• Journal of the Korean Society of Marine Environment & Safety
• /
• v.22 no.5
• /
• pp.483-489
• /
• 2016

The type approval test for USCG Phase II must be satisfied such that living natural biota occupy more than 75 % of whole biota in a test tank. Thus, we harvested a community of natural organisms using a net at Masan Bay (eutrophic) and Jangmok Bay (mesotrophic) during winter season to meet this guideline. Furthermore, cell viability was measured to determine the mortality rate. Based on the organism concentration volume (1 ton) at Masan and Jangmok Bay, abundance of ${\geq}10$ and $<50{\mu}m$ sized organisms was observed to be $4.7{\times}10^4cells\;mL^{-1}$and $0.8{\times}10^4cells\;mL^{-1}$, and their survival rates were 90.4 % and 88.0 %, respectively. In particular, chain-forming small diatoms such as Skeletonema costatum-like species were abundant at Jangmok Bay, while small flagellate ($<10{\mu}m$) and non chain-forming large dinoflagellates, such as Akashiwo sanguinea and Heterocapsa triquetra, were abundant at Masan Bay. Due to the size-difference of the dominant species, concentration efficiency was higher at Jangmok Bay than at Masan Bay. The mortality rate in samples treated by Ballast Water Treatment System (BWMS) (Day 0) was a little lower for samples from Jangmok Bay than from Masan Bay, with values of 90.4% and 93%, respectively. After 5 days, the mortality rates in control and treatment group were found to be 6.7% and >99%, respectively. Consequently, the phytoplankton concentration method alone did not easily satisfy the type approval standards of USCG Phase II ($>1.0{\times}10^3cells\;mL^{-1}$ in 500-ton tank) during winter season, and alternative options such as mass culture and/or harvesting system using natural phytoplankton communities may be helpful in meeting USCG Phase II biological criteria.

• Korean Journal of Ichthyology
• /
• v.17 no.1
• /
• pp.8-18
• /
• 2005

A total of 33 fish species were collected by a small beam trawl from an eelgrass bed in Myoungjuri of Jindong Bay, Korea. The dominant fish species were Hexagrammos otakii, Pholis fangi, Repomucenus valenciennei, Pseudoblennus cottoides, Pholis nebulosa, Rudarius ercodes, Syngnathus schlegeli, and Sebastes schlegeli. These 8 fish species accounted for 79.5% of the total number of individuals collected. The fishes collected in the study area were primarily small fish species or juveniles of large fish species. Seasonal variations in both species composition and abundance were large; higher numbers of fish occurred from April to June 2002, while biomass was the highest in September 2001 and 2002. Seasonal changes in fish abundance corresponded with eelgrass biomass and abundance of food organisms.

• Korean Journal of Ichthyology
• /
• v.24 no.3
• /
• pp.191-200
• /
• 2012

Fish species composition in eelgrass bed of Punghwa-ri in Tongyeong, Korea was determined using monthly samples collected by a surf net from November 2010 to October 2011. During the study period, a total of 30 species, 5,511 individuals and 6,933.4 g of fishes were collected. The dominant fish species were Pholis nebulosa, Syngnathus schlegeli, Rudarius ercodes, Pseudoblennius cottoides, Sebastes inermis, and Aulichthys japonicus which accounted for 93.4% of total number of individuals collected. Most fishes collected in the eelgrass bed belong mainly to small fish species or juveniles of large fish species. Eelgrass shoot density reached a peak in April 2011, and then decreased to a minimum in January 2011. The seasonal variation of fish assemblage in an eelgrass bed of Punghwa-ri was correlated to the variations in the water temperature, eelgrass density and biomass, and abundances of major prey organisms.

• Proceedings of the Korean Society of Plant Pathology Conference
• /
• 2003.10a
• /
• pp.81.2-82
• /
• 2003

Plants have evolved along with pathogens, and they have developed sophisticated defense systems against specific microorganisms to survive. G-protons are considered one of the upstream signaling components working as a key for the defense signal transduction pathway. For activation and inactivation of G-protein, GTP-biding proteins are involved. GTP -binding proteins are found in all organisms. Small GTP-binding proteins, having masses of 21 to 30kD, belong to a superfamily, often named the Ras supefamily because the founding members are encoded by human Ras genes initially discovered as cellular homologs of the viral ras oncogene. Members of this supefamily share several common structural features, including several guanine nucleotide binding domains and an effector binding domain. However, exhibiting a remarkable diversity in both structure and function. They are important molecular switches that cycle between the GDP-bound inactive form into the GTP-bound active form through GDP/GTP replacement. In addition, most GTP-binding proteins cycle between membrane-bound and cytosolic forms. such as the RAC family are cytosolic signal transduction proteins that often are involved in processing of extracellular stimuli. Plant RAC proteins are implicated in regulation of plant cell architecture secondary wall formation, meristem signaling, and defense against pathogens. But their molecular mechanisms and functions are not well known. We isolated a RacB homolog from rice to study its role of defense against pathogens. We introduced the constitutively active and the dominant negative forms of the GTP-hinging protein OsRacB into the wild type rice. The dominant negative foms are using two forms (full-sequence and specific RNA interference with RacB). Employing southern, and protein analysis, we examine to different things between the wild type and the transformed plant. And analyzing biolistic bombardment of onion epidermal cell with GFP-RacB fusion protein revealed association with the nucle.

• Journal of Microbiology and Biotechnology
• /
• v.16 no.5
• /
• pp.651-660
• /
• 2006

Natural products are a rich source of biologically active small molecules and a fertile area for lead discovery of new drugs [10, 52]. For instance, 5% of the 1,031 new chemical entities approved as drugs by the US Food and Drug Administration (FDA) were natural products between 1981 and 2002, and another 23% were natural product-derived molecules [53]. These molecules have evolved through millions of years of natural selection to interact with biomolecules in the cells or organisms and offer unrivaled chemical and structural diversity [14, 37]. Nonetheless, a large percentage of nature remains unexplored, in particular, in the marine and microbial environments. Therefore, natural products are still major valuable sources of innovative therapeutic agents for human diseases. However, even when a natural product is found to exhibit biological activity, the cellular target and mode of action of the compound are mostly mysterious. This is also true of many natural products that are currently under clinical trials or have already been approved as clinical drugs [11]. The lack of information on a definitive cellular target for a biologically active natural product prevents the rational design and development of more potent therapeutics. Therefore, there is a great need for new techniques to expedite the rapid identification and validation of cellular targets for biologically active natural products. Chemical genomics is a new integrated research engine toward functional studies of genome and drug discovery [40, 69]. The identification and validation of cellular receptors of biologically active small molecules is one of the key goals of the discipline. This eventually facilitates subsequent rational drug design, and provides valuable information on the receptors in cellular processes. Indeed, several biologically crucial proteins have already been identified as targets for natural products using chemical genomics approach (Table 1). Herein, the representative case studies of chemical genomics using natural products derived from microbes, marine sources, and plants will be introduced.

• Korean Journal of Ichthyology
• /
• v.19 no.1
• /
• pp.44-50
• /
• 2007

The feeding habits of sandfish, Arctoscopus japonicus were studied by examining the stomach contents of 2,115 specimens collected between April 2003 and March 2004 in the East Sea of Korea. The standard length (SL) of the specimens ranged from 9.8 to 22.9 cm. The main prey items of A. japonicus were amphipods, mysids, cephalopods and fishes. They showed ontogenetic changes in feeding habits. Individuals of small size (9~16 cm, SL) fed mainly on small prey organisms such as mysids and amphipods. However, more cephalopods and fishes were consumed with increasing fish size (16~23 cm, SL).

• Asian-Australasian Journal of Animal Sciences
• /
• v.28 no.4
• /
• pp.485-493
• /
• 2015

This study evaluated the in situ ruminal degradability, and subsequent small intestinal digestibility (SID) of dry matter, crude protein (CP), and amino acids (AA) of cottonseed meal (CSM), sunflower seed meal (SFSM) and distillers dried grains with solubles (DDGS) by using the modified three-step in vitro procedure. The ruminal degradability and subsequent SID of AA in rumen-undegradable protein (RUP-AA) varied among three protein supplements. The result show that the effective degradability of DM for SFSM, CSM, and DDGS was 60.8%, 56.4%, and 41.0% and their ruminal fermentable organic matter was 60.0%, 55.9%, and 39.9%, respectively. The ruminal degradable protein (RDP) content in CP for SFSM, CSM, and DDGS was 68.3%, 39.0%, and 32.9%, respectively, at the ruminal solid passage rate of 1.84%/h. The SFSM is a good source of RDP for rumen micro-organisms; however, the SID of RUP of SFSM was lower. The DDGS and CSM are good sources of RUP for lambs to digest in the small intestine to complement ruminal microbial AA of growing lambs. Individual RUP-AA from each protein source was selectively removed by the rumen microorganisms, especially for Trp, Arg, His, and Lys (p<0.01). The SID of individual RUP-AA was different within specific RUP origin (p<0.01). Limiting amino acid was Leu for RUP of CSM and Lys for both RUP of SFSM and DDGS, respectively. Therefore, different protein supplements with specific limitations should be selected and combined carefully in growing lambs ration to optimize AA balance.

• Korean Journal of Microbiology
• /
• v.37 no.2
• /
• pp.137-144
• /
• 2001

In order to investigate the diversity of bacterial community in the mud flat of Sunchon Bay, Chunnam province, diversity of amplified 16S rDNA was examined. Total DNA was extracted from sediment soils and 16S rDNAs were amplified using PCR primers based on the universally conserved sequences in bacteria. Clonal libraries were constructed and 111 clones were examined by amplified rDNA restriction analysis (ARDRA) using HaeIII. Clones were clustered based on restriction patterns using computer program, GelCompar II. One hundred different RFLP types were detected from 111 clones. The 20 clones were selected and sequenced according to dendrograms derived from ARDRA, to cover most of the bacterial diversity in the clone libraries. None of the clones were identical to any representatives in the Ribosomal Database Project small subunit RNA databases and GenBank. All sequences showed between 77 and 96.8% similarity to the known 16s rRNA sequence from cultured organisms. The 20 clones sequenced fell into seven major lineages of the domain Bacteria: alpha-, delta-, gamma-Proteobacteria, low G+C Gram positive bacteria, high G+C Gram positive bacteria, Sphingobacteria (Cytophaga) and Cyanobacteria (chloroplast). Among the clones, the Proteobacteria were dominant.

• Korean Journal of Fisheries and Aquatic Sciences
• /
• v.31 no.5
• /
• pp.665-672
• /
• 1998

Feeding habits of Conger myiaster collected from the eelgrass bed in Kwangyang Bay from January 1994 to December 1994 were studied. C. myiaster was a carnivore which consumed mainly fishes, shrimps and crabs. Its diets included small quantities of amphipods, gastropods, cephalopods, polychaetes, mysids, cumaceans and isopods. It showed ontogenetic changes in feeding habits. Small indinviduals preyed on shrimps, fishes, crabs, and gammarid amphipods in nearly equal proportions. While the portion of the stomach contents attributable to shrimps and gammarid amphipods decreased with increasing fish size, consumption of fishes increased progressively. C. myiaster showed very constant prey selection regardless of prey availability-Especially fishes were heavily selected by this species throughout the year, although availability of fishes was lower than any other prey organisms in the eelgrass bed.

• Journal of Ginseng Research
• /
• v.37 no.2
• /
• pp.227-247
• /
• 2013

MicroRNAs (miRNAs) are a class of recently discovered non-coding small RNA molecules, on average approximately 21 nucleotides in length, which underlie numerous important biological roles in gene regulation in various organisms. The miRNA database (release 18) has 18,226 miRNAs, which have been deposited from different species. Although miRNAs have been identified and validated in many plant species, no studies have been reported on discovering miRNAs in Panax ginseng Meyer, which is a traditionally known medicinal plant in oriental medicine, also known as Korean ginseng. It has triterpene ginseng saponins called ginsenosides, which are responsible for its various pharmacological activities. Predicting conserved miRNAs by homology-based analysis with available expressed sequence tag (EST) sequences can be powerful, if the species lacks whole genome sequence information. In this study by using the EST based computational approach, 69 conserved miRNAs belonging to 44 miRNA families were identified in Korean ginseng. The digital gene expression patterns of predicted conserved miRNAs were analyzed by deep sequencing using small RNA sequences of flower buds, leaves, and lateral roots. We have found that many of the identified miRNAs showed tissue specific expressions. Using the insilico method, 346 potential targets were identified for the predicted 69 conserved miRNAs by searching the ginseng EST database, and the predicted targets were mainly involved in secondary metabolic processes, responses to biotic and abiotic stress, and transcription regulator activities, as well as a variety of other metabolic processes.