• Title/Summary/Keyword: restriction analysis

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Implementation of SENKVO and Its Application to the Selectional Restriction for Semantic Analysis of Korean Verbs (한국어 동사 의미처리를 위한 SENKOV의 구축과 공기제약 관계에의 활용)

  • 고병수;정성훈;문유진
    • Proceedings of the Korean Information Science Society Conference
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    • 1998.10c
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    • pp.177-179
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    • 1998
  • 본 논문은 의미론적 어휘개념에 기반한 한국어 동사 Isa 계층구조 시스템을 이용한 Semantic Network을 구축하며, 이를 활용하여 부사와 동사 간의 공기제약관계 설정에 유효한 개념 분류를 수행한다. 일반적으로 많이 쓰이는 한국어 동사 658개를 대상으로 semantic network을 구축한 결과, SENKOV는 44개의 top node를 가지고 있으며 depth 는 약 2.35이었다. 한국어 동사의 semantic network은 영어에서와 마찬가지로 명사보다 top node의 개수가 많고 depth가 훨씬 더 얕았다. 그리고 성상부사의 selectional restriction에 유효한 개념분류를 하는데 SENKOV를 활용하였다.

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Comparison in Restriction Profile Analysis of Vibrio furnissi, Vibrio fluvialis, and Vibrio parahaemolyicus Bacteriophage from Sea Product

  • Younghee Kim
    • Journal of Environmental Science International
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    • v.1 no.2
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    • pp.99-103
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    • 1992
  • The bacteriophages lytic for Vibrio furnissi, Vibrio furniulis and Vibrio parahemolyticus were isolated from fish gills and shellfish. Nucleic acid of bacteriophage was prepared and restriction endonuclease profile was compared. All isolates contained deoxyribonucleic acid. V. fumissi bacteriophage from fish gills showed 2 bands with Bgl II, 1 with Pst, 3 with Hind III, 1 with Bm HI and 2 with EcoR I. V Puuialis phage represented 7 fragments with Bgl II, 1 with Pst, 4 with Hind III, and 2 with EcoR I. V parhemolyticn produced 13 sites with Hind III and 4 sites with EcoR I. The fragment types were varied depending on the phage isolation. All three phages were digested with Hind III and EcoR I with different sizes. V furnissi phage were digested with 5 different restriction enzymes. Key words: Bacteriophage, Vibrio furnissi, Vibrio fluvialis, Vibrio pnrahemolyticus, Deoxyribonucleic acid, Pst, Bam HI, Hind III, EcoR I, Bgl II.

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Detection of Soybean Mosaic Virus Using RT-PCR

  • Kim, Yul-Ho;Kim, Ok-Sun;Lee, Bong-Choon;Roh, Jae-Hwan;Kim, Myoung-Ki;Im, Dae-Joon;Hur, Il-Bong;Lee, Sang-Chul
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.44 no.3
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    • pp.253-255
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    • 1999
  • Reverse transcription and polymerase chain reaction (RT-PCR) assay was used to detect SMV strains. A pair of oligonucleotide primers were designed to include the cylindrical inclusion (CI) coding region between 4,176 to 5,560 nt. Amplification from the total RNA extracted from infected plants with SMV yielded a 1,385 bp DNA fragment. RT-PCR was shown to be $10^3$ times more sensitive than the ELISA assay and it could detect a virus in $10^{-6}$ dilution. Restriction enzyme analysis of RT- PCR products using EcoR I showed that SMV isolates were classified into six groups according to the patterns of restriction fragments.

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Identification of Korean Suminoe Oyster (Crassostrea ariakensis) by RFLP Analysis

  • Kim, Mi-Jung;Park, Jung-Youn;Allen, Stanish K.;An, Hye-Suck
    • Fisheries and Aquatic Sciences
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    • v.11 no.1
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    • pp.32-35
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    • 2008
  • The Suminoe oyster, Crassostrea ariakensis, occurs in estuaries where rivers meet seawater. In Korea, it is one of the most popular fisheries resources in the Nam River and Sumjin River. However, the genetic identification of this species has been questioned, because specimens are often mis-identified as other species. To identify the species, we conducted polymerase chain reaction (PCR) amplification of the internal transcribed spacer-1 (ITS-1) region, followed by digestion with the restriction enzyme HaeIII. Restriction profiles for oysters collected from Korea, Japan, and China (north and south) were determined by comparing the PCR-restriction fragment length polymorphism (RFLP) patterns of the ITS-1 regions. Our study verified that the oysters collected from Korea were C. ariakensis based on the PCR-RFLP patterns. These results emphasize the value of molecular markers for identifying morphologically uncertain species.

Comparison in Restriction Profile Analysis of Vibrio furnissi, Vibrio fluvialis, and Vibrio parahaemolyticus Bacteriophage from Sea Product

  • Kim, Young-Hee
    • Environmental Sciences Bulletin of The Korean Environmental Sciences Society
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    • v.1 no.2
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    • pp.99-103
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    • 1997
  • The bacteriophages lytic for Vibrio furnissi, Vibrio fluvialis and Vibrio parahaemolyticus were isolated from fish gills and shellfish. Nucleic acid of bacteriophages was prepared and restriction endonuclease profile was compared. All isolates contained deoxyribonucleic acid. V. furnissi bacteriophage from fish gills showed 2 bands with Bgl II, 1 with Pst, 3 with Hind III, I with Bam HI and 2 with EcoR 1. V fluvialis phage represented 7 fragments with Bgl II, 1 with Pst, 4 with Hind III, and 2 with EcoR 1. V. parahamolyticus produced 13 sites with Hind III and 4 sites with EcoR 1. The fragment types were varied depending on the phage isolation. All three phages were digested with Hind III and EcoR I with different sizes. V. furnissi phage were digested with 5 different restriction enzymes.

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Study on the Heterogeneous Fleet Vehicle Routing Problem with Customer Restriction (고객 제한조건이 있는 복수 차량유형의 차량할당 및 경로선정에 관한 연구)

  • Lee, Sang-Heon;Lee, Jung-Man
    • Journal of Korean Institute of Industrial Engineers
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    • v.31 no.3
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    • pp.228-239
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    • 2005
  • In this paper, we propose a new conceptual HVRPCR(Heterogeneous Fleet Vehicle Routing Problem with Customer Restriction) model including additional restrictions that are consisted of loadage limit and possible visit number of demand post in HVRP. We propose HVRPCR algorithm using the heuristic in order to solve speedily because VRP is NP-Hard and need many solution time. The proposed model is simulated with changing demand post location, demand weight, loading and possible visit number limitation. Results of the computational experiment are provided along with some analysis like travel cost reduction rate.

Determinants of the Utilization of Oriental Medical Services by the Elderly (한방의료 이용현황 및 이용결정요인에 관한 연구 - 고령화 패널을 이용하여 -)

  • Park, Ji-Eun;Kwon, Soon-Man
    • The Journal of Korean Medicine
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    • v.32 no.1
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    • pp.97-108
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    • 2011
  • Objective: This study aimed to analyze the utilization of Oriental medical services and its determinants among the elderly. Method: Data from a Korean longitudinal study of aging was used. Regression analysis was used to find the determinants of the utilization of medical care. Results: People with low education and low income were more likely to use Oriental medical services. Determinants of using Oriental health service were sex, marriage, income, subjective health condition, activity restriction due to pain, and chronic disease. Among them, only subjective health condition and activity restriction due to pain were significant determinants of frequency of and expenditure on Oriental medical services. Especially, activity restriction due to pain was a significant factor in the use of Oriental medical services, but not in the use of Western medical services. Conclusion: Treatment related to pain was closely associated with Oriental medical services. These treatments need to be developed with scientific and clinical evidence.

Transcriptional Response According to Strength of Calorie Restriction in Saccharomyces cerevisiae

  • Lee, Yae-Lim;Lee, Cheol-Koo
    • Molecules and Cells
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    • v.26 no.3
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    • pp.299-307
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    • 2008
  • To characterize gene expression that is dependent on the strength of calorie restriction (CR), we obtained transcriptome at different levels of glucose, which is a major energy and carbon source for budding yeast. To faithfully mimic mammalian CR in yeast culture, we reconstituted and grew seeding yeast cells in fresh 2% YPD media before inoculating into 2%, 1%, 0.5% and 0.25% YPD media to reflect different CR strengths. We collected and characterized 160 genes that responded to CR strength based on the rigorous statistical analyses of multiple test corrected ANOVA (adjusted p value < 0.1 or raw p value < 0.0031) and Pearson correlation (|r| > 0.7). Based on the individual gene studies and the GO Term Finder analysis of 160 genes, we found that CR dose-dependently and gradually increased mitochondrial function at the transcriptional level. Therefore, we suggest these 160 genes are markers that respond to CR strength and that might be useful in elucidating CR mechanisms, especially how stronger CR extends life span more.

Phylogenetic Relationship of Ganoderma Species with the Polyporaceae Based on RFLP Analysis of the Nuclear ITS Region

  • Park, Hong Je;Shin, Kee Sun;Lee, Dong Hun;Bae, Kyung Sook
    • Journal of Microbiology
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    • v.34 no.2
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    • pp.117-123
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    • 1996
  • Restriction-polymorphic patterns of nuclear-ITS were examined for the genetic relationships among 12 bisidiomycetous mushrooms to Aphyllophorales and Agaricales. The taxonomic affinity of Ganoderma species with the family Polyporaceae also was examined. With 13 restriction endonucleases, 159 restriction characters were generated form the 12 species examined. UPGMA and neighbor-joining analyses separated the 12 species into two genetically distinct groups that correspond to orders (Agaricales and Aphyllophorales) where each species is included. This result indicates that there is clear genetic demarcation between Agaricales and Aphyllophorales. Dendrograms constructed by several data analyses showed that even though Ganoderma species are somewhat in intermediate taxonomic position between the Polyporaceae and families of the Agaricales, they are genetically more related to the Polyporaceae. These results are consistent with morphological characters observed in those mushrooms. However, it is premature to conclude taxonomic status Ganoderma species in the present study employing small sample size.

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First Molecular Characterization of Hypoderma actaeon in Cattle and Red Deer (Cervus elaphus) in Portugal

  • Ahmed, Haroon;Sousa, Sergio Ramalho;Simsek, Sami;Anastacio, Sofia;Kilinc, Seyma Gunyakti
    • Parasites, Hosts and Diseases
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    • v.55 no.6
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    • pp.653-658
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    • 2017
  • Hypoderma spp. larvae cause subcutaneous myiasis in several animal species. The objective of the present investigation was to identify and characterize morphologically and molecularly the larvae of Hypoderma spp. collected from cattle (Bos taurus taurus) and red deer (Cervus elaphus) in the district of Castelo Branco, Portugal. For this purpose, a total of 8 larvae were collected from cattle (n=2) and red deer (n=6). After morphological identification of Hypoderma spp. larvae, molecular characterization was based on PCR-RFLP and mitochondrial CO1 gene sequence analysis. All larvae were morphologically characterized as the third instar larvae (L3) of H. actaeon. Two restriction enzymes were used for molecular identification of the larvae. TaqI restriction enzyme was not able to cut H. actaeon. However, MboII restriction enzyme differentiated Hypoderma species showing 210 and 450 bp bands in H. actaeon. Furthermore, according to the alignment of the mt-CO1 gene sequences of Hypoderma species and to PCR-RFLP findings, all the identified Hypoderma larvae were confirmed as H. actaeon. This is the first report of identification of Hypoderma spp. (Diptera; Oestridae) from cattle and red deer in Portugal, based on morphological and molecular analyses.