• Title/Summary/Keyword: signal molecule

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Fluorescence photon counting rate as a function of dye concentration: Effect of dead time of photon detector (색소 농도에 따른 형광 광자의 계수율 : 광자 검출기의 dead time 효과)

  • 고동섭
    • Korean Journal of Optics and Photonics
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    • v.8 no.4
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    • pp.353-355
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    • 1997
  • A single molecule detection system, which consists of confocal fluorescence microscope and single photon counter, has been used to observe the dye concentration dependence of photon counting rate. With increasing concentration, a saturation effect of counting is observed and demonstrated on the basis of the dead time of photon detector. The equations presented here show the relations between the counting rate and some parameters such as probe volume, quantum efficiency of detector, and fluorescence photon number entered onto detector. The signal-to-noise ratio is also discussed briefly.

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DNA Chip using Single Stranded Large Circular DNA: Low Background and Stronger Signal Intensity

  • Park, Jong-Gu
    • Biomedical Science Letters
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    • v.10 no.2
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    • pp.75-84
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    • 2004
  • Massive identification of differentially expressed patterns has been used as a tool to detect genes that are involved in disease related process. We employed circular single stranded sense molecules as probe DNA for a DNA chip. The circular single stranded DNAs derived from 1,152 unigene cDNA clones were purified in a high throughput mode from the culture supernatant of bacterial transformants containing recombinant phagemids and arrayed onto silanized slide glasses. The DNA chip was examined for its utility in detection of differential expression profile by using cDNA hybridization. Hybridization of the single stranded probe DNA were performed with Cy3- or Cy5-labeled target cDNA preparations at $60^\circ$C. Dot scanning performed with the hybridized slide showed 29 up-regulated and 6 down-regulated genes in a cancerous liver tissue when compared to those of adjacent noncancerous liver tissue. These results indicate that the circular single stranded sense molecules can be employed as probe DNA of arrays in order to obtain a precious panel of differentially expressed genes.

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Nanoscale-NMR with Nitrogen Vacancy center spins in diamond

  • Lee, Junghyun
    • Journal of the Korean Magnetic Resonance Society
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    • v.24 no.2
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    • pp.59-65
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    • 2020
  • Nitrogen-Vacancy (NV) center in diamond has been an emerging versatile tool for quantum sensing applications. Amongst various applications, nano-scale nuclear magnetic resonance (NMR) using a single or ensemble NV centers has demonstrated promising results, opening possibility of a single molecule NMR for its chemical structural studies or multi-nuclear spin spectroscopy for quantum information science. However, there is a key challenge, which limited the spectral resolution of NMR detection using NV centers; the interrogation duration for NV-NMR detection technique has been limited by the NV sensor spin lifetime (T1 ~ 3ms), which is orders of magnitude shorter than the coherence times of nuclear spins in bulk liquid samples (T2 ~ 1s) or intrinsic 13C nuclear spins in diamond. Recent studies have shown that quantum memory technique or synchronized readout detection technique can further narrow down the spectral linewidth of NMR signal. In this short review paper, we overview basic concepts of nanoscale NMR using NV centers, and introduce further developments in high spectral resolution NV NMR studies.

POSSIBLE DERIVATIONS OF ORTHO- AND PARA-$H_2$ RATIOS IN THE ATMOSPHERES OF THE GIANT PLANETS USING THE $2\mu m$ SPECTRAL STRUCTURES OF $(H_2)_2$

  • Kim, Sang-Joon;Lee, Yong-Sik
    • Journal of Astronomy and Space Sciences
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    • v.18 no.2
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    • pp.95-100
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    • 2001
  • We have presented an ab initio model of the $2{mu}m$ spectral features of $(H_2)_2$ based on the far-infrared models of McKellar & Schaefer (1991). We have shown that the intensity variations of the $2{mu}m;(H_2)_2$ features depend on the ortho/para ratios of $H_2$ We have discussed the applicability of the variations to the atmospheres of the giant planets for the derivations of the ortho/para ratios. The signal to noise ratios of currently available spectra of the giant planets are not sufficient enough to derive accurate ortho/para ratios of these planets. Observations with longer exposure times and larger telescope apertures are required to obtain better spectra for the derivations of the ortho/para ratios of $H_2$ in the atmospheres of the giant planets.

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NO measurements in lean and soot flame using KrF laser (KrF 레이저를 이용한 희박연소화염과 매연화염에서의 NO계측)

  • 손성민;고동섭;이중재;오승묵;강건용;김종욱
    • Korean Journal of Optics and Photonics
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    • v.12 no.3
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    • pp.177-183
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    • 2001
  • The KrF laser was employed to study NO fluorescence in lean-bum as well as in soot-bum flames. Blue-shifted NO fluorescence was observed in both of the flames. For both of the flames, the fluorescence intensity of NO and its relative background noise signal were measured with respect to the concentration of seeded NO molecule in the flame and the laser intensity. The results were analyzed qualitatively. Also, NO concentration distribution in the lean-bum flame was qualitatively determined from the intensity of the NO fluorescence. cence.

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Role of estrogen and RAS signaling in repeated implantation failure

  • Hong, Kwonho;Choi, Youngsok
    • BMB Reports
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    • v.51 no.5
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    • pp.225-229
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    • 2018
  • In humans, hormonal regulation is crucial for the preparation of uterine environment leading to either successful implantation or menstrual cycle. Estrogen is a pivotal female steroid hormone that regulates the uterine dynamics along with progesterone in the estrous and menstrual cycles in humans. Estrogen signals act via nuclear estrogen receptor or membrane-bound receptor. The membrane-bound estrogen receptor plays a crucial role in the rapid response of estrogen in the uterine epithelium. Recently, RASD1 has received attention as a novel signal transducer of estrogen in various systems including female reproductive organs. In this review, we discuss the regulation of estrogen and RASD1 signaling in the uterus and also provide insights into RAS as a novel signaling molecule in repeated implantation failure.

Cell cycle-related kinase is a crucial regulator for ciliogenesis and Hedgehog signaling in embryonic mouse lung development

  • Lee, Hankyu;Ko, Hyuk Wan
    • BMB Reports
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    • v.53 no.7
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    • pp.367-372
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    • 2020
  • Cell cycle-related kinase (CCRK) has a conserved role in ciliogenesis, and Ccrk defects in mice lead to developmental defects, including exencephaly, preaxial polydactyly, skeletal abnormalities, retinal degeneration, and polycystic kidney. Here, we found that Ccrk is highly expressed in mouse trachea and bronchioles. Ccrk mutants exhibited pulmonary hypoplasia and abnormal branching morphogenesis in respiratory organ development. Furthermore, we demonstrated that Ccrk mutant lungs exhibit not only impaired branching morphogenesis but also a significant sacculation deficiency in alveoli associated with reduced epithelial progenitor cell proliferation. In pseudoglandular stages, Ccrk mutant lungs showed a downregulation of Hedgehog (Hh) signaling and defects in cilia morphology and frequency during progenitor-cell proliferation. Interestingly, we observed that activation of the Hh signaling pathway by small-molecule smoothened agonist (SAG) partially rescued bud morphology during branch bifurcation in explants from Ccrk mutant lungs. Therefore, CCRK properly regulates respiratory airway architecture in part through Hh-signal transduction and ciliogenesis.

QUENCHING OF TYPE II PHOTOSENSITIZER IN THEIR TRIPLET STATES BY $\alpha$-TOCOPHEROL VIA AN ELECTRON TRANSFER REACTION

  • Boo, Yong-Chool;Lee, Keum-Pyo;Jung, Jin
    • Journal of Photoscience
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    • v.5 no.3
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    • pp.125-129
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    • 1998
  • Occurrence of an electron (or H atom equivalent to one electron plus H+) transfer from $\alpha$- tocopherol $\alpha$(TOH) to a number of photosensitizers in theri triplet states were investigated by monitoring the ESR signal of $\alpha$-chromaoxyl radical ($\alpha$(TO.) in ethanolic solutions of $\alpha$TOH and the sensitizers under continuous illumination. Every sensitizer molecule examined, such as protocholorophyllide (Pchl), hematoporphyrin and rose bengal which are generally regarded as efficient type II photosensitizers and thus have long-lived triplet states, was found to actively participate in an electro transfer reaction with $\alpha$TOH even under air-saturation conditions, generating $\alpha$TOH complex as an intermediate in a fashion of Michaelis-Menten type of reaction. For the reaction of $\alpha$TOH with triplet Pchl, the rate law was derived by applying the steady approximation for the binary complex, triplet Pchl-$\alpha$TOH , which turned out to be well consistent with the kinetic data.

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Spectroscopic Study of the Ã1A" - X~1A' System of CHBr

  • Shin, Seung-Keun;Park, Seung-Min
    • Bulletin of the Korean Chemical Society
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    • v.32 no.3
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    • pp.905-908
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    • 2011
  • We report fluorescence excitation and emission spectra of the CHBr molecule generated via pyrolysis of $CH_3Br$ in a molecular beam experiment. The 193 nm attenuation cross sections were estimated from the reduction of the CHBr signal as a function of the excimer laser fluence. The derived 193 nm absorption cross section for CHBr [$(3.24{\pm}0.59){\times}10^{-17}\;cm^2$] is slightly higher than the absorption cross section previously determined for CHCl [$(2.6{\pm}0.8){\times}10^{-17}\;cm^2$], but the difference is within the estimated uncertainties in the measured cross section.

Effect of Acetic Acid on Bacteriocin Production by Gram-Positive Bacteria

  • Ge, Jingping;Kang, Jie;Ping, Wenxiang
    • Journal of Microbiology and Biotechnology
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    • v.29 no.9
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    • pp.1341-1348
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    • 2019
  • Acetic acid is indirectly involved in cell center metabolism, and acetic acid metabolism is the core of central metabolism, affecting and regulating the production of bacteriocin. Bacteriocin is a natural food preservative that has been used in the meat and dairy industries and winemaking. In this paper, the effects of acetic acid on bacteriocin produced by Gram-positive bacteria were reviewed. It was found that acetic acid in the undissociated state can diffuse freely through the hydrophobic layer of the membrane and dissociate, affecting the production, yield, and activity of bacteriocin. In particular, the effect of acetic acid on cell membranes is summarized. The link between acetic acid metabolism, quorum sensing, and bacteriocin production mechanisms is also highlighted.