• Title/Summary/Keyword: similarity coefficient

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Genetic Diversity of Barley Cultivars as Revealed by SSR Masker

  • Kim, Hong-Sik;Park, Kwang-Geun;Baek, Seong-Bum;Suh, Sae-Jung;Nam, Jung-Hyun
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.47 no.5
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    • pp.379-383
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    • 2002
  • Allelic diversity of 44 microsatellite marker loci originated from the coding regions of specific genes or the non-coding regions of barley genome was analyzed for 19 barley genotypes. Multi-allelic variation was observed at the most of marker loci except for HVM13, HVM15, HVM22, and HVM64. The number of different alleles ranged from 2 to 12 with a mean of 4.0 alleles per micro-satellite. Twenty-one alleles derived from 10 marker loci are specific for certain genotypes. The level of polymorphism (Polymorphic Information Content, PIC) based on the band pattern frequencies among genotypes was relatively high at the several loci such as HVM3, HVM5, HVM14, HVM36, HVM62 and HVM67. In the cluster analysis using genetic similarity matrix calculated from microsatellite-derived DNA profiles, two major groups were classified and the spike-row type was a major factor for clustering. Correlation between genetic similarity matrices based on microsatellite markers and pedigree data was highly significant ($r=0.57^{**}$), but these two parameters were moderately associated each other. On the other hand, RAPD-based genetic similarity matrix was more highly associated with microsatellite-based genetic similarity ($r=0.63^{**}$) than coefficient of parentage.

An Extended Similarity Solution for One-Dimensional Multicomponent Alloy Solidification in the Presence of Shrinkage-Induced Flow (체적수축유동이 있는 일차원 다원합금 응고에 대한 확장된 해석해)

  • Chung, Jae-Dong;Yoo, Ho-Seon;Choi, Man-Soo;Lee, Joon-Sik
    • Transactions of the Korean Society of Mechanical Engineers B
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    • v.24 no.3
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    • pp.426-434
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    • 2000
  • This paper deals with a generalized similarity solution for the one-dimensional solidification of ternary or higher-order multicomponent alloys. The present approach not only retains the existing features of binary systems such as temperature- solute coupling, shrinkage-induced flow, solid-liquid property differences, and finite back diffusion, but also is capable of handling a multicomponent alloy without restrictions on the partition coefficient and microsegregation parameter. For an alloy of N-solute species, governing equations in the mushy region reduce to (N+2) nonlinear ordinary differential equations via similarity transformation, which are to be solved along with the closed-form solutions for the solid and liquid regions. A linearized correction scheme adopted in the solution procedure facilitates to determine the solidus and liquidus positions stably. The result for a sample ternary alloy agrees excellently with the numerical prediction as well as the reported similarity solution. Additional calculations are also presented to show the utility of this study. Finally, it is concluded that the present analysis includes the previous analytical approaches as subsets.

Morphological and Genetic Diversity of Korean Native and Introduced Safflower Germplasm

  • Shim Kang-Bo;Bae Seok-Bok;Lim Si-Kyu;Suh Duck-Yong
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.49 no.4
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    • pp.337-341
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    • 2004
  • Morphological and genetic diversity of thirty nine safflower germplasm were collected and evaluated by Principal Component Analysis (PCA) and Random Amplified Polymorphic DNA (RAPD) method. Stem length and seeding to flowering days of the safflower germplasm showed $26\~117cm\;and\;76\~179$ days of variation respectively. USA originated germplasm showed higher oil content as $39\%$, but that of Japanese showed lower as $26\%$. PCA made three different cluster groups according to some agronomic characteristics of safflower. Korea originated germplasm showed similar cluster group with that of collected from USA in the PCA of stem length. But in the seeding to flowering days, it showed similar cluster pattern with that of collected from Japan rather than USA. In the experiment of RAPD analysis, total five primers showed polymorphism at the several chromosomal loci. Korea, China Japan and South Central Asia originated germplasm were differently classified with USA and South West Asia originated germplasm with lower similarity coefficient value (0.47). Most of Korea originated germplasm were grouped with South Central Asia originated germplasm with higher similarity coefficient value (0.74) conferring similar genetic background between both of them. China and Japan originated germplasm were dendrogramed with Korea originated germplasm at the 0.65 and 0.50 similarity coefficient values respectively. Some common results were expected from both of PCA and RAPD analysis, but lower genetic heritability caused by relative higher portion of environmental variance and environment by genotype interaction at the expression of those of agronomic characteristics made constraint to find any reliable results.

Tabu Search Algorithm for Frequency Reassignment Problem in Mobile Communication Networks (주파수 재할당 문제 해결을 위한 타부 서치 알고리듬 개발)

  • Han, Junghee
    • Journal of Korean Institute of Industrial Engineers
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    • v.31 no.1
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    • pp.1-9
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    • 2005
  • This paper proposes the heuristic algorithm for the generalized GT problems to consider the restrictions which are given the number of machine cell and maximum number of machines in machine cell as well as minimum number of machines in machine cell. This approach is split into two phase. In the first phase, we use the similarity coefficient which proposes and calculates the similarity values about each pair of all machines and sort these values descending order. If we have a machine pair which has the largest similarity coefficient and adheres strictly to the constraint about birds of a different feather (BODF) in a machine cell, then we assign the machine to the machine cell. In the second phase, we assign parts into machine cell with the smallest number of exceptional elements. The results give a machine-part grouping. The proposed algorithm is compared to the Modified p-median model for machine-part grouping.

Parameterization of Along-Wind Dispersion Coefficients based on Field and Wind Tunnel Data

  • Kang, Sung-Dae
    • Environmental Sciences Bulletin of The Korean Environmental Sciences Society
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    • v.10 no.S_1
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    • pp.11-22
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    • 2001
  • Observations related to the along-wind dispersion of puffs were collected from 12 field sites and from a wind tunnel experiment and used to test simple similarity relations. Because most of the date made use of concentration time series observation from fixed monitors, the basic observation was t, the standard deviation of the concentration time series. This data also allowed the travel time, t, from the source to the receptor to be estimated, from which the puff advective speed ue, could be determined. The along-wind dispersion coefficient, x, was then assumed to equal tue. The data, which extended over four orders of magnitude, supported the similarity relations t=0.1 t and x=1.8 $u^*$t, where t is the travel time and $u^*$ is the friction velocity. About 50% of the observations were within a factor of two of the predictions based on the similarity relations.

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An Efficient Design Method of RF Filters via Optimized Rational-Function Fitting, without Coupling-Coefficient Similarity Transformation (무 결합계수-회전변환의, 최적화된 유리함수 Fitting에 의한 효율적인 RF대역 여파기 설계기법)

  • Ju Jeong-Ho;Kang Sung-Tek;Kim Hyeong-Seok
    • 한국정보통신설비학회:학술대회논문집
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    • 2006.08a
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    • pp.202-204
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    • 2006
  • A new method is presented to design RF filters without the Similarity Transform of their coupling coefficient matrix as circuit parameters which is very tedious due to pivoting and deciding rotation angles needed during the iterations. The transfer function of a filter is directly used for the design and its desired form is derived by the optimized rational-function fitting technique. A 3rd order Coaxial Lowpass filter and an 8th order dual-mode elliptic integral function response filter are taken as an example to validate the proposed method.

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Empirical Comparison of Word Similarity Measures Based on Co-Occurrence, Context, and a Vector Space Model

  • Kadowaki, Natsuki;Kishida, Kazuaki
    • Journal of Information Science Theory and Practice
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    • v.8 no.2
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    • pp.6-17
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    • 2020
  • Word similarity is often measured to enhance system performance in the information retrieval field and other related areas. This paper reports on an experimental comparison of values for word similarity measures that were computed based on 50 intentionally selected words from a Reuters corpus. There were three targets, including (1) co-occurrence-based similarity measures (for which a co-occurrence frequency is counted as the number of documents or sentences), (2) context-based distributional similarity measures obtained from a latent Dirichlet allocation (LDA), nonnegative matrix factorization (NMF), and Word2Vec algorithm, and (3) similarity measures computed from the tf-idf weights of each word according to a vector space model (VSM). Here, a Pearson correlation coefficient for a pair of VSM-based similarity measures and co-occurrence-based similarity measures according to the number of documents was highest. Group-average agglomerative hierarchical clustering was also applied to similarity matrices computed by individual measures. An evaluation of the cluster sets according to an answer set revealed that VSM- and LDA-based similarity measures performed best.

Parentage Identification of 'Daebong' Grape (Vitis spp.) Using RAPD Analysis

  • Kim, Seung-Heui;Jeong, Jae-Hun;Kim, Seon-Kyu;Paek, Kee-Yoeup
    • Journal of Plant Biotechnology
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    • v.4 no.2
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    • pp.67-70
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    • 2002
  • The RAPD data were used to assess genetic similarity among f grape cultivars. Of the 100 random primers tested on genomic DNA, 10 primers could be selected for Benetic analysis, and the selected primers generated a total of 115 distinct amplification fragments. A similarity matrix was constructed on the basis of the presence or absence of bands. The 7 grape cultivars analyzed with UPGMA were clustered into two groups of A and B. The similarity coefficient value of cultivars was high. The mean similarity index for all pairwise comparisons was 0.851, and ranged from 0.714 ('Rosaki' and 'Black Olympia') to 0.988 ('Kyoho' and 'Daebong'). After due consideration of differences in cultural and morphological characteristics of these two theoretically identical cultivars, it could be deduced that 'Daebong' is a bud sport of 'Kyoho' cultivar.

A heuristic algorithm for forming machine cells and part families in group technology (그룹 테크놀러지에서의 기계 및 부품군을 형성하기 위한 발견적 해법)

  • Ree, Paek
    • Journal of Korean Institute of Industrial Engineers
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    • v.22 no.4
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    • pp.705-718
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    • 1996
  • A similarity coefficient based algorithm is proposed to solve the machine cells and part families formation problem in group technology. Similarity coefficients are newly designed from the machine-part incidence matrix. Machine cells are formed using a recurrent neural network in which the similarity coefficients are used as connection weights between processing units. Then parts are assigned to complete the cell composition. The proposed algorithm is applied to 30 different kinds of problems appeared in the literature. The results are compared to those by the GRAFICS algorithm in terms of the grouping efficiency and efficacy.

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Coupling Matrix Synthesis Methods for RF/Microwave Filter Design (초고주파용 필터설계를 위한 결합행렬 합성법)

  • Choi, Dong-Muk;Kim, Che-Young
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.32 no.12A
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    • pp.1346-1353
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    • 2007
  • In this paper, the methods are presented for the calculation of general coupling coefficient matrixes used in the band pass filter design. They are calculated from transmission coefficient($S_{21}$) and reflection coefficient($S_{11}$) with desired characteristics derived from the poles of filter function and return loss(RL). The calculated matrixes from this method are transformed to the folded canonical filter structure using similarity transformation which lends us the practical filter design. Based on the resulting matrix, the folded canonical filter has been designed.