• Korean Journal of Medicinal Crop Science
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• v.23 no.6
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• pp.439-445
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• 2015

Background : Correct identification of Panax species is important to ensure food quality, safety, authenticity and health for consumers. This paper describes a high resolution melting (HRM) analysis based method using internal transcribed spacer (ITS) and 5.8S ribosomal DNA barcoding regions as target (Bar-HRM) to obtain barcoding information for the major Panax species and to identify the origin of ginseng plant. Methods and Results : A PCR-based approach, Bar-HRM was developed to discriminate among Panax species. In this study, the ITS1, ITS2, and 5.8S rDNA genes were targeted for testing, since these have been identified as suitable genes for use in the identification of Panax species. The HRM analysis generated cluster patterns that were specific and sensitive enough to detect small sequence differences among the tested Panax species. Conclusion : The results of this study show that the HRM curve analysis of the ITS regions and 5.8S rDNA sequences is a simple, quick, and reproducible method. It can simultaneously identify three Panax species and screen for variants. Thus, ITS1HRM and 5.8SHRM primer sets can be used to distinguish among Panax species.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.44 no.5
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• pp.499-505
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• 2011

The fishing grounds of Korean large-pair trawlers have shifted since exclusive economic zones (EEZs) were established in a fisheries agreement involving countries neighboring Korean waters. The distributions of marine ecosystems and fisheries resources have been changing with environmental changes such as global warming and with the shift in species targeted as a result of changes in fishing technology and fishing gear. This study analyzed variation in the species assemblages caught in Korean waters by large-pair trawlers as a result of these geopolitical and environmental changes. The data used in this study were obtained from the Fishery Production Statistics of Korea and the Port Sample Survey of the National Fisheries Research and Development Institute (NFRDI) from 1990 to 2007. Hierarchical clustering analysis (HCA) and correspondence analysis (CA) were used to explore the characteristics of the catch-species composition. The overall variation in the species composition of the catch of Korean large-pair trawlers showed that the proportions of croaker Johnius grypotus, small yellow croaker Larimichthys polyactis, eel Anguilla japonica, and blue crab Portunus trituberculatus decreased, whereas those of hairtail Trichiurus lepturus, Spanish mackerel Scomberomorus niphonius, anchovy Engraulis japonicus, and common squid Todarodes pacificus increased in Korean waters over the 18-year period. The results of the HCA of the annual catch data by species showed four different distributions of fish species according to year. Results of the CA showed that the species assemblages differed between the 1990s and 2000s.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.55 no.5
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• pp.742-750
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• 2022

This study aimed to monitor the distribution of Cobitidae in Korea by the identification of species using genetic analysis. Based on the genetic analysis, Cobitidae species in four of five domestic fish farms consisted of only Chinese muddy loach Misgurnus mizolepis, but muddy loach Misgurnus anguillicaudatus was also present it in one fish farm. In the case of imported Cobitidae species, in addition to Chinese muddy loach and muddy loach, the harmful species Paramisgurnus dabryanus, was also present. Chinese muddy loach accounted for 20%, 67%, and 60% of the S6, S7, and S8 samples, respectively. An analysis of the total length, body length, and weight showed that domestic Chinese muddy loach showed higher values than imported muddy loach, and imported Chinese muddy loach showed similar values to P. dabryanus. There were no significant differences in the country of origin of the three species. Thus, the mitochondrial cytochrome c oxidase subunit I gene sequence was analyzed and compared the verification of species identification. The three species of Cobitidae were genetically divided into three groups and determined to have genetic differences. These results indicate that it is necessary to reduce the heterogeneous mixing rate through discriminating species by genetic analysis.

• The Plant Pathology Journal
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• v.21 no.3
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• pp.229-236
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• 2005

Molecular profIles of PCR-RFLP and sequence analysis of internal transcribed spacer (ITS) regions of rDNA were compared between morphologically distinguishable species of Trichoderma isolated from substrates of oyster mushroom in Korea, T. atroviride, T. citrinoviride, T. harzianum, T. longibrachiatum, T. virens, and two unidentified species, Trichoderma sp. 1 and 2. PCR­RFLP analysis divided the Trichoderma spp. into six RFLP groups, A, B, C, D, E, and F. The RFLP groups were generally agreed with described morphological species, except that the RFLP group A containing the two unidentified species. A neighbor-joining tree based on ITS sequences well supported RFLP groups observed by RFLP analysis of ITS regions of rDNA. Additionally, the two unidentified species, Trichoderma sp. 1 and 2, which could not be distinguished by PCR­RFLP analysis, were separated in sequence analysis of ITS regions of rDNA.

• 한국연소학회:학술대회논문집
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• 2014.11a
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• pp.5-7
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• 2014

A skeletal mechanism of coal combustion was derived from a detailed coal combustion kinetic mechanism through an importance analysis of chemical pathways. The reduction process consists of roughly two parts. The first process is performed based on a connectivity analysis between species. In this process, DRGEPSA is chosen for reduction process. Strongly connected species and related reactions from the important species set as start species by the operator are sorted into the reduced mechanism. About 70% of species and reactions can be removed with a limited accuracy loss. Subsequently the second reduction process, CSP, is performed. This method focuses on an importance of each reaction and can reduce a volume of mechanism appropriately. Through these analyses, a skeletal mechanism is generated that is including 65 species and 150 reactions. The generated skeletal mechanism is verified through a comparison with the detailed mechanism in the homogeneous reactor model of CHEMKIN-PRO under wide range of conditions. The generated mechanism can give an advantage in the analysis of coal combustion characteristics in detail in large scale simulations such as LES and DNS.

• Journal of Microbiology and Biotechnology
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• v.15 no.2
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• pp.388-394
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• 2005

In order to investigate the distribution of dominant Bifidobacterium species in intestinal microflora of Korean adults and seniors, SDS-PAGE profiles of whole cell proteins were used for the identification of bifidobacteria. To confirm the reliability of SDS-PAGE, the Bifidobacterium species identified by SDS-PAGE of whole cell proteins were validated by using 16S rDNA sequencing analysis. The results of SDS­PAGE corresponded well with those determined by the analysis of 16S rDNA sequencing. Based on the analysis of SDS-PAGE patterns on unidentified fecal strains which showed positive in fructose-6-phosphate phosphoketolase activity, B. adolescentis, B. longum, and B. bifidum were identified in the feces of adults, and B. adolescentis, B. longum, B. bifidum, B. breve, and B. dentium were identified in those of seniors. In most of the fecal samples tested, the predominant Bifidobacterium species consisted of only a few species, and differences in the distribution and numbers of Bifidobacterium species were observed between adults and seniors. B. adolescentis and B. longum were found to be the most common species in feces of adults, but not in seniors. Accordingly, the distribution and abundance of bifidobacteria in the human intestinal microflora varied depending on the age of hosts.

• Journal of environmental and Sanitary engineering
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• v.21 no.2 s.60
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• pp.20-29
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• 2006

Analysis of benthic macroinvertebrate community and biological estimation of water quality by the benthic macroinvertebrates were conducted at Olympic Park at its nearby waters in Seoul from December, 2004 to September, 2005. The benthic macrovertebrates were 49 species. Among them, 39 species of aquatic insects were included 11 species in odonata, 9 species in diptera, 7 species in hemiptera, 6 species in coleoptera, 3 species in ephemeroptera, 2 species in trichoptera and 1 species in lepipdoptera, and 10 species of non-insects were 6 species in mollusca, 2 species in hirudinea and 2 species in oligochaeta. Species number of lakes, Seongnae Stream within and outside the Olympic Park was 25 species, 35 species and 33 species, respectively. Individual number of lakes, Seongnae Stream within and outside the Olympic Park was $131\;inds/2.5m^2\;239\;inds/2.5m^2\;556\;inds/2.5m^2$, respectively. Mean dominance indices of lakes, Seongnae Stream within and outside the Olympic Park was 0.74, 0.61 and 0.72, respectively. According to the saprobic system based on the ESB index(Ecological score of benthic macroinvertebrate community), all survey sites are $\beta-mesosaprobic$ waters. To increase of abundance of benthic macroinvertebrates, regular interval monitoring has to be enforced and standard of water quality for the ecological ponds of Olympic Park has to be prepared.

• Development and Reproduction
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• v.18 no.1
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• pp.43-49
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• 2014

Three species of Nortamea concinua (NC) and Haliotis discus hannai (HDH) from Tongyeong and Sulculus diversicolor supertexta (SDS) are widely distributed on the coast of the Yellow Sea, southern sea and Jeju Island in the Korean Peninsula under the innate ecosystem. There is a need to understand the genetic traits and composition of three mollusk species in order to evaluate exactly the patent genetic effect. PCR analysis was performed on DNA samples extracted from a total of 21 individuals using seven decamer oligonucleotides primers. Seven primers were shown to generate the unique shared loci to each species and shared loci by the three species which could be clearly scored. A hierarchical clustering tree was constructed using similarity matrices to generate a dendrogram, which was facilitated by the Systat version 10. 236 specific loci, with an average of 56.3 per primer, were identified in the NC species. 142 specific loci, with an average of 44.7 per primer, were identified in the HDH species. Especially, 126 numbers of shared loci by the three species, with an average of 18 per primer, were observed among the three species. Especially, the decamer primer BION-75 generated 7 unique loci to each species, which were identifying each species, in 700 bp NC species. Interestingly, the primer BION-50detected 42 shared loci by the three species, major and/or minor fragments of sizes 100 bp and 150 bp, respectively, which were identical in all samples. As regards average bandsharing value (BS) results, individuals from HDH species (0.772) exhibited higher bandsharing values than did individuals from NC species (0.655). In this study, the dendrogram obtained by the seven decamer primers indicates three genetic clusters: cluster 1 (CONCINNA 01~CONCINNA 07), cluster 2 (HANNAI 08~HANNAI 14), cluster 3 (SUPERTEXTA 15~SUPERTEXTA 21). Comparatively, individuals of HDH species were fairly closely related to that of SDS species, as shown in the hierarchical dendrogram of genetic distances.

• Journal of Forest and Environmental Science
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• v.31 no.3
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• pp.149-163
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• 2015

The aim of the present study was to assess the variation in species composition and diversity of woody species at different altitudes (900 to 2600 m asl) in Kedarnath Wildlife Sanctuary (KWLS) and its adjoining areas in Garhwal Himalaya, India. A total of 94 woody plant species (including 44 tree and 50 shrub species) belonging to 72 genera and 44 families were reported. Density varied from $235{\pm}9$ to $505{\pm}21trees\;ha^{-1}$ and $4,730{\pm}474$ to $9,530{\pm}700shrubs\;ha^{-1}$. Total basal cover varied from $10.49{\pm}0.66$ to $42.92{\pm}2.57m^2ha^{-1}$ (trees) and $0.36{\pm}0.024$ to $0.62{\pm}0.047m^2ha^{-1}$ (shrubs). Shannon-Wiener Index fluctuated between 2.30 to 3.53 (trees) and 2.74 to 3.78 (shrubs). Analysis of variance (ANOVA) indicated that altitude and aspect had significant effect on the distribution of woody species. Taxonomically, Rosaceae with 15 species emerged as the dominant family. Low value of maturity index and contiguous distribution of species denoted the early successional status of the studied forests. The conservation assessment based on altitudinal regimes and the information on species structure and function can provide baseline information for monitoring and sustaining the biodiversity.

• Journal of the Korean Institute of Landscape Architecture
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• v.22 no.1
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• pp.85-100
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• 1994

This study was to analyze the relationship between the community or species and environmental variables of the vegetation landscape in Naejangsan National Park. The analysis was performed by the ordination of DCA and CCA. The study was to compare and analyze the species composition status by the layer and the growth characterisics of the following vegetations ; Torreya nucifera community, Quercus variabilis - Acer palmatum community, Q. variabilis community, Q. variabilis - Sasa purpurascens community and Daphniphyllam macropodum community. The results are as follows; 1. The result of the study on the relationshkp between the stand scores of DCA ordination and environmental variables showed that the soil pH, the ammount of AV-P2O5 and the ammount of C.E.C. tend to increase while Pinus densiflora community changes to Q. variabilis - Q. serrata community and finally Carpinus laxiflora species community siginigicantly. The relation between the stand scores of CCA ordination and several enviromental variables suggested that the species of C. laxiflora and C. tschonoskii the species of Q. cariabilis and Q. serrata the species of C. pisifera, P. densiflora and Q. aliana in sequence grows in more fertile soil. 2. As the result of the analysis of the T. nucifera community showed, reproduction did not increase, and the characteristic of growth was not affected. The result is shown in the growth curve that was damaged by the climate and the human interference. 3. The A. palmatum was found to be as minor species in the middle layer and the crown areas did not have sufficient crown. 4. The result of the analysis of the relationship between Q. variabilis community and Q. variabilis - S. purpurascens community showed a decreasing tendency in the growth and number of species. 5. D. macropodum which constituted the dominance species in the middle layer had a nomal growth curve, and then the successional trend of D. macropodum species seems to be located in the climax species.