• 한국정보과학회논문지:데이타베이스
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• 제31권6호
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• pp.596-608
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• 2004

디스크 입출력 성능에 의해서 많은 영향을 받는 대용량의 데이타를 저장하고 처리하는 시스템에서 데이타를 다수의 병렬 디스크에 분산 시켜 저장한 후 질의 처리 시 디스크 접근 시간을 감소시키기 위한 노력들이 많이 행해졌다. 대부분의 이전 연구들은 데이타 공간이 정형의 그리드 형태로 분할되어 있다는 가정 하에 각 그리드 셀에 대해서 효과적으로 디스크 번호를 할당하는 알고리즘 연구에 치중하였다. 하지만, 그리드 형태의 분할은 저차원 데이타에 대해서는 효과적이지만 고차원 데이타에 대해서는 우수한 디스크 할당 알고리즘을 적용하더라도 디클러스터링에 의한 성능 향상을 이룰 수가 없다. 그 이유는 그리드 분할 방법은 데이타 분포 비율에 관계없이 전체 데이타 공간을 동일한 비율로 분할하기 때문이다. 고차원 데이타는 대부분 데이타 공간의 표면에 존재한다. 본 논문에서는 이와 같은 현상을 고려하여 데이타 표면으로부터 주기적으로 편중 분할하는 알고리즘을 이용한 새로운 디클러스터링 알고리즘을 제시한다. 다양한 실험 결과에 의하면 표면으로부터 주기적으로 편중 분할하는 방법은 차원이 증가할 수록, 또한 질의 크기가 증가할 수록 그리드 형태의 분할에 비해서 질의를 만족하는 데이타 블록의 수를 현저히 감소시킬 수 있다. 본 논문에서는 분할 결과 데이타 블록들의 배치(layout)를 이용한 디스크 번호 할당 알고리즘들을 제시하였다. 우리는 제시한 알고리즘의 성능을 보이기 위해서 다양한 차원과 디스크 수에 대해서 여러 가지 실험을 하였다. 본 연구에서 제시한 디스크 할당 알고리즘은 절대 최적의 디스크 할당 방법에 비해서 추가적인 디스크 접근 횟수가 10번을 넘지 않는다. 디클러스터링 알고리즘의 응답 시간에 대해서 그리드 분할에 대해서 가장 좋은 성능을 보이는 것으로 알려져 있는 Kronecker sequence을 이용한 디스크 할당 알고리즘과 비교하였으며 차원이 높아짐에 따라 최대 14배까지 성능이 향상된다.

• 대한한방내과학회지
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• 제44권3호
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• pp.485-505
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• 2023

Objective: The purpose of this study is to assess the effectiveness and safety of using Taeksa-tang for dyslipidemia through a systematic review and meta-analysis of randomized controlled trials (RCTs). Methods: The search was conducted using keywords such as "dyslipidemia", "hyperlipidemia", "taeksa tang", "zexie tang", and "takusha to" in 12 databases (Pubmed, Cochrane, Embase, ScienceDirect, CNKI, Wanfang, CiNii, RISS, KISS, ScienceON, OASIS, and DBpia) on April 13, 2023. There were no limits on the publication period and language. Cochrane's risk of bias (RoB) was used to evaluate the quality of the studies. A meta-analysis was conducted according to the outcome measurements such as total effective rate (TER), total cholesterol (TC), triglyceride (TG), HDL-cholesterol (HDL-C), LDL-cholesterol (LDL-C), and adverse effects, using the Review Manager web. Results: A total of 9 RCTs were selected. In evaluating the RoB, 2 studies mentioning the random sequence generation, 1 study conducting double blindness, and 8 studies without missing values were evaluated as low risk, while 1 study without mentioning the random sequence generation was evaluated as high risk. All other parts were evaluated as unclear risk. The treatment group (Taeksa-tang or Taeksa-tang-gagam) showed more statistically significant effects compared to the control group (Western medicine or Chinese patent medicine) in TER (RR : 1.24, 95% CI 1.15 to 1.34, P<0.00001), TC (MD : -1.12, 95% CI -1.68 to -0.56, P<0.0001), TG (MD : -1.08, 95% CI -1.65 to -0.51, P=0.0002), HDL-C (MD : 0.63, 95% CI 0.34 to 0.93, P<0.0001), LDL-C (MD : -0.81, 95% CI -1.10 to -0.53, P<0.00001). In addition, the treatment group showed lower adverse effects compared to the control group (RR : 0.30, 95% CI 0.12 to 0.74, P=0.008). Conclusion: This study suggests that Taeksa-tang is effective and safe to use for treating dyslipidemia. However, due to the low quality of the included studies, more clinical studies need to be conducted in the future to increase the possibility of clinical use.

• Asian-Australasian Journal of Animal Sciences
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• 제18권2호
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• pp.170-178
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• 2005

An in silico approach was developed to survey the genes expressed in four internal organs of pig: liver, kidney, spleen and small intestine. The major procedures of the approach included: (1) BLAST searching against GenBank "est_others" database using human cDNA sequences as queries to screen the porcine orthologous expressed sequence tags (ESTs), (2) classifying the porcine ESTs records by resources according to certain criteria and (3) analyzing data for ESTs specifically expressed in each organ. In order to do so, four Java programs were developed. Based on the ESTs available in the GenBank database, it was found that there were at least 2,100 genes expressed in these four organs, including 128 in the liver, 81 in the kidney, 780 in the spleen, and 1,423 in the small intestine respectively (a few genes co-expressed in these tissues). Gene expression patterns, such as co-expressed genes, preferentially expressed genes and basic active genes were also compared and characterized among these organs. This study provides a comprehensive model on how to use the bioinformatics approach and Genbank databases to facilitate the discovery of new genes in livestock species.

• 대한기계학회논문집
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• 제18권3호
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• pp.768-776
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• 1994

This paper describes computer-aided forging design for rib/web shaped parts. In manufacturing a part by means of forging process, the first step is to design the forging. This is done by modifying the given machined part geometry according to the requirements of the forging process. Traditionally, this is done by experienced forging designers using empirical forging design guidelines. Generally, it would be neither possible nor practical to develop a system which encompasses the design of all types of forgings. Accordingly, forging design can be simplified by considering critical two dimensional cross sections of the machined part geometry. This system is composed of three modules(process variable decision module, forging design module and redesign module) and each module is carried out in regular sequence. In the process variable decision module, first of all, the undercut is checked and modified, and then deep recesses and holes difficult to forge are eliminated. Also parting line, forging plane, forging plan view area, forging weight and maximum size(maximum height or width)are determined. In the forging design module, the magnitude of various allowances, draft angle, minimum web thickness, corner and fillet radius are determined and then geometry modification is performed. Finally, since the design rules and databases used in this system are based on parameters of the forging geometry, such as the trimmed forging plan area, forging weight, forging maxmum size, plausible estimates need to be made for these parameters. Therefore, in the re-design module, the design process is iterated until a satisfactory forging is obtained.

• 생명과학회지
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• 제14권6호
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• pp.997-1002
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• 2004

이 논문은 단백질의 기능분석을 위해 핵심적으로 요구되는 단백질 상호작용 관계정보 및 기능정보 등을 체계적으로 제공할 수 있는 WASPIFA (Web-based Assistant System for Protein-protein Interaction and function Analysis) 시스템에 대해서 다루고 있다. WASPIFA 시스템은 특정 분야에 국한해서 단편적 정보를 제공하는 기존의 단백질 기능 및 상호작용 분석 시스템과는 달리 분석하고자 하는 서열의 종합적인 정보 즉, 기능정보 및 주석정보, 도메인 정보, 상호작용 관계정보 등을 제공한다. 일반 검색 및 분석 시스템에서 제공하지 못하는 종합적인 정보들은 다양한 전처리 과정을 통해서 얻어진 데이터 및 정보 등을 시스템 내에 로컬 데이터베이스화해 놓은 것이다. 최종 사용자는 종합적인 정보를 통해서 올바른 평가와 판단을 통해서 효과적인 단백질 상호작용 분석과 기능분석을 행할 수 있다. 또한 자동관리 및 데이터 갱신 기능을 갖추고 있어 시스템 관리자가 효율적으로 시스템을 유지 및 관리할 수 있다.

• 식물병연구
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• 제17권3호
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• pp.386-390
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• 2011

2011년 6월에 김천과 무안의 호두나무 재배지에서 잎에 노균병 병징과 유사한 증상이 관찰되었다. 병든 잎의 뒷면에는 다각형의 병반에 흰색의 곰팡이가 눈꽃처럼 형성되었고, 상응하는 잎의 앞면에는 퇴록 부분이 생겼다. 병세가 진전되면서 병든 조직은 붕괴되었고 나중에는 괴사되었다. 이 병의 원인균은 형태적 및 배양적 특징으로 보아 Microstroma juglandis로 동정되었다. 또한 균주의 ITS rDNA 염기서열을 GenBank에 등록된 M. juglandis의 자료와 비교하여 100% 일치함을 확인하였다. 호두나무 묘목에 병원성 검정을 실시하여 코흐의 원칙을 만족시켰다. 이 병은 지금까지 북미, 유럽, 오세아니아 그리고 서아시아(인도, 파키스탄, 터키)에서 보고되었다. 이 연구를 통하여 한국을 포함한 동아시아에서는 이 병을 처음으로 보고하며, 병명은 '호두나무 흰곰팡이병'으로 제안한다.

• Molecular & Cellular Toxicology
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• 제1권1호
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• pp.17-25
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• 2005

There are some critical drawbacks in the use of biomarkers for a global assessment of the toxicological impacts many chemicals and environmental pollutants have, primarily due to an individual biomarker's specificity for an explicit chemical or toxicant. In other words, the biomarker-based assessment methodology used to analyze toxicological effects lacks a high-throughput capability. Therefore, eco-toxicogenomics, or the study of toxicogenomics with organisms present within a given environmental locale, has recently been introduced with the advent of the so-called "-omics" era, which began with the creation of microarray technologies. Fish are comparable with humans in their toxicological responses and thus data from toxicogenomic studies performed with fish could be applied, with appropriate tools and implementation protocols, to the evaluation of environments where human or animal health is of concern. At present, there have been very active research streams for developing expression sequence tag (EST) databases (DBs) for zebra fish and rainbow trout. Even though few reports involve toxicogenomic studies with fish, a few groups have successfully fabricated and used cDNA microarrays or oligo DNA chips when studying the toxicological impacts of hypoxia or some toxicants with fish. Furthermore, it is strongly believed that this technology can also be implemented with non-model fish. With the standardization of DNA microarray technologies and ample progress in bioinformatics and proteomic technologies, data obtained from DNA microarray technologies offer not only multiple biomarker assays or an analysis of gene expression profiles, but also a means of elucidating gene networking, gene-gene relations, chemical-gene interactions, and chemical-chemical relationships. Accordingly, the ultimate target of eco-toxicogenomics should be to predict and map the pathways of stress propagation within an organism and to analyze stress networking.

• BMB Reports
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• 제39권4호
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• pp.441-447
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• 2006

Abuse of drugs can elicit compulsive drug seeking behaviors upon repeated administration, and ultimately leads to the phenomenon of addiction. We developed a procedure for the standardization of microarray gene expression data of rat brain in drug addiction and stored them in a single integrated database system, focusing on more effective data processing and interpretation. Another characteristic of the present database is that it has a systematic flexibility for statistical analysis and linking with other databases. Basically, we adopt an intelligent SQL querying system, as the foundation of our DB, in order to set up an interactive module which can automatically read the raw gene expression data in the standardized format. We maximize the usability of this DB, helping users study significant gene expression and identify biological function of the genes through integrated up-to-date gene information such as GO annotation and metabolic pathway. For collecting the latest information of selected gene from the database, we also set up the local BLAST search engine and non-redundant sequence database updated by NCBI server on a daily basis. We find that the present database is a useful query interface and data-mining tool, specifically for finding out the genes related to drug addiction. We apply this system to the identification and characterization of methamphetamine-induced genes' behavior in rat brain.

• Preventive Nutrition and Food Science
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• 제7권4호
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• pp.432-436
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• 2002

A proteomic map of Hanwoo loin was obtained using 2-D SDS-PAGE and mass spectrometric analysis: 27 bovine proteins plus 2 proteins having similarities to other mammal proteins out of 52 proteins analyzed. The identified proteins consisted of 50 % basic house keeping proteins involved in metabolism, 30% muscle proteins, and other miscellaneous proteins. Many proteins on the 2-D gel with different molecular weights and isoelectric points were identified as same proteins due to posttranslational modification. As many of the identified house keeping proteins showed the high sequence similarities to other mammal equivalent proteins, searching the mammal databases could confirm the annotation. The preliminary identification of the proteome in bovine loin tissue could reveal the functions of proteins at over 50 % of chance with high fidelities. Using the established loin proteome map, proteomic difference between 1 yr and 2 yr Hanwoo loin tissues were compared on 2D gel. Regardless of the difficulty normalizing protein concentrations and sample-to-sample variations, three unidentified proteins and myoglobin were selected as up-regulated proteins during the fat deposition period. This study contributes to a move thorough and holistic understanding of beef meat, helping to build the basis for future identification of new markers for good quality meat.

• 농업과학연구
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• 제43권2호
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• pp.221-231
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• 2016

Microsatellites, which are sequences of repetitive short nucleotides, are abundant in the genome and have relatively many alleles at a locus. Hence, microsatellite markers are used in various research areas such as medicine, agriculture, and biology. Thanks to recent advanced techniques and databases associated with microsatellite marker development, foreign research relying on microsatellite markers is increasing in various study areas. In this study, by analyzing microsatellites-related articles published during 2000-2014 from eight Korean national journals representing zoology, botany, genetics, ecology and environmental science, breeding science, and forest science ('Animal Cells and Systems', 'Journal of Plant Biology', 'Genes and Genomics', 'Korean Society of Environment and Ecology', 'Korean Journal of Breeding Science', 'Journal of Agricultural Science, Chungnam National University', 'Journal of Korean Forest Society' and 'Forest Science and Technology'), we found that the number of articles and diversity of study subjects and objects have increased considerably. However, there are fewer applications of microsatellites in the national forest science area. During 2000-2014 in 'Journal of Korean Forest Society', the percentage of articles dealing with microsatellite markers was found to be the lowest with 4.2% among articles focusing on PCR-based markers including RAPD, AFLP, and ISSR. However, in 'Canadian Journal of Forest Research' and 'Forest Ecology and Management', microsatellite marker articles were represented at their highest with 69.2% and 76.2%, respectively. Given the advantages of microsatellite markers, the publication of research papers using microsatellites should be increased in Korean forest science journals to the level of studies published in prominent international journals.