였다. 체중이 각각 17.1$\pm$0.1 g (JPN 교배구; 그룹 1), 17.7$\pm$0.1 g (JPN♀$\times$KORDI F4♂; 그룹 2), 21.5$\pm$0.1 g (KORDI F4; 그룹 3)인 참돔 치어를 각각 15마리씩 3반복 수용하여 실험에 이용하였다. 실험어는 지름이 33 cm이고 높이가 34 cm인 둥근 투명 플라스틱 수조에 수용하고 분 수집기인 TUF column (passing effluent water through a special test tube) system을 이용 어체중의 3%에 해당하는 사료 량을 일간 세 번에 나누어 동일량을, 09시부터 17시까지 4시간 간격으로 공급한 14일째에 일간 먹이 공급에 따른 24시간 동안의 참돔 종간 잡종 치어의 총암모니아성 질소(total ammonia nitrogen, TAN) 배설률 및 분 배출률을 조사하였다. 이 조사가 끝난 후 3일간 절식시킨 다음 내인성 암모니아성 질소 배설을 조사하였으며, 이어서 1회 만복 사료 공급한 다음 이에 따른 암모니아성 질소 배설 경향을 알아보았다. 일간 먹이 공급에 따른 각 실험구의 암모니아 배설은 세 가지 계통 참돔치어 모두 먹이 섭취 후 암모니아 배설로 인한 TAN 농도가 지속적으로 증가하는 경향을 보였으며, 시간당 TAN 배설률을 적분한 결과, 그룹 1과 2 그리고 3의 일간 TAN 배설률은 각각 637.3$\pm$36.5 mg/kg fish/day, 684.3$\pm$18.5 mg/kg fish/day 그리고 772.8$\pm$17.3 mg/kg fish/day로 나타나 그룹 3의 일간 TAN 배설률이 가장 높은 결과를 보였다. 3일간 절식 후 그룹 1, 2, 그리고 2의 TAN 배설률은 각각 8.08~14.15 mg/kg fish/hr, 6.50~12.20 mg/kg fish/hr, 그리고 6.67~8.60 mg/kg fish/hr의 범위를 보여 거의 일정한 농도로 나타났다. 시간당 TAN 배설률을 적분한 결과, 그룹 1, 2 그리고 3의 일간 TAN 배설률은 각각 286.9$\pm$28.3 mg/kg fish/day, 215.7$\pm$5.5 mg/kg fish/day 그리고 179.3$\pm$7,7 mg/kg fish/day로 나타나 먹이 공급과는 달리 내인성 TAN 배설의 경우 그룹 1의 배설률이 가장 높은 결과를 보였다. 1회 만복 먹이 공급에 따른 TAN 배설 경향은 그룹 1과 2의 TAN 배설률은 먹이 공급 6시간 후 가장 높은 값인 44.19$\pm$2.90 mg/kg fish/hr와 41.70$\pm$1.40 mg/kg fish/hr을 보였고, 그룹 3에서는 4시간 후에 가장 높은 값인 31.23$\pm$1.39 mg/kg fish/day로 나타났다. 일간 먹이 공급에 따른 각 실험구의 총 분 배출량은 그룹 1의 경우 총 분 배출량은 2.17$\pm$0.1 g/kg fish와 91.15$\pm$4.53 g/kg feed로 나타났고, 그룹 2에서는 2.26$\pm$0.14 g/kg fish와 95.02$\pm$3.18 g/kg feed, 그룹 3에서는 2.81$\pm$0.73 g/kg fish와 132.85$\pm$34.0 g/kg feed로 나타나 유의적인 차이는 보이지 않았으나(P>0.05), 그룹 3의 배출 비율이 높은 것으로 나타났다. 시간 경과에 따른 분 배출 비율은 그룹 1의 경우 먹이 공급 24시간 후 총 분의 60.6%를 보여 반면, 그룹 2와 3에서는 각각 67.8%와 77.8%를 보여 그룹 1이 다른 그룹에 비해 분 배출 비율이 낮은 것으로 나타났다.