• Title/Summary/Keyword: random effects

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Meta-analysis of Associations of the Ezrin Gene with Human Osteosarcoma Response to Chemotherapy and Prognosis

  • Wang, Zhe;He, Mao-Lin;Zhao, Jin-Min;Qing, Hai-Hui;Wu, Yang
    • Asian Pacific Journal of Cancer Prevention
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    • v.14 no.5
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    • pp.2753-2758
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    • 2013
  • Various studies examining the relationship between Ezrin overexpression and response to chemotherapy and clinical outcome in patients with osteosarcoma have yielded inconclusive results. We accordingly conducted a meta-analysis of 7 studies (n = 318 patients) that evaluated the correlation between Ezrin and histologic response to chemotherapy and clinical prognosis (death). Data were synthesized in receiver operating characteristic curves and with fixed-effects and random-effects likelihood ratios and risk ratios. Quantitative synthesis showed that Ezrin is not a prognostic factor for the response to chemotherapy. The positive likelihood ratio was 0.538 (95% confidence interval [95% CI], 0.296- 0.979; random-effects calculation), and the negative likelihood ratio was 2.151 (95% CI, 0.905- 5.114; random-effects calculations). There was some between-study heterogeneity, but no study showed strong discriminating ability. Conversely, Ezrin positive status tended to be associated with a lower 2-year survival (risk ratio, 2.45; 95% CI, 1.26-4.76; random-effects calculation) with some between-study heterogeneity that disappeared when only studies that employed immunohistochemistry were considered (risk ratio, 2.97; 95% CI, 2.01- 4.40; fixed-effects calculation). To conclude, Ezrin is not associated with the histologic response to chemotherapy in patients with osteosarcoma, whereas Ezrin positivity was associated with a lower 2-year survival rate regarding risk of death at 2 years. Expression change of Ezrin is an independent prognostic factor in patients with osteosarcoma.

Modified partial least squares method implementing mixed-effect model

  • Kyunga Kim;Shin-Jae Lee;Soo-Heang Eo;HyungJun Cho;Jae Won Lee
    • Communications for Statistical Applications and Methods
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    • v.30 no.1
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    • pp.65-73
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    • 2023
  • Contemporary biomedical data often involve an ill-posed problem owing to small sample size and large number of multi-collinear variables. Partial least squares (PLS) method could be a plausible alternative to an ill-conditioned ordinary least squares. However, in the case of a PLS model that includes a random-effect, how to deal with a random-effect or mixed effects remains a widely open question worth further investigation. In the present study, we propose a modified multivariate PLS method implementing mixed-effect model (PLSM). The advantage of PLSM is its versatility in handling serial longitudinal data or its ability for taking a randomeffect into account. We conduct simulations to investigate statistical properties of PLSM, and showcase its real clinical application to predict treatment outcome of esthetic surgical procedures of human faces. The proposed PLSM seemed to be particularly beneficial 1) when random-effect is conspicuous; 2) the number of predictors is relatively large compared to the sample size; 3) the multicollinearity is weak or moderate; and/or 4) the random error is considerable.

Desired earthquake rail irregularity considering random pier height and random span number

  • Jian Yu;Lizhong Jiang;Wangbao Zhou
    • Structural Engineering and Mechanics
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    • v.90 no.1
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    • pp.41-49
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    • 2024
  • In recent years, China's high-speed railway (HSR) line continues to expand into seismically active regions. Analyzing the features of earthquake rail irregularity is crucial in this situation. This study first established and experimentally validated a finite element (FE) model of bridge-track. The FE model was then combined with earthquake record database to generate the earthquake rail irregularity library. The sample library was used to construct a model of desired earthquake rail irregularity based on signal processing (SFT) and hypothesis principle. Finally, the effects of random pier height and random span number on desired irregularity were analyzed. Herein, an equivalent method of calculating earthquake rail irregularities for random structures was proposed. The results of this study show that the amplitude of desired irregularity is found to increase with increasing pier height. When calculating the desired irregularity of a structure with unequal pier heights, the structure can be regarded as that with equal pier heights (taking the largest pier height). For a structure with the span number large than 9, its desired irregularity can be considered equal to that of a 9-span structure. For the structures with both random pier heights and random span number, their desired irregularities are obtained by equivalent calculations for pier height and span number, respectively.

Confidence Interval for the Variance Component in a Unbalanced One-way Random Effects Model

  • Song, Gyu-Moon
    • Journal of the Korean Data and Information Science Society
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    • v.13 no.2
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    • pp.329-340
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    • 2002
  • Two methods are proposed for constructing a confidence interval on the among group variance component in a unbalanced one-way random effects model. Computer simulation is used to compare these methods with alternative procedures. The results indicate that the method1 and methods2 perform well over small group size and large sample size respectively.

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Hierarchical Bayes Analysis of Longitudinal Poisson Count Data

  • Kim, Dal-Ho;Shin, Im-Hee;Choi, In-Sun
    • Journal of the Korean Data and Information Science Society
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    • v.13 no.2
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    • pp.227-234
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    • 2002
  • In this paper, we consider hierarchical Bayes generalized linear models for the analysis of longitudinal count data. Specifically we introduce the hierarchical Bayes random effects models. We discuss implementation of the Bayes procedures via Markov chain Monte Carlo (MCMC) integration techniques. The hierarchical Baye method is illustrated with a real dataset and is compared with other statistical methods.

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Heteroscedasticity of Random Effects in Crossover Design

  • Ahn, Chul-H.
    • Proceedings of the Korean Statistical Society Conference
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    • 2002.11a
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    • pp.79-83
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    • 2002
  • A phase III clinical trial of a new drug for neutropenia induced by chemotherapy is presented and consider adding random effects in crossover design which was used in the clinical study. The diagnostics for its heteroscedasticity based on score statistic is derived for detecting homoscedasticity of errors in crossover design. A small simulation study is peformed to investigate the finite sample behaviour of the test statistic which is known to have an asymptotic chi-square distribution under the null hypothesis.

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Outlier Detection in Random Effects Model Using Fractional Bayes Factor

  • Chung, Younshik
    • Communications for Statistical Applications and Methods
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    • v.7 no.1
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    • pp.141-150
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    • 2000
  • In this paper we propose a method of computing Bayes factor to detect an outlier in a random effects model. When no information is available and hence improper noninformative priors should be used Bayes factor includes the unspecified constants and has complicated computational burden. To solve this problem we use the fractional Bayes factor (FBF) of O-Hagan(1995) and the generalized Savage0-Dickey density ratio of Verdinelli and Wasserman (1995) The proposed method is applied to outlier deterction problem We perform a simulation of the proposed approach with a simulated data set including an outlier and also analyze a real data set.

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Random Dopant Fluctuation Effects of Tunneling Field-Effect Transistors (TFETs) (터널링 전계효과 트랜지스터의 불순물 분포 변동 효과)

  • Jang, Jung-Shik;Lee, Hyun Kook;Choi, Woo Young
    • Journal of the Institute of Electronics and Information Engineers
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    • v.49 no.12
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    • pp.179-183
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    • 2012
  • The random dopant fluctuation (RDF) effects of tunneling field-effect transistors (TFETs) have been observed by using atomistic 3-D device simulation. Due to extremely low body doping concentration, the RDF effects of TFETs have not been seriously investigated. However, in this paper, it has been found that the randomly generated and distributed source dopants increase the variation of threshold voltage ($V_{th}$), drain induced current enhancement (DICE) and subthreshold slope (SS) of TFETs. Also, some ways of relieving the RDF effects of TFETs have been presented.

Estimable functions of mixed models (혼합모형의 추정가능함수)

  • Choi, Jaesung
    • The Korean Journal of Applied Statistics
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    • v.29 no.2
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    • pp.291-299
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    • 2016
  • This paper discusses how to establish estimable functions when there are fixed and random effects in design models. It proves that estimable functions of mixed models are not related to random effects. A fitting constants method is used to obtain sums of squares due to random effects and Hartley's synthesis is used to calculate coefficients of variance components. To test about the fixed effects the degrees of freedom associated with divisor are determined by means of the Satterthwaite approximation.

Earthquake Responses of Nuclear Facilities Subjected to Non-vertically Incidental and Incoherent Seismic Waves (비수직 입사 비상관 지진파에 의한 원전 시설물의 지진 응답)

  • Lee, Jin Ho
    • Journal of the Earthquake Engineering Society of Korea
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    • v.26 no.6
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    • pp.237-246
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    • 2022
  • Based on the random-vibration-theory methodology, dynamic responses of nuclear facilities subjected to obliquely incidental and incoherent earthquake ground motions are calculated. The spectral power density functions of the 6-degree-of-freedom motions of a rigid foundation due to the incoherent ground motions are obtained with the local wave scattering and wave passage effects taken into consideration. The spectral power density function for the pseudo-acceleration of equipment installed on a structural floor is derived. The spectral acceleration of the equipment or the in-structure response spectrum is then estimated using the peak factors of random vibration. The approach is applied to nuclear power plant structures installed on half-spaces, and the reduction of high-frequency earthquake responses due to obliquely incident incoherent earthquake ground motions is examined. The influences of local wave scattering and wave passage effects are investigated for three half-spaces with different shear-wave velocities. When the shear-wave velocity is sufficiently large like hard rock, the local wave scattering significantly affects the reduction of the earthquake responses. In the cases of rock or soft rock, the earthquake responses of structures are further affected by the incident angles of seismic waves or the wave passage effects.