• Title/Summary/Keyword: profiling.

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LC-MS/MS Profiling-Based Secondary Metabolite Screening of Myxococcus xanthus

  • Kim, Ji-Young;Choi, Jung-Nam;Kim, Pil;Sok, Dai-Eun;Nam, Soo-Wan;Lee, Choong-Hwan
    • Journal of Microbiology and Biotechnology
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    • v.19 no.1
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    • pp.51-54
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    • 2009
  • Myxobacteria, Gram-negative soil bacteria, are a well-known producer of bioactive secondary metabolites. Therefore, this study presents a methodological approach for the high-throughput screening of secondary metabolites from 4 wild-type Myxococcus xanthus strains. First, electrospray ionization mass spectrometry (ESI-MS) was performed using extracellular crude extracts. As a result, 22 metabolite peaks were detected, and the metabolite profiling was then conducted using the m/z value, retention time, and MS/MS fragmentation pattern analyses. Among the peaks, one unknown compound peak was identified as analogous to the myxalamid A, B, and C series. An analysis of the tandem mass spectrometric fragmentation patterns and HR-MS identified myxalamid K as a new compound derived from M. xanthus. In conclusion, LC-MS/MS-based chemical screening of diverse secondary metabolites would appear to be an effective approach for discovering unknown microbial secondary metabolites.

The measurement and evaluation of local scour at a bridge pier using the profiling scour monitoring system (프로파일링 세굴 모니터링 시스템을 이용한 교각 국부세굴 계측 및 평가)

  • Shin, Jong-Hyun;Park, Hyun-Il;Shin, Seung-Hyun;Park, Kyung-Soo
    • Proceedings of the Korean Geotechical Society Conference
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    • 2009.03a
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    • pp.38-47
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    • 2009
  • Scour means the erosion of bed material by flow change when a bridge is constructed in a stream. Scour is one of the critical factors of a bridge failure. There are several methods for the monitoring of scour near bridge foundations; Sounding rods, Magnetic sliding collar System, Sonar system, underwater camera system and so on. In general, Sonar system is preferred due to its convenience and good accuracy. In this study, the new scour monitoring system was developed using profiling sonar sensor. The new system can measure a line profile of a seabed and has small size due to the effectively designed data logger. The performance of the new scour monitoring system was evaluated at a bridge pier in tidal environment. The measured local scour depths were discussed with the result of the empirical formulas; CSU, Froehlich, Laursen and Neill.

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Normal Behavior Profiling based on Bayesian Network for Anomaly Intrusion Detection (이상 침입 탐지를 위한 베이지안 네트워크 기반의 정상행위 프로파일링)

  • 차병래;박경우;서재현
    • Journal of the Korea Society of Computer and Information
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    • v.8 no.1
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    • pp.103-113
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    • 2003
  • Program Behavior Intrusion Detection Technique analyses system calls that called by daemon program or root authority, constructs profiles. and detectes anomaly intrusions effectively. Anomaly detections using system calls are detected only anomaly processes. But this has a Problem that doesn't detect affected various Part by anomaly processes. To improve this problem, the relation among system calls of processes is represented by bayesian probability values. Application behavior profiling by Bayesian Network supports anomaly intrusion informations . This paper overcomes the Problems of various intrusion detection models we Propose effective intrusion detection technique using Bayesian Networks. we have profiled concisely normal behaviors using behavior context. And this method be able to detect new intrusions or modificated intrusions we had simulation by proposed normal behavior profiling technique using UNM data.

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Impurity Profiling Analysis of Illicit Methamphetamine Seized in Korea (우리나라에서 불법 유통되는 메스암페타민의 불순물 프로화일 분석)

  • Yoo, Young-Chan;Chung, Hee-Sun;Kim, Eun-Mi;Kim, Sun-Cheun;Kim, Seung-Whan
    • YAKHAK HOEJI
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    • v.42 no.6
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    • pp.627-633
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    • 1998
  • Impurity profiling analysis of methamphetamine seized in Korea was investigated for the evidential and intelligent purpose. Samples were extracted with ethylacetate which contai ns internal standard of dioctylsebacate under basic condition and extracts were analyzed by GC-FID. Ephedrine, chloroephedrine & 1,2-dimethyl-3-phenylaziridine were identified impurities in illicit methamphetamine by GC-MS. These impurities revealed that most of abused methamphetamine in Korea were synthesized from ephedrine as a starting material. For the classification of samples. firstly, 24 impurity peaks were selected after inspection of every peak in 50 samples as the specific markers of impurities. Secondly, corresponding peak retention time and area ratio to the internal standard were calculated and database was created with values of 24 peaks by in-house program. Finally, cluster analysis was attempted with the resultant profiles using the STAR plot, which was based on the Euclidian distance for evaluating similarity among samples. A total of 76 samples were divided into 8 different groups within 90% statistical similarity and inter-batch samples showed similar impurity patterns by this procedure. In conclusion, the analysis of impurities is a suitable index for estimation the common or different origin of methamphetamine sample.

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Geoacoustic Modeling for Analysis of Attenuation Characteristics using Chirp Acoustic Profiling data (광역주파수 음향반사자료의 감쇠특성 분석을 위한 지질음향모델링 기법 연구)

  • Chang Jae-Kyeong;Yang Sung-Jin
    • Geophysics and Geophysical Exploration
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    • v.2 no.4
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    • pp.202-208
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    • 1999
  • We introduce a new acoustic parameter for the classification of seafloor sediments from chirp sonar acoustic profiling data. The acoustic parameter is defined as a derivative of the unwrapped phase of the Fourier transform of acoustic profiling data. Consequently, it represents the characteristics of attenuation by dissipative dispersion in sediments. And we estimated acoustic properties by geoacoustic modeling using Chirp data obtained from the different sedimentary facies. Our classification results, when compared with the results of analysis of sampled sediments, show that the acoustic parameter discriminates sedimentary facies and bottom hardness. Thus the method in this paper is expected to be an effective means of geoacoustic modeling of the seafloor.

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Domain Analysis of Reading Research in Korea using Author Profiling (저자 프로파일링 기법을 이용한 국내 독서 연구 영역 분석)

  • Kim, Pan-Jun
    • Journal of the Korean BIBLIA Society for library and Information Science
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    • v.22 no.4
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    • pp.21-44
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    • 2011
  • This study aims to analyze research domains and trends of reading education in Korea and, suggest future research direction of this field. First, In order to identify the overview of research in terms of productivity, A basic analysis was performed based on 1,465 articles of domestic serials(1935~2011). Second, The analysis of intellectual structure using author profiling as a technique of text mining was performed based on 652 papers of domestic journals(2000~2011). Third, Depending on the results of these analysis, this study suggested the directions of future research of the field.

New Lung Cancer Panel for High-Throughput Targeted Resequencing

  • Kim, Eun-Hye;Lee, Sunghoon;Park, Jongsun;Lee, Kyusang;Bhak, Jong;Kim, Byung Chul
    • Genomics & Informatics
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    • v.12 no.2
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    • pp.50-57
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    • 2014
  • We present a new next-generation sequencing-based method to identify somatic mutations of lung cancer. It is a comprehensive mutation profiling protocol to detect somatic mutations in 30 genes found frequently in lung adenocarcinoma. The total length of the target regions is 107 kb, and a capture assay was designed to cover 99% of it. This method exhibited about 97% mean coverage at $30{\times}$ sequencing depth and 42% average specificity when sequencing of more than 3.25 Gb was carried out for the normal sample. We discovered 513 variations from targeted exome sequencing of lung cancer cells, which is 3.9-fold higher than in the normal sample. The variations in cancer cells included previously reported somatic mutations in the COSMIC database, such as variations in TP53, KRAS, and STK11 of sample H-23 and in EGFR of sample H-1650, especially with more than $1,000{\times}$ coverage. Among the somatic mutations, up to 91% of single nucleotide polymorphisms from the two cancer samples were validated by DNA microarray-based genotyping. Our results demonstrated the feasibility of high-throughput mutation profiling with lung adenocarcinoma samples, and the profiling method can be used as a robust and effective protocol for somatic variant screening.

Skin depth profiling by using fiber optic probes in the near infrared

  • Woo, Young-Ah;jung, Suh-Eun;Kim, Hyo-Jin
    • Proceedings of the SCSK Conference
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    • 2003.09b
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    • pp.218-218
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    • 2003
  • Recently we showed the prototype portable device for the determination of human skin moisture by using near infrared spectroscopy. In order to optimize the acquiring condition of NIR spectrum of skin and control the target information of water depending the site such as epidermis and dermis, skin depth profiling was investigated changing the distance between illuminations and receiving of radiation in the terminal of fiber probe. The colleted light information could be controlled by changing the distance of the fiber optic probes. It was confirmed that the longer distance we used, the deeper site from the skin surface we could get information from in this study. Four kinds of probes with distances such as 0.03 mm, 0.1 mm, 0.5 mm, and 1.0 mm were used. In addition, the gap size from 0.3 mm to 3.0 mm was studied to control the intensity of water absorbance effectively and to avoid saturation of water absorption. We also investigated the reference materials depending the reflectance ratio for water absorption not to be saturated because of the strong absorptivity of water. Furthermore, spectroscopic information regarding free water and bound water around 1850 nm was investigated by using the different distance of fiber optic probes. This study would be great help to control the spectroscopic information of water to be measured depending the site where water exists.

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A Comparison Test on the Potential Utility between Author Profiling Analysis(APA) and Author Co-Citation Analysis(ACA) (저자프로파일링분석과 저자동시인용분석의 유용성 비교 검증)

  • Ryoo, Jong-Duk;Choi, Eun-Ju
    • Journal of the Korean Society for information Management
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    • v.28 no.1
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    • pp.123-144
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    • 2011
  • This study compared Author Profiling Analysis(APA) to Author Co-Citation Analysis (ACA). The former is a new analytic technique on the intellectual structure of a science whereas the latter is a traditional analytic technique. The purpose of this study was to propose appropriate methods to analyze intellectual structure of a science in the Korean research environment. In order to achieve the goal, this study adopted APA using Text Mining for analysis on the intellectual structure of a science rather than relying on citation index in order to determine a potential utility of the new analytic technique that can identify the intellectual structure.

A Normal Network Behavior Profiling Method Based on Big Data Analysis Techniques (Hadoop/Hive) (빅데이터 분석 기술(Hadoop/Hive) 기반 네트워크 정상행위 규정 방법)

  • Kim, SungJin;Kim, Kangseok
    • Journal of the Korea Institute of Information Security & Cryptology
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    • v.27 no.5
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    • pp.1117-1127
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    • 2017
  • With the advent of Internet of Things (IoT), the number of devices connected to Internet has rapidly increased, but the security for IoT is still vulnerable. It is difficult to integrate existing security technologies due to generating a large amount of traffic by using different protocols to use various IoT devices according to purposes and to operate in a low power environment. Therefore, in this paper, we propose a normal network behavior profiling method based on big data analysis techniques. The proposed method utilizes a Hadoop/Hive for Big Data analytics and an R for statistical computing. Also we verify the effectiveness of the proposed method through a simulation.