• 제목/요약/키워드: relative abundance

검색결과 466건 처리시간 0.031초

An Advanced Understanding of Uterine Microbial Ecology Associated with Metritis in Dairy Cows

  • Jeon, Soo Jin;Galvao, Klibs N.
    • Genomics & Informatics
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    • 제16권4호
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    • pp.21.1-21.7
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    • 2018
  • Metritis, the inflammation of the uterus caused by polymicrobial infections, is a prevalent and costly disease to the dairy industry as it decreases milk yield, survival, and the welfare of dairy cows. Although affected cows are treated with broad-spectrum antibiotics such as ceftiofur, endometrial and ovarian function are not fully recovered, which results in subfertility and infertility. According to culture-dependent studies, uterine pathogens include Escherichia coli, Trueperella pyogenes, Fusobacterium necrophorum, and Prevotella melaninogenica. Recent studies using high-throughput sequencing observed very low relative abundance of Escherichia coli, Trueperella pyogenes, and Prevotella melaninogenica in cows with metritis. Herein, we propose that metritis is associated with a dysbiosis of the uterine microbiota, which is characterized by high abundance of Bacteroides, Porphyromonas, and Fusobacterium.

The Interaction Between Accretion from the Interstellar Medium and Accretion from the Evolved Binary Component in Barium Stars

  • Jeong, Yeuncheol;Yushchenko, Alexander V.;Doikov, Dmytry N.
    • Journal of Astronomy and Space Sciences
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    • 제35권1호
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    • pp.1-6
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    • 2018
  • The reanalysis of the previously published abundance pattern of mild barium star HD202109 (${\zeta}$ Cyg) and the chemical compositions of 129 thin disk barium stars facilitated the search for possible correlations of different stellar parameters with second ionization potentials of chemical elements. Results show that three valuable correlations exist in the atmospheres of barium stars. The first is the relationship between relative abundances and second ionization potentials. The second is the age dependence of mean correlation coefficients of relative abundances vs. second ionization potentials, and the third one is the changes in correlation coefficients of relative abundances vs. second ionization potentials as a function of stellar spatial velocities and overabundances of s-process elements. These findings demonstrate the possibility of hydrogen and helium accretion from the interstellar medium on the atmospheres of barium stars.

EVALUATION OF MICROBIAL RISK IN SOIL AMENDED WITH ORGANIC FERTILIZERS FROM STABILIZED SWINE MANURE WASTE

  • Han, Il;Lee, Young-Shin;Park, Joon-Hong
    • Environmental Engineering Research
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    • 제12권4호
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    • pp.129-135
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    • 2007
  • This study evaluated microbial risk that could develop within soil microbial communities after amended with organic fertilizers from stabilized swine manure waste. For this purpose, we assessed the occurrences and competitiveness of antibiotic resistance and pathogenicity in soil microbial communities that were amended with swine manure wastes stabilized by a traditional lagoon fermentation process and an autothermal thermophilic aerobic digestion process, respectively. According to laboratory cultivation detection analysis, soil applications of the stabilized organic fertilizers resulted in increases in absolute abundances of antibiotic resistant bacteria and of two tested pathogenic bacteria indicators. The increase in occurrences might be due to the overall growth of microbial communities by the supplement of nutrients from the fertilizers. Meanwhile, the soil applications were found to reduce competitiveness for various types of antibiotic resistant bacteria in the soil microbial communities, as indicated by the decrease in relative abundances (of total viable heterotrophic bacteria). However, competitiveness of pathogens in response to the fertilization was pathogens-specific, since the relative abundance of Staphylococcus was decreased by the soil applications, while the relative abundance of Salmonella was increased. Further testes revealed that no MAR (multiple antibiotic resistance) occurrence was detected among cultivated pathogen colonies. These findings suggest that microbial risk in the soil amended with the fertilizers may not be critical to public health. However, because of the increased occurrences of antibiotic resistance and pathogenicity resulted from the overall microbial growth by the nutrient supply from the fertilizers, potential microbial risk could not be completely ruled out in the organic-fertilized soil samples.

GC/MS를 이용한 선박연료유에 대한 초음파조사 효과 분석 (Effect of Ultrasonic Irradiation on On-board Fuel Analyzed Using Gas Chromatography/Mass Spectrometry)

  • 최정식
    • 해양환경안전학회지
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    • 제27권6호
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    • pp.890-897
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    • 2021
  • 최근 선박용 연료유에 대한 황 함유량 규제를 준수하기 위해 저유황유의 수요가 증가하고 있다. 그러나 저유황유를 공급하는 시기, 지역, 회사 별로 그 품질이 상이함에 따라 선내 연료유 저장탱크에서는 과도한 슬러지가 발생하는 등 혼합 안정성에 대한 문제가 제기되고 있다. 따라서 본 연구는 초음파의 캐비테이션 현상을 이용하여 저유황유의 품질 향상을 하고자 하였다. 선내 저장 탱크에서 이종의 연료유가 혼합되는 상황을 모사하기 위해 두 가지 종류의 저유황유(황 함유량 0.5 % 이하 MGO, MDO)를 혼합하여 시료유로 사용하였다. 원료유와 50 wt.% 씩 혼합한 시료유를 120분 동안 초음파 처리하였으며, 40분 주기로 채취된 샘플은 GC/MS 분석을 수행하여 초음파 조사 시간에 따른 시료유의 조성 변화를 분석하였다. 연구결과, 초음파의 캐비테이션 효과로 인하여 화학결합이 깨지면서 MGO 내 존재하는 고분자량 화합물의 감소와 저분자량의 화합물 증가가 관찰되었다. MDO와 혼합유의 경우, 초음파 조사 후 저분자 화합물에 대한 상대 존재비의 부분적 증가가 관찰되었지만 시간과 상대 존재비 사이의 상관관계는 관찰되지 않았다.

유기재배와 관행재배 사과원 내 지표 배회성 절지동물 군집에 대한 잡초 관리의 영향 (Influence of Weed Management Practices on Ground-dwelling Arthropod Assemblages in Organic and Conventional Apple Orchards)

  • 김지원;정철의
    • 한국응용곤충학회지
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    • 제60권1호
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    • pp.105-114
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    • 2021
  • 초식, 포식, 분해 등 생태학적 서비스를 제공하는 지표 배회성 절지동물은 사과원의 중요한 구성 요소이며, 이들의 군집에 영향을 미치는 잡초는 유기재배와 관행재배 사과원에서 다르게 관리된다. 잡초 관리와 관련된 과수원 관리가 지표 배회성 절지동물의 풍부도와 다양도에 미치는 영향을 평가하기 위해 3년간 연구를 수행하였다. 대부분의 절지동물은 상위분류군과 섭식 기능군으로 분류하였으며, 딱정벌레류는 종 수준으로 분류하였다. 지표 배회성 절지동물의 주요 우점군은 딱정벌레목으로 나타났다. 초식자와 포식자의 풍부도는 유기재배 사과원에서 높은 결과를 보였으며, 딱정벌레류의 풍부도와 다양도 또한 관행재배 과원보다 유기재배 사과원에서 높은 결과를 보였다. 거미목, 딱정벌레목 또는 딱정벌레류의 풍부도는 잡초 관리 빈도와 음의 상관관계를 보였다. 지표 배회성 절지동물은 농업 시스템보다 잡초 관리에 영향을 더 많이 받는 것으로 나타났다.

THEORETICAL STUDY ON OBSERVED COLOR-MAGNITUDE DIAGRAMS

  • Lee, See-Woo
    • 천문학회지
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    • 제12권1호
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    • pp.41-70
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    • 1979
  • From $B\ddot{o}hm$-Vitense's atmospheric model calculations, the relations, [$T_e$, (B-V)] and [B.C, (B-V)] with respect to heavy element abundance were obtained. Using these relations and evolutionary model calculations of Rood, and Sweigart and Gross, analytic expressions for some physical parameters relating to the C-M diagrams of globular clusters were derived, and they were applied to 21 globular clusters with observed transition periods of RR Lyrae variables. More than 20 different parameters were examined for each globular cluster. The derived ranges of some basic parameters are as follows; $Y=0.21{\sim}0.33,\;Z=1.5{\times}10^{-4}{\sim}4.5{\times}10^{-3},\;age,\;t=9.5{\sim}19{\times}10^9$ years, mass for red giants, $m_{RG}=0.74m_{\odot}{\sim}0.91m_{\odot}$, mass for RR Lyrae stars, $m_{RR}=0.59m_{\odot}{\sim}0.75m_{\odot}$, the visual magnitude difference between the turnoff point and the horizontal branch (HB), ${\Delta}V_{to}=3.1{\sim}3.4(<{\Delta}V_{to}>=3.32)$, the color of the blue edge of RR Lyrae gap, $(B-V)_{BE}=0.17{\sim}0.21=(<(B-V)_{BE}>=0.18),\;[\frac{m}{L}]_{RR}=-1.7{\sim}-1.9$, mass difference of $m_{RR}$ relative to $m_{RG},(m_{RG}-m_{RR})/m_{RG}=0.0{\sim}0.39$. It was found that the ranges of derived parameters agree reasonably well with the observed ones and those estimated by others. Some important results obtained herein can be summarized as follows; (i) There are considerable variations in the initial helium abundance and in age of globular clusters. (ii) The radial gradient of heavy element abundance does exist for globular clusters as shown by Janes for field stars and open clusters. (iii) The helium abundance seems to have been increased with age by massive star evolution after a considerable amount (Y>0.2) of helium had been attained by the Big-Bang nucleosynthesis, but there is not seen a radial gradient of helium abundance. (iv) A considerable amount of heavy elements ($Z{\sim}10{-3}$) might have been formed in the inner halo ($r_{GC}$<10 kpc) from the earliest galactic co1lapse, and then the heavy element abundance has been slowly enriched towards the galactic center and disk, establishing the radial gradient of heavy element abundance. (v) The final galactic disk formation might have taken much longer by about a half of the galactic age than the halo formation, supporting a slow, inhomogeneous co1lapse model of Larson. (vi) Of the three principal parameters controlling the morphology of C-M diagrams, it was found that the first parameter is heavy clement abundance, the second age and the third helium abundance. (vii) The globular clusters can be divided into three different groups, AI, BI and CII according to Z, Y an d age as well as Dickens' HB types. BI group clusters of HB types 4 and 5 like M 3 and NGC 7006 are the oldest and have the lowest helium abundance of the three groups. And also they appear in the inner halo. On the other hand, the youngest AI clusters have the highest Z and Y, and appear in the innermost halo region and in the disk. (viii) From the result of the clean separations of the clusters into three groups, a three dimensional classification with three parameters, Z, Y and age is prsented. (ix) The anomalous C-M diagrams can be expalined in terms of the three principal parameters. That is, the anomaly of NGC 362 and NGC 7006 is accounted for by the smaller age of the order of $1{\sim}2{\times}10^9$ years rather than by the helium abundance difference, compared with M 3. (x) The difference in two Oosterhoff types I and II can be explained in terms of the mean mass difference of RR Lyrae variables rather than in terms of the helium abundance difference as suggested by Stobie. The mean mass of the variables in Oosterhoff type I clusters is smaller by $0.074m_{\odot}$ which is exactly consistent with Rood's estimate. Since it was found that the mean mass of RR Lyrae stars increases with decreasing Z, the two Oosterhoff types can be explained substantially by the metal abundance difference; the type II has Z<$3.4{\times}10^{-4}$, and the type I has higher Z than the type II.

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Essential oil mixture on rumen fermentation and microbial community - an in vitro study

  • Kim, Hanbeen;Jung, Eunsang;Lee, Hyo Gun;Kim, Byeongwoo;Cho, Seongkeun;Lee, Seyoung;Kwon, Inhyuk;Seo, Jakyeom
    • Asian-Australasian Journal of Animal Sciences
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    • 제32권6호
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    • pp.808-814
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    • 2019
  • Objective: The objective of this study was to investigate the effects of essential oil mixture (EOM) supplementation on rumen fermentation characteristics and microbial changes in an in vitro. Methods: Three experimental treatments were used: control (CON, no additive), EOM 0.1 (supplementation of 1 g EOM/kg of substrate), and EOM 0.2 (supplementation of 2 g EOM/kg of substrate). An in vitro fermentation experiment was carried out using strained rumen fluid for 12 and 24 h incubation periods. At each time point, in vitro dry matter digestibility (IVDMD), neutral detergent fiber digestibility (IVNDFD), pH, ammonia nitrogen ($NH_3-N$), and volatile fatty acid (VFA) concentrations, and relative microbial diversity were estimated. Results: After 24 h incubation, treatments involving EOM supplementation led to significantly higher IVDMD (treatments and quadratic effect; p = 0.019 and 0.008) and IVNDFD (linear effect; p = 0.068) than did the CON treatment. The EOM 0.2 supplementation group had the highest $NH_3-N$ concentration (treatments; p = 0.032). Both EOM supplementations did not affect total VFA concentration and the proportion of individual VFAs; however, total VFA tended to increase in EOM supplementation groups, after 12 h incubation (linear; p = 0.071). Relative protozoa abundance significantly increased following EOM supplementation (treatments, p<0.001). Selenomonas ruminantium and Ruminococcus albus (treatments; p<0.001 and p = 0.005), abundance was higher in the EOM 0.1 treatment group than in CON. The abundance of Butyrivibrio fibrisolvens, fungi and Ruminococcus flavefaciens (treatments; p<0.001, p<0.001, and p = 0.005) was higher following EOM 0.2 treatment. Conclusion: The addition of newly developed EOM increased IVDMD, IVNDFD, and tended to increase total VFA indicating that it may be used as a feed additive to improve rumen fermentation by modulating rumen microbial communities. Further studies would be required to investigate the detailed metabolic mechanism underlying the effects of EOM supplementation.

Effects of a multi-strain probiotic on growth, health, and fecal bacterial flora of neonatal dairy calves

  • Guo, Yongqing;Li, Zheng;Deng, Ming;Li, Yaokun;Liu, Guangbin;Liu, Dewu;Liu, Qihong;Liu, Qingshen;Sun, Baoli
    • Animal Bioscience
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    • 제35권2호
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    • pp.204-216
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    • 2022
  • Objective: The aim of this study was to investigate the effects of dietary supplementation with a multi-strain probiotic (MSP) product containing of Bifidobacterium animalis, Lactobacillus casei, Streptococcus faecalis, and Bacillus cerevisiae on growth, health, and fecal bacterial composition of dairy calves during the first month of life. Methods: Forty Holstein calves (24 female and 16 male) at 2 d of age were grouped by sex and date of birth then randomly assigned to 1 of 4 treatments: milk replacer supplementation with 0 g (0MSP), 2 g (2MSP), 4 g (4MSP), and 6 g (6MSP) MSP per calf per day. Results: Supplementation of MSP did not result in any significant differences in parameters of body measurements of calves during the 30 d period. As the dosage of MSP increased, the average daily gain (p = 0.025) and total dry matter intake (p = 0.020) of calves showed a linear increase. The fecal consistency index of the 2MSP, 4MSP, and 6MSP group calves were lower than that of the 0MSP group calves (p = 0.003). As the dosage of MSP increased, the concentrations of lactate dehydrogenase (p = 0.068) and aspartate aminotransferase (p = 0.081) in serum tended to decrease, whereas the concentration of total cholesterol increased quadratically (p = 0.021). The relative abundance of Dorea in feces was lower (p = 0.011) in the 2MSP, 4MSP, and 6MSP group calves than that in the 0MSP group calves. The relative abundance of Dorea (p = 0.001), Faecalibacterium (p = 0.050), and Mitsuokella (p = 0.030) decreased linearly, whereas the relative abundance of Prevotella tended to increase linearly as the dosage of MSP increased (p = 0.058). Conclusion: The MSP product can be used to reduce the diarrhea, improve the performance, and alter the composition of the fecal bacteria in neonatal dairy calves under the commercial conditions.

유기농 복합생태 논습지의 토양 미생물 다양성 증진 효과 (Effect of Soil Microbial Diversity in Paddy Wetland under Organic Rice-Fish Mixed Farming System)

  • 한양수;박충배;조정래;박상구;공민재;남홍식;손진관
    • 한국습지학회지
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    • 제24권2호
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    • pp.69-82
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    • 2022
  • 본 연구는 상시 담수 상태의 복합생태 논습지에서 유기농 벼-큰징거미새우 복합생산 조건 시 1) 논습지 토양 화학성 및 세균 군집 특성을 파악하여 토양 화학성과 세균 간의 상관관계를 분석하고, 2) 유기농 벼 단작 토양과 관행 벼 단작 토양의 세균 군집과 비교하여 유기농 복합생태 토양의 미생물 다양성을 비교 분석하는 것이다. 토양 화학성의 경우 유기농 복합생산 운영 기간이 길수록 유효인산과 유기물 함량이 증가한다. 모든 토양 시료에서 문(Phylum) 수준의 세균 분석 결과 9개의 주요 문이 분포되어 있으며, 모든 토양 시료에서 Proteobacteria가 우점하고 있다. 속(Genus) 수준 분셕 결과 37개의 주요 속이 분류되었으며, 벤다이어그램 분석 결과 모든 토양 시료에 존재하는 250개의 OTU가 분류되었고, 유기농 벼재배 토양에 특화된 561개의 OTU가 관찰되었다. 주좌표분석 결과 관행 벼 단작 토양의 세균 군집과 비교하여 유기농 벼 단작 토양과 유기농 복합생태 논습지 토양의 세균 군집 간 유사도가 높은 것으로 나타났다.

Seasonal Changes in the Microbial Communities on Lettuce (Lactuca sativa L.) in Chungcheong-do, South Korea

  • Woojung Lee;Min-Hee Kim;Juyeon Park;You Jin Kim;Eiseul Kim;Eun Jeong Heo;Seung Hwan Kim;Gyungcheon Kim;Hakdong Shin;Soon Han Kim;Hae-Yeong Kim
    • Journal of Microbiology and Biotechnology
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    • 제33권2호
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    • pp.219-227
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    • 2023
  • Lettuce is one of the most consumed vegetables worldwide. However, it has potential risks associated with pathogenic bacterial contamination because it is usually consumed raw. In this study, we investigated the changes in the bacterial community on lettuce (Lactuca sativa L.) in Chungcheong-do, South Korea, and the prevalence of foodborne pathogens on lettuce in different seasons using 16S rRNA gene-based sequencing. Our data revealed that the Shannon diversity index showed the same tendency in term of the number of OTUs, with the index being greatest for summer samples in comparison to other seasons. Moreover, the microbial communities were significantly different between the four seasons. The relative abundance of Actinobacteriota varied according to the season. Family Micrococcaceae was most dominant in all samples except summer, and Rhizobiaceae was predominant in the microbiome of the summer sample. At the genus level, the relative abundance of Bacillus was greatest in spring samples, whereas Pseudomonas was greatest in winter samples. Potential pathogens, such as Staphylococcus and Clostridium, were detected with low relative abundance in all lettuce samples. We also performed metagenome shotgun sequencing analysis on the selected summer and winter samples, which were expected to be contaminated with foodborne pathogens, to support 16S rRNA gene-based sequencing dataset. Moreover, we could detect seasonal biomarkers and microbial association networks of microbiota on lettuce samples. Our results suggest that seasonal characteristics of lettuce microbial communities, which include diverse potential pathogens, can be used as basic data for food safety management to predict and prevent future outbreaks.