• Journal of Plant Biotechnology
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• v.39 no.1
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• pp.75-80
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• 2012

$Kalopanax$ $pictus$ is a long-lived deciduous perennial tree in the family Araliaceae mainly distributed in the East Asia. In Korea, this species is of ecological and medical importance. Because typical populations of this species are small and distributed in patches, $K.$ $pictus$ has been considered as a narrow habitat species. To understand the genetic diversity and population structure of this species, the sequence variation of the nuclear ribosomal DNA (nrDNA) internal transcribed spacer (ITS) region was analyzed among 18 different $K.$ $pictus$ populations in the present investigation. The nrDNA ITS sequences of Korean populations investigated in this study showed identical of 616 bp in length, and no any nucleotide variation was found in the entire nrDNA ITS region sequence. This result suggested that the $K.$ $pictus$ populations in Korea might belong to the same isolate, and no mutation was found in the nrDNA ITS region. Compared with other known ITS sequence sources from $K.$ $pictus$ populations, only four variable nucleotide sites were found within the entire ITS region. Very narrow genetic diversity appearing in the population level of $K.$ $pictus$ makes us hypothesize that their relatively isolated habitats. The long-lived traits might be one main reason. However, another probability was that the nr-DNA ITS region might be noneffective in classifying populations of $K.$ $pictus$. Thus, to further understand the phylogenetic relationship of $K.$ $pictus$ populations, more samplings should be performed based on more DNA sequences.

• Journal of Advanced Navigation Technology
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• v.18 no.2
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• pp.170-177
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• 2014

Genetic Algorithms are robust search and optimization techniques but have some problems such as premature convergence and convergence to local extremum. As population diversity converges to low value, the search ability decreases and converges to local extremum but population diversity converges to high value, then the search ability increases and converges to global optimum or genetic algorithm may diverge. To guarantee that genetic algorithms converge to the global optima, the genetic operators should be chosen properly. In this paper, we propose the genetic operators with the hybrid function of the average Hamming distance and the fitness value to maintain the diversity of the GA's population for escaping from the premature convergence. Results of simulation studies verified the effects of the mutation operator for maintaining diversity and the other operators for improving convergence properties as well as the feasibility of using proposed genetic operators on convergence properties to avoid premature convergence and convergence to local extremum.

• The Korean Journal of Ecology
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• v.18 no.4
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• pp.471-481
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• 1995

The weed population dynamics as affected by contrasting conventional tillege (CT) and no-tillage (NT) practices with a minimum herbicide application was studied in Athens, Georgia, U.S.A. Common chickweed (Stellaria media) was the most common spring weed while johnsongrass (Sorghum halepense), sicklepod (Cassia obtusifolia), and pigweed (Amaranthus retroflexus) accounted for 89∼97％ of net production during summers of 1983 and 1984. Total weed production in summer of 1984 was 2∼5 times greater than that of 1983. Weed production was greater in NT plots than in CT plots in summer of 1983, but reverse was the case in summer of 1984. In spring, net production in NT plots was greater than that in CT plots, especially, in 1985. Species diversity was consistently higher in NT plots, but in the wet summer of 1984 the pattern was different, with higher diversity in CT plots. Weed species diversity was higher in the spring rye crop than in the summer grain sorghum crop. The larger but less diverse weed populations in summer of 1984 indicated that these populations experienced competitive exclusion. Under the favorable summer moisture conditions the three dominant species grew so vigorously and quickly as to exclude many less common species that were able to survive under the drier conditions in 1983. The three dominant species not only excluded other weeds in 1984 but also greatly reduced crop production. The perennial johnsongrass was equally successful, or even more so, in CT plots as in NT plots. Plowing did not kill johnsongrass rhizomes but tended to break them up, thus increasing the number of individual plants that appear after the plowing. It means that johnsongrass was not controlled by the plowing. In summer of 1983, a moderate amount of weedy growth was maintained with a minimum amount of gerbicide application in NT and CT plots. It is possible that a small mixed weed population would be beneficial by providing cover for predatory and parasitic arthropods, and by reducing soil temperature and moisture losses.

• Korean Journal of Poultry Science
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• v.44 no.2
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• pp.75-81
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• 2017

A total of 340 individuals from seven duck populations were studied using 24 polymorphic microsatellite (MS) markers to identify plumage colors with genetic diversity. The estimated average number of alleles (Na), polymorphic information content (PIC) value, and expected heterozygosity (He) per locus of all populations were 11.5, 0.602, and 0.635, respectively. The calculated population genetic distance (Fst), inbreeding coefficient of individuals within duck populations (Fis), and total inbreeding among populations (Fit) were 0.135, 0.105, and 0.229, respectively. Statistical analyses for each population using 24 marker combinations, revealed that the estimated average number of effective alleles (Ne), observed heterozygosity (Ho), and fixation index of inbreeding within populations (F) were 3.129, 0.505, and 0.104, respectively. The results of genetic distance and phylogenetic analysis revealed that Korean native duck populations were clearly separated from all Bangladeshi duck populations. Moreover, all populations clustered well according to their genetic distance, but could not be clearly separated according to black and white plumage colors or plumage color pattern. The combination of these 24 MS markers can be used for discrimination and determination of the genetic diversity of native duck breeds in further investigations for conservation and special development purposes.

• Korean Journal of Breeding Science
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• v.42 no.1
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• pp.11-22
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• 2010

The population structure of a domesticated species is influenced by the natural history of the populations of its pre-domesticated ancestors, as well as by the breeding system and complexity of breeding practices implemented by humans. In the genetic and population structure analysis of 122 South Asia collections using 29 simple sequence repeat (SSR) markers, 362 alleles were detected, with an average of 12.5 per locus. The average expected heterozygosity and polymorphism information content (PIC) for each SSR locus were 0.74 and 0.72,respectively. The model-based structure analysis revealed the presence of three clusters with the 91.8% (shared > 75%) membership, with 8.2% showing admixture. The genetic distances of Clusters 1-3 were 0.55, 0.56, and 0.68, respectively. Polymorphic information content followed the same trend (Cluster 3 had the highest value and Cluster 1 had smallest value), with genetic distances for each cluster of 0.52, 0.52, and 0.65, respectively. This result could be used for supporting rice breeding programs in South Asia countries.

• Proceedings of the Zoological Society Korea Conference
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• 1994.10a
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• pp.239.1-239
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• 1994

No Abstract, See Full Text

• Asian-Australasian Journal of Animal Sciences
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• v.27 no.10
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• pp.1399-1405
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• 2014

The effective management of endangered animal genetic resources is one of the most important concerns of modern breeding. Evaluation of genetic diversity and relationship of local breeds is an important factor towards the identification of unique and valuable genetic resources. This study aimed to analyze the genetic diversity and population structure of six Korean native chicken breeds (n = 300), which were compared with three imported breeds in Korea (n = 150). For the analysis of genetic diversity, 30 microsatellite markers from FAO/ISAG recommended diversity panel or previously reported microsatellite markers were used. The number of alleles ranged from 2 to 15 per locus, with a mean of 8.13. The average observed heterozygosity within native breeds varied between 0.46 and 0.59. The overall heterozygote deficiency ($F_{IT}$) in native chicken was $0.234{\pm}0.025$. Over 30.7% of $F_{IT}$ was contributed by within-population deficiency ($F_{IS}$). Bayesian clustering analysis, using the STRUCTURE software suggested 9 clusters. This study may provide the background for future studies to identify the genetic uniqueness of the Korean native chicken breeds.

• Journal of Animal Reproduction and Biotechnology
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• v.36 no.3
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• pp.154-161
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• 2021

A number of Korean Chicken breeds were registered in Domestic Animal Diversity Information System (DAD-IS, http://dad.fao.org/) of the Food and Agriculture Organization (FAO). Evaluation of genetic diversity and relationship of local breeds is an important factor towards the identification of unique and valuable genetic resources. Therefore, this study aimed to analysis the genetic diversity and relationship of 22 Korean Chicken breeds using 12 microsatellite (MS) markers. The mean number of alleles for each variety was 5.52, ranging from a 3.75 (Leghorn F; NF) to a 7.0 (Ross). The most diverse breed was the Hanhyup3 (HCC), which had the highest expected heterozygosity (H_Exp) (0.754) and polymorphic information content (PIC) (0.711). The NF was the least diverse population, having the lowest H_Exp (0.467) and PIC (0.413). As a result of the principal coordinates analysis (PCoA) and factorial correspondence analysis (FCA) confirmed that Hy-line Brown (HL) and Lohmann Brown (LO) are very close to each other and that Leghorn and Rhode Island Red (RIR) are clearly distinguished from other groups. Thus, the reliability and power of identification using 12 types of MS markers were improved, and the genetic diversity and probability of individual discrimination were confirmed through statistical analysis. This study is expected to be used as basic data for the identification of Korean chicken breeds, and our results indicated that these multiplex PCR marker sets will have considerable applications in population genetic structure analysis.

• Proceedings of the National Institute of Ecology of the Republic of Korea
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• v.3 no.2
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• pp.77-83
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• 2022

This study was conducted from March 2018 to December 2019 to identify bird diversity and environmental correlates within the Mulchat-oream wetlands in the Jeju Islands of South Korea. A total of 255 individual belonging to 37 species were recorded form Mulchat-oream. The observation produced a species diversity of 3.14, species richness of 6.54 and species evenness of 0.88 in 2018, and in 2019, the observed species diversity was 3.02, species richness was 6.56 and species evenness was 0.84. The highly dominant species are composed of Passeriformes. The absence of diverse submerged plants, deep water depth and isolated geographical locations makes difficult for aquatic birds to prefer this area, and this has resulted in the dominance of Passeriformes. The appearance of the birds was the lowest in the winter and highest during the summer. The analysis showed that the species richness and evenness increased with an increase in temperature and precipitation. However, the number of species appearing during Mulchat-oream significantly dependent on the temperature (P<0.001, df=2). To date, there has been little research on bird diversity together with environmental factors for the Hallasan National Park. This study shows the environmental factors and seasonal patterns that affect bird population.

• Journal of Animal Science and Technology
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• v.65 no.5
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• pp.912-921
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• 2023

Genetic diversity analysis is crucial for maintaining and managing genetic resources. Several studies have examined the genetic diversity of Korean domestic chicken (KDC) populations using microsatellite markers, but it is difficult to capture the characteristics of the whole genome in this manner. Hence, this study analyzed the genetic diversity of several KDC populations using high-density single nucleotide polymorphism (SNP) genotype data. We examined 935 birds from 21 KDC populations, including indigenous and adapted Korean native chicken (KNC), Hyunin and Jeju KDC, and Hanhyup commercial KDC populations. A total of 212,420 SNPs of 21 KDC populations were used for calculating genetic distances and fixation index, and for ADMIXTURE analysis. As a result of the analysis, the indigenous KNC groups were genetically closer and more fixed than the other groups. Furthermore, Hyunin and Jeju KDC were similar to the indigenous KNC. In comparison, adapted KNC and Hanhyup KDC populations derived from the same original species were genetically close to each other, but had different genetic structures from the others. In conclusion, this study suggests that continuous evaluation and management are required to prevent a loss of genetic diversity in each group. Basic genetic information is provided that can be used to improve breeds quickly by utilizing the various characteristics of native chickens.