• Title/Summary/Keyword: restriction analysis

Search Result 1,304, Processing Time 0.03 seconds

A Study of Genomic Clonal Types of Porphyromonas endodontalis and Prevotella intermedia Isolated from Infected Root Canals with Restriction Endonuclease Analysis (감염근관에서 분리한 Porphyromonas endodontalis와 Prevotella intermedia의 제한효소분석법에 의한 유전자 이질성에 관한 연구)

  • Shin, Joo-Hee;Kim, Han-Wook;Yoon, Soo-Han
    • Restorative Dentistry and Endodontics
    • /
    • v.22 no.1
    • /
    • pp.413-427
    • /
    • 1997
  • Porphyromonas endodontalis and Prevotella intermedia are black-pigmented anaerobic gram negative rods which have been isolated from infected root canals and submucous abscesses of endodontic origin. And they are associated with clinical symptoms such as pain, percussion, and foul odor. It has been reported that there are 3 serotypes according to capsule membrane in P. endodontalis and 2 DNA homology groups and 3 serotypes in P. intermedia, but there is no data available regarding genetic diversity for the species P. endodontalis and P. intermedia. The purpose of this study is to investigate genetic diversities between individual strains of P. endodontalis and P. intermedia which are indistinguishable by serotyping and biotyping using bacterial DNA restriction endonuclease analysis. 45 teeth with at least one clinical symptoms, with single canal, and with pulp necrosis were sampled. For sampling bacteria, access cavity was prepared after disinfecting tooth and its surroundings. Then the paper point was inserted to the apex of the canal, leave there for 15 seconds, and finally it was placed into PRAS Ringer's solution and PBS solution. P. endodontalis and P. intermedia were identified by biochemical test and IIF after subculturing black and brown colonies which were produced after 7 days of incubation on BAP in anaerobic chamber. P. endodontalis and P. intermedia strains were grown in BHI broth and whole genomic DNA was extracted by phenol-chloroform extraction technique and digested by restriction endonuclease, Eco RI and Pst I. The resulting DNA fragments were separated by agarose gel electrophoresis, stained with EtBr and photographed under UV light. The results were as follows : 1. In both P. endodontalis and P. intermedia, different serotypes could be found within a root canal of same patient. 2. There were obvious genetic heterogeneity within a patient and within a serotype in both P. endodontalis and P. intermedia. 3. P. endodontalis serotype c, isolated from different patients, exhibited limited genotypic diversity.

  • PDF

Nutritional studies on the menu contained 70% polished rice and dietary restriction (칠분도미(七分搗米)를 주식(主食)으로 한 한국인식단(韓國人食單)과 식량제한(食量制限)에 관(關)한 영양학적(營養學的) 연구(硏究))

  • Yoo, Young-Sang
    • Journal of Nutrition and Health
    • /
    • v.9 no.2
    • /
    • pp.40-53
    • /
    • 1976
  • This study was designed to comparse the metabolic effects of Korean diet pattern which contained all-polished rice and 70% polished rice, and to compare dietary restriction. The results were as follows. 1. Food intake survey to catch the Korean diet pattern The calory intake showed women took much more than men and farm village was higher than city, However, protein intake showed men were higher than women and decrease gradually from city, fishing village, and farm village. Calcium intake showed Seoul was the first rank of all, but was merely 70% of recommended quantities. Fe intake was greatly short especially in women and vitamin C also showed same situation. In the view of food group intake, grains and potatoes were 70.06%, vegetables and fruits 13.05%, meats fishes and beans 11.99%, respectivelly. Oil and fat intake showed lowest percentage as 0.77%. 2. Nutritional experiments albino rats have been fed for 7 weeks with three different diet: all-polished rice diet, 70% polished rice diet, and the standard diet for contral group. Dietary restriction were at 4 levels: 5% , 10%, 15%, 20% in 70% polished rice det. Body weight of 70% polished rice group gained value compare to all polished rice group. In the final organ weight all-polished rice group and 70% polished rice group and 70% polished rice group revealed similar results, but organ weight almost decreased dued to dietary restriction and statistical data showed significant differences between dietary restriction group and none-restriction group. In the femur length, 70% polished rice group was longer than all polished rice group but there was no significant differences. The nitrogen content of liver and muscle of 70% polished rice group was higher than all-polished rice group. Furthermone there was significant differences in the female (P<0.1). In the 10% restriction group(female) and 15% restriction group(male), nitrogen retention was higher than 0% restriction group. The other biochemical analysis such as liver lipid, serum cholesterol, glucose of urine, feces and serum were not revealed any significant differences. As a result of studying, it seems clear that 70% polished rice intake influenced much nourshment to white rat growth than all-porished rice intake, and there is no significant influence to animal growth and metabolic effect even if it was restricted $5{\sim}10%$ of diet.

  • PDF

Differentiation of Vibrio spp. including Core Group Species by PCR-RFLP (PCR-RFLP에 의한 Vibrio core group을 포함한 Vibrio 종의 구분)

  • Park, Jin-Sook
    • Journal of Life Science
    • /
    • v.22 no.2
    • /
    • pp.245-250
    • /
    • 2012
  • The 16S rDNA - RFLP types for six Vibrio species (V. fluvialis, V. proteolyticus, V. vulnificus, V. mimicus) including two core group members, V. alginolyticus and V. parahaemolyticu s, and Grimontia (Vibrio) hollisae were determined using PCR-RFLP analysis. Six tetrameric restriction enzymes (Alu I, Cfo I, Dde I, Hae III, Msp I, and Rsa I) were selected for RFLP analysis. V. alginolyticus, V. parahaemolyticus, and V. proteolyticus showed the same RFLP pattern following digestion with four of the six used restriction enzymes: CfoI, DdeI, MspI, and RsaI. Various restriction enzyme combinations generated digests recognizable as distinct RFLP types for each of the assayed Vibrio species. In particular, AluI single digestion produced species specific band patterns that enabled the differentiation between these Vibrio species. Dendrogram based on restriction patterns showed that two Vibrio core group members, V. alginolyticus and V. parahaemolyticus were closely related having a similarity over 90%. Although the observed RFLP pattern for Grimontia hollisae shared several common bands with other Vibrio spp., G. hollisae results were still clearly distinct from Vibrio spp. RFLP types for all restriction enzymes tested. If restriction enzymes are aptly selected, PCR-RFLP analysis is still a rapid and effective tool for differentiating Vibrio species.

Analysis on Leisure ViewPoint of Immigrant Female of Multi-Cultural Families (다문화가정 이주여성의 여가관 분석)

  • Yun, Min-Sook;Lee, Jeng-Heun;Kim, Jeong-Ryeon
    • The Journal of the Korea Contents Association
    • /
    • v.11 no.6
    • /
    • pp.337-349
    • /
    • 2011
  • The purpose of this research is to elucidate the analysis on leisure viewpoint of immigrant female of multi-cultural families. This survey research have been performed with 140 of immigrant females who participate to the program of multi-cultural families support center located in Kyungki-do, Taejeon city, Chungnam-do and Chungbuk-do in 2010 by purposive sampling method. The final analysis was obtained from the survey results of total 89 immigrant females and the credibility of this survey represented Cronbach's ${\alpha}$ value above .613. The apparent results were the follows: First, the major leisure time of immigrant females of multi-cultural families on week days as well as weekend represented to be 1~2 hours. Second, the satisfaction on leisure activity of immigrant females was average level. Third, the best preference as leisure activity was travel. Fourth, their husbands were the favor partner for leisure activity of immigrant females. Fifth, the restriction on leisure activity of immigrant females showed some differences based on age, academic background, nationality and residence period. That is, personal restriction of age was below 25 years old, the highest personal and relative restriction of academic background represented in immigrant females below middle school graduator. Furthemore, the structural restriction and personal restriction on nationality showed the highest in the china and phillippine females, relatively. Personal restriction on residence period was mainly represented in immigrant females residing during 2.1~4 years.

Potential Applications of Recombinant DNA Probes for Relatedness Analysis of Fusarium oxysporum (Fuarium oxysporum의 유연관계 분석을 위한 Recombinant DNA의 Probe로서의 이용 가능성)

  • 김홍기;김영태;유승헌
    • Korean Journal Plant Pathology
    • /
    • v.10 no.1
    • /
    • pp.1-6
    • /
    • 1994
  • Randomly chosen recombinant clones of Fusarium oxysporum were analysed to select useful probes for relatedness analysis of Fusarium oxysporum. Genomic DNA of F. oxysproum f. sp. cubense, digested with HindIII, was ligated to pUC118 and used to transform Escherichia coli strai DH5$\alpha$. Three clones were identified that hybridized to mutiple restriction fragments of some formae speciales of F. oxysporum. These probes detected repetitive sequences in HindIII or EcoRI digested DNAs. Repeated copy clone pFC46, pFC52 and pFC54 showed evident polymorphisms among ten formae speciales of this fungus. Since clone pFC 52 strongly hybridized to multiple EcoRI-digested restriction fragments of f. sp. cubense, it may be useful as a probe for analysis of other genetic characteristics of this forma specialis. The results suggest that our clones might be very useful as probes for relatedness analysis between or within formae speciales of Fusarium oxysporum.

  • PDF

A Study on the Support and Restriction Factors of Children's Play Spaces in Housing Complex - Based on the Perception of Primary School Students - (주거단지 내 아동 놀이장소의 지원 및 제약 요인에 관한 연구 - 초등학생의 인식을 기반으로 -)

  • Park, Jin-Hee;Lee, Sang-Ho
    • Journal of the Korean housing association
    • /
    • v.27 no.1
    • /
    • pp.41-50
    • /
    • 2016
  • This study aims to draw the factors of support and restriction as children play in the outdoor space through their participation. The 135 students (fifth- and sixth- graders) participated in the research using the mapping method included the daily diagram and the open-ended questionnaire. As the research results, the park, the school yard, the playground and the rest space were emerged as play spaces with high utilization rate. Through the analysis of play spaces based on children's perception, the physical and social-psychological factors are drawn as the factors of support and restriction. Some physical factors such as the location are relevant to social-psychological factors such as the friend and the danger. In conclusion, the physical factors which support or restrict children's activities have to be considered with the socialpsychological factors. And the result from children's experience and perception should be basis of providing appropriate spaces for children who are actual users of play spaces.

Survey of Bedrock Quality and Suitable Site for Crushed Stones using GIS in the Wondeung Area (GIS를 이용한 원등일대의 기반암품질과 골재개발적지 분석)

  • Lee, Jin-Young;Yang, Dong-Yun;Kim, Ju-Yong;Hong, Sei-Sun;Yun, Hyun-Soo
    • Journal of Korean Society for Geospatial Information Science
    • /
    • v.13 no.4 s.34
    • /
    • pp.47-58
    • /
    • 2005
  • Investigation of bedrock quality and the legal restriction for developing the aggregate resources were carried out with GIS in the Wondeung area Gokseong-gun, Jeollanam-do province. Firstly, we surveyed the exposed bedrocks in the field and examined in physical properties in the lab. Secondly we analyzed the legal restriction by using GIS based on bufferzone and viewshed analysis. At the results of this study, the area can be used totally as the crushed stones. However the suitability sites of crushed stone have various regulations. So the legal restriction is the principal standard to develop the crushed stone in the Wondeung area. Suitable site for crushed stones are about 30% in the Wondeung area.

  • PDF

Authentication of Salted-dried Fish Species Using Polymerase Chain Reaction-Single Strand Conformational Polymorphism and Restriction Analysis of Mitochondrial DNA

  • Kim, Joo-Shin;Chu, Kin Kan Astley;Kwan, Hoi Shan;Chung, Hau Yin
    • Fisheries and Aquatic Sciences
    • /
    • v.11 no.3
    • /
    • pp.133-139
    • /
    • 2008
  • Molecular techniques, including restriction fragment length polymorphism(RFLP) and polymerase chain reaction-single strand conformational polymorph isms(PCR-SSCP), were developed to identify salted, dried threadfin(Eleutheronema tetradactylum) and white herring(Ilisha elongata) fish. Using PCR with universal primers, conserved 367-bp fragments of the cytochrome b gene were amplified from fresh fish samples and sequenced. The sequences were then searched for specific restriction sites. The digestion of the PCR products with the endonucleases AvaI, FokI, MboII, and MspI generated RFLP, which was used to identify the commercial products. Similarly, the amplified PCR-SSCP products were developed and the products tested. Overall, similar patterns were found in the majority of the fresh and processed products. Based on the results, both RFLP and PCR-SSCP were useful in determining and validating the authenticity of the fish species used to prepare the commercial salted, dried products. A similar approach can be applied to other species.

Characterization of infectious bursal disease viruses isolated in Korea using RT/PCR and RFLP analysis (RT/PCR과 RFLP 분석에 의한 Infectious bursal disease virus(국내분리주)의 특성 규명)

  • Kwon, Hyuk-moo;Kim, Dae-kyu;Seong, Hwan-woo
    • Korean Journal of Veterinary Research
    • /
    • v.39 no.1
    • /
    • pp.104-110
    • /
    • 1999
  • Field infectious bursal disease viruses (IBDVs) were isolated from IBDV-suspected commercial chickens. The variable region in VP2 gene of six Korean IBDV isolates (K-IBDVs) and IBD vaccines was examined using the reverse transcriptase / polymerase chain reaction-restriction fragment length polymorphism (RT/PCR-RFLP) assay. With all K-IBDVs and vaccine IBDVs, a 474-bp fragment of the VP2 gene was amplified and tested with various restriction enzymes. Restriction enzymes BstNI and StyI differentiated K-IBDV isolates and IBD vaccines into four groups. Restriction enzyme profiles of K-IBDV isolates were different from them of IBD vaccines. K-IBDV isolates except for 310 isolate had specific SspI and TaqI recognition sites, which were recognized in highly virulent IBDVs, but IBD vaccines had no those sites. This study showed that RT/PCR-RFLP assay was thought to be valuable tool for differentiation of IBDVs and identification of highly virulent IBDV.

  • PDF

EMS Rules for Balanced Factorial Designs under No Restriction on Interaction

  • Choi Byoung-Chul
    • Communications for Statistical Applications and Methods
    • /
    • v.12 no.1
    • /
    • pp.47-59
    • /
    • 2005
  • Expected mean square(EMS) is an important part of conducting the analysis of variance in the experimental design problem, especially in mixed or random models. We present a set of EMS rules for balanced factorial designs under no restriction on interaction. Also we point out how to use the variance component of SPSS or SAS procedure to obtain EMS.