In silico Discovery of Genes Expressed in Liver, Kidney, Spleen and Small Intestine of Pigs
![]() ![]() |
Pan, Zengxiang
(College of Animal Science and Technology, Nanjing Agricultural University)
Liu, Honglin (College of Animal Science and Technology, Nanjing Agricultural University) Chen, Jie (College of Animal Science and Technology, Nanjing Agricultural University) Xu, Dan (College of Animal Science and Technology, Nanjing Agricultural University) Jiang, Zhihua (Department of Animal Sciences, Washington State University) Xie, Zhuang (College of Animal Science and Technology, Nanjing Agricultural University) |
1 | Adams, M. D., J. M. Kelley, J. D. Gocayne, M. Dubnick, M. H. Polymeropoulos, H. Xiao, C. R. Merril, A. Wu, B. Olde and R. F. Moreno. 1991. Complementary DNA sequencing: expressed sequence tags and human genome project. Sci. 252:1651-1656 |
2 |
Balas, A., S. Santos, M. J. Aviles, F. Garcia-Sanchez, R. Lillo and J. L. Vicario. 2000. Identification by sequencing based typing and complete coding region analysis of three new HLA class II alleles: DRB3 |
3 | Birney, E., M. Clamp and T. Hubbard. 2002. Databases and tools for browsing genomes. Annu. Rev. Genomics Hum. Genet. 3:293-310 DOI ScienceOn |
4 | Chalasani, N., J. C. Gorski, M. S. Asghar, R. A. Asgha, B. Foresman, S. D. Hall and D. W. Crabb. 2003. Hepatic cytochrome P450 2E1 activity in nondiabetic patients with nonalcoholic steatohepatitis. Hepatology 37:544-550 |
5 | Esposito, G., L. Vitagliano, R. Santamaria, A. Viola, A. Zagari and F. Salvatore. 2002. Structural and functional analysis of aldolase B mutants related to hereditary fructose intolerance. FEBS Lett. 531:152-156 DOI ScienceOn |
6 | Gill, R. W. and P. Sanseau. 2000. Rapid in silico cloning of genes using expressed sequence tags (ESTs). Biotechnol. Ann. Rev. 5:25-44 |
7 | Gorinstein, S., A. Caspi, A. Rosen, I. Goshev, M. Zemser, M. Weisz, M. C. Anon, I. Libman, H. T. Lerner and S. Trakhtenberg. 2002. Structure characterization of human serum proteins in solution and dry state. J. Pept. Res. 59:71-78 |
8 | Ishii, J., H. Adachi, J. Aoki, H. Koizumi, S. Tomita, T. Suzuki, M. Tsujimoto, K. Inoue and H. Arai. 2002. SREC-II, a new member of the scavenger receptor type F family, trans-interacts with SREC-I through its extracellular domain. J. Biol. Chem. 277:39696-39702 |
9 | Martin, K. J. and A. B. Pardee. 2000. Identifying expressed genes. PNAS. 97:3789-3791 |
10 | Meijssen, S., H. van Dijk, C. Verseyden, D. W. Erkelens and M. C. Cabezas. 2002. Delayed and exaggerated postprandial complement component 3 response in familial combined hyperlipidemia. Arterioscler. Thromb. Vasc. Biol. 22:811-816 DOI ScienceOn |
11 | Moriyama, K. and I. Yahara. 2002. Human CAP1 is a key factor in the recycling of cofilin and actin for rapid actin turnover. J. Cell. Sci. 115:1591-1601 |
12 | Nieto, N., S. L. Friedman and A. I. Cederbaum. 2002. Cytochrome P450 2E1-derived reactive oxygen species mediate paracrine stimulation of collagen I protein synthesis by hepatic stellate cells. J. Biol. Chem. 277:9853-9864 |
13 | Pandey, A. and F. Lewitter. 1999. Nucleotide sequence databases: a gold mine for biologists. Trends Biochem. Sci. 24:276-280 DOI |
14 | Rasmussen, T. N., P. Schmidt, S. S. Poulsen and J. J. Holst. 2001a. Localisation and neural control of the release of calcitonin gene-related peptide (CGRP) from the isolated perfused porcine ileum. Regulatory Peptides. 98:137-143 |
15 | Heaton, J. H., W. M. Dlakic, M. Dlakic and T. D. Gelehrter. 2001. Identification and cDNA cloning of a novel RNA-binding protein that interacts with the cyclic nucleotide-responsive sequence in the Type-1 plasminogen activator inhibitor mRNA. J. Biol. Chem. 276:3341-3347 |
16 | Rasmussen, T. N., P. Schmidt, S. S. Poulsen and J. J. Holst. 2001b. Effect of calcitonin gene-related peptide (CGRP) on motility and on the release of substance P, neurokinin A, somatostatin and gastrin in the isolated perfused porcine antrum. Neurogastroenterol. Mot. 13:353-359 |
17 | Saito, Y. and K. Takahashi. 2002. Characterization of selenoprotein P as a selenium supply protein. Eur. J. Biochem. 269:5746-5751 |
18 | Wimmers, K., S. Mekchay, S. Ponsuksili, T. Hardge, M. Yerle and K. Schellander. 2001. Polymorphic sites in exon 15 and 30 of the porcine C3 gene. Animal Genetics 32:40-53 |
19 | Pittois, K., W. Deleersnijder and J. Merregaert. 1998. cDNA sequence analysis, chromosomal assignment and expression pattern of the gene coding for integral membrane protein 2B. Gene. 217:141-149 DOI |
20 | Farber, C. R. and J. F. Medrano. 2003. Putative in silico mapping of DNA sequences to livestock genome maps using SSLP flanking sequences. Animal Genetics 34:11-18 |
21 | Narayanan, B. A., N. K. Narayanan, G. G. Re and D. W. Nixon. 2003. Differential expression of genes induced by resveratrol in LNCaP cells: P53-mediated molecular targets. Int. J. Cancer. 104:204-212 DOI ScienceOn |
22 | Rodriguez-Pombo, P., C. Perez-Cerda, L. R. Desviat, B. Perez and M. Ugarte. 2002. Transfection Screening for Defects in the PCCA and PCCB Genes Encoding Propionyl-CoA Carboxylase Subunits. Mol. Genet. Metab. 75:276-279 DOI ScienceOn |
23 | Lejus, C., A. Fautrel, Y. Malledant and A. Guillouzo. 2002. Inhibition of the cytochrome P450 2E1 by propofol in human and porcine liver microsomes. Biochemical pharmacology. 64:1151-1156 |
24 | Austen, B., O. el-Agnaf, S. Nagala, B. Patel, N. Gunasekera, M. Lee and V. Lelyveld. 2002. Properties of neurotoxic peptides related to the BRI gene. Biochem. Soc. Trans. 30:557-559 DOI ScienceOn |
25 | Buddhikot, M., E. Falkenstein, M. Wehling and S. Meizel. 1999. Recognition of a human sperm surface protein involved in the progesterone-initiated acrosome reaction by antisera against an endomembrane progesterone binding protein from porcine liver. Molecular and Cellular Endocrinology 158:187-193 |
26 | Campeau, E., L. R. Desviat, D. Leclerc, X. Wu, B. Perez, M. Ugarte and R. A. Gravel. 2001. Structure of the PCCA gene and distribution of mutations causing propionic academia. Mol. Genet. Metab. 74:238-247 DOI ScienceOn |
27 | Dumont, P., J. I. Leu, A. C. Della Pietra 3rd, D. L. George and M. Murphy. 2003. The codon 72 polymorphic variants of p53 have markedly different apoptotic potential. Nat. Genet. 33:357-365 DOI ScienceOn |
28 | Guimaraes, D. P. and P. Hainaut. 2002. TP53: a key gene in human cancer. Biochimie. 84:83-93 |
29 | Scarr, R. B. 2002. PDCD2 is a negative regulator of HCF1 (C1). Oncogene. 21:5245-5254 DOI ScienceOn |
30 | Attwood, T. K. and C. J. Miller. 2002. Progress in bioinformatics and the importance of being earnest. Biotechnol. Annu. Rev. 8:1-54 |
31 | Jiang, Z., M. Zhang, V. D. Wasem, J. J. Michal, H. Zhang and R. W. Wright, Jr. 2003. Census of Genes Expressed in Porcine Embryos and Reproductive Tissues by Mining EST Database Based on the Human Genes. Biol. Reprod. 69:1177-1182 |
32 | Lynn, D. J., A. T. Lloyd and C. O'Farrelly. 2003. Bioinformatics: implications for medical research and clinical practice. Clin. Invest. Med. 26:70-74 |
33 | Strausberg, R. L., E. A. Feingold, R. D. Klausner and F. S. Collins. 1999. The Mammalian Gene Collection. Science 286:455-457 |
34 | Yamada, Y., T. Doi, T. Hamakubo and T. Kodama. 1998. Scavenger receptor family proteins: roles for atherosclerosis, host defence and disorders of the central nervous system. Cell Mol. Life Sci. 54:628-640 DOI ScienceOn |
35 | Barnes, M. R. 2002. Psychiatric genetics in silico: databases and tools for psychiatric geneticists. Psychiatric Genetics 12:67-73 |
36 | Shito, M., N. H. Kim, H. Baskaran, A. W. Tilles, R. G. Tompkins, M. L. Yarmush and M. Toner. 2001. In vitro and in vivo evaluation of the Albumin synthesis rate of porcine hepatocytes in a flat-plate bioreactor. Artificial Organs. 25:571-578 DOI ScienceOn |
37 | Pertea, G., X. Huang, F. Liang, V. Antonescu, R. Sultana, S. Karamycheva, Y. Lee, J. White, F. Cheung, B. Parvizi, J. Tsai and J. Quackenbush. 2003. Bioinformatics 19:651-652 |
38 | Bedford, M. T., R. Reed and P. Leder. 1998. WW domainmediated interactions reveal a spliceosome-associated protein that binds a third class of proline-rich motif: the proline glycine and methionine-rich motif. Proc. Natl. Acad. Sci. USA 95:10602-10607 |
39 | Mostert, V. 2000. Selenoprotein P: properties, functions, and regulation. Arch. Biochem. Biophys. 376:433-438 DOI ScienceOn |
40 | Gerdes, D., M. Wehling, B. Leube and E. Falkenstein. 1998. Cloning and tissue expression of two putative steroid membrane receptors. Biol. Chem. 379:907-911 DOI ScienceOn |
41 | Skrabanek, L. and F. Campagne. 2001. Tissueinfo: highthroughput identification of tissues expression profiles and specificity. Nucleic Acids Res. 29:21-102 |
42 | Dearden, P. and M. Akam. 2000. Computational biology: Segmentation in silico. Nature 406:131-132 |
43 | Pruess, M., W. Fleischmann, A. Kanapin, Y. Karavidopoulou, P. Kersey, E. Kriventseva, V. Mittard, N. Mulder, I. Phan, F. Servant and R. Apweiler. 2003. The Proteome Analysis database: a tool for the in silico analysis of whole proteomes. Nucleic Acids Res. 31:414-417 DOI |
44 | Rohrer, G. A., S. C. Fahrenkrug, D. Nonneman, N. Tao and W. C. Warren. 2002. Mapping microsatellite markers identified in porcine EST sequences. Animal Genetics 33:372-376 |
45 | Tolan, D. R. and E. E. Penhoet. 1986. Characterization of the human aldolase B gene. Mol. Biol. Med. 3:245-264 |
46 | Lee, J. H., C. Moran1 and C. S. Park. 2003. Current Status of Comparative Mapping in Livestock. Asian-Aust. J. Anim. Sci. 16:1411-1420 |
![]() |