• Journal of Ecology and Environment
• /
• v.34 no.3
• /
• pp.287-293
• /
• 2011

Analysing companion species from unrelated taxa concentrated so far mainly on identifying biosurrogacy in terms of conservation biology. No study has investigated companion bird and plant species to predict breeding and migrant habitats of a bird genus. In this study we recorded and analysed companion bird and plant species of the breeding bird Cyprus Wheatear Oenanthe cypriaca and four migranting Oenanthe species on Cyprus. We found characteristic companion species in Cyprus Wheatear's, Wheatear migrant's and in control habitats where no Wheatears were present. We show that plant and bird companion species can be used as discriminating factors to predict breeding and migrant habitats of the genus Oenanthe on Cyprus. Furthermore, habitat preferences of Cyprus Wheatear's companion species indicate bushy and vegetation rich habitats avoiding woodland on the one hand and managed farmland on the other hand. In comparison, migrant Wheatear and control habitats were characterised by companion species pointing to a high openness. These results support former habitat descriptions of Cyprus Wheatear and migrant Wheatears. In more general, this study shows that companion species from unrelated taxa can be used to predict breeding and migrant habitats of a bird genus.

• Journal of Plant Biotechnology
• /
• v.42 no.3
• /
• pp.154-160
• /
• 2015

The plant breeding technology was developed with genetic engineering. Many researchers and breeders have turned from traditional breeding to molecular breeding. Genetically modified organisms (GMO) were developed via molecular breeding technology. Currently, molecular breeding technologies facilitate efficient plant breeding without introducing foreign genes, in virtue by of gene editing technology. Gene targeting (GT) via homologous recombination (HR) is one of the best gene editing methods available to modify specific DNA sequences in genomes. GT utilizes DNA repair pathways. Thus, DNA repair systems are controlled to enhance HR processing. Engineered sequence specific endonucleases were applied to improve GT efficiency. Engineered sequence specific endonucleases like the zinc finger nuclease (ZFN), TAL effector nuclease (TALEN), and CRISPR-Cas9 create DNA double-strand breaks (DSB) that can stimulate HR at a target site. RecQl4, Exo1 and Rad51 are effectors that enhance DSB repair via the HR pathway. This review focuses on recent developments in engineered sequence specific endonucleases and ways to improve the efficiency of GT via HR effectors in plants.

• Journal of Ginseng Research
• /
• v.41 no.1
• /
• pp.60-68
• /
• 2017

Background: Various Panax ginseng cultivars exhibit a range of diversity for morphological and physiological traits. However, there are few studies on diversity of metabolic profiles and genetic background to understand the complex metabolic pathway in ginseng. Methods: To understand the complex metabolic pathway and related genes in ginseng, we tried to conduct integrated analysis of primary metabolite profiles and related gene expression using five ginseng cultivars showing different morphology. We investigated primary metabolite profiles via gas chromatography-mass spectrometry (GC-MS) and analyzed transcriptomes by Illumina sequencing using adventitious roots grown under the same conditions to elucidate the differences in metabolism underlying such genetic diversity. Results: GC-MS analysis revealed that primary metabolite profiling allowed us to classify the five cultivars into three independent groups and the grouping was also explained by eight major primary metabolites as biomarkers. We selected three cultivars (Chunpoong, Cheongsun, and Sunhyang) to represent each group and analyzed their transcriptomes. We inspected 100 unigenes involved in seven primary metabolite biosynthesis pathways and found that 21 unigenes encoding 15 enzymes were differentially expressed among the three cultivars. Integrated analysis of transcriptomes and metabolomes revealed that the ginseng cultivars differ in primary metabolites as well as in the putative genes involved in the complex process of primary metabolic pathways. Conclusion: Our data derived from this integrated analysis provide insights into the underlying complexity of genes and metabolites that co-regulate flux through these pathways in ginseng.

• Proceedings of the Korean Society of Crop Science Conference
• /
• 2022.10a
• /
• pp.275-275
• /
• 2022

One of the most widely grown food crops in the world, wheat, is increasing more lodged since for increased rains and winds caused by abnormal climate. During the Green Revolution, shorter wheat cultivars were bred using many Rht genes to increase lodging resistance. However, since only some Rht genes were used for breeding shorter wheat, it may have had a limited impact on wheat breeding and reduced genetic diversity. Therefore, it is essential to search for genes that have breeding potential and affect dwarfism in order to increase the genetic diversity of dwarf characteristics in wheat. In this study, we performed the RNA-seq between 'Keumkang' and 'Komac 5' ('Keumkang' mutant) to analyze the difference in plant height. Differentially expressed genes (DEGs) analysis and Gene function annotation were performed using 265,365,558 mapped reads. Cluster set analysis was performed to compress and select candidate gene DEGs affecting plant height, stem and internode. Gene expression analysis was performed in order to identify the functions of the selected genes by condensing the results of the DEG analysis into a cluster set analysis. This analysis of these plant height-related genes could help reduce plant height, improve lodging resistance, and increase wheat yield. Its application to wheat breeding will also affect the increased genetic diversity of wheat dwarfism.

• The Plant Pathology Journal
• /
• v.24 no.1
• /
• pp.97-100
• /
• 2008

Leaf blight symptoms and abnormal defoliation were found on Stachys riederi var. japonica, a medicinal plant, grown at Hongcheon, Gangwon province, Korea in 2007. A foliar nematode, Aphelenchoides fragariae was isolated from infected leaf tissues. The symptoms observed on host plant were leaf blotching, discoloration and browning of tissues, tan-colored interveinal necrotic lesions and large dead patches of necrotic tissues. This is the first report of A. fragariae occurring on S. riederi var. japonica.

• Korean Journal of Breeding Science
• /
• v.42 no.1
• /
• pp.11-22
• /
• 2010

The population structure of a domesticated species is influenced by the natural history of the populations of its pre-domesticated ancestors, as well as by the breeding system and complexity of breeding practices implemented by humans. In the genetic and population structure analysis of 122 South Asia collections using 29 simple sequence repeat (SSR) markers, 362 alleles were detected, with an average of 12.5 per locus. The average expected heterozygosity and polymorphism information content (PIC) for each SSR locus were 0.74 and 0.72,respectively. The model-based structure analysis revealed the presence of three clusters with the 91.8% (shared > 75%) membership, with 8.2% showing admixture. The genetic distances of Clusters 1-3 were 0.55, 0.56, and 0.68, respectively. Polymorphic information content followed the same trend (Cluster 3 had the highest value and Cluster 1 had smallest value), with genetic distances for each cluster of 0.52, 0.52, and 0.65, respectively. This result could be used for supporting rice breeding programs in South Asia countries.

• Proceedings of the Korean Society of Plant Biotechnology Conference
• /
• 2005.11a
• /
• pp.404-404
• /
• 2005

• Korean Journal of Plant Resources
• /
• v.3 no.1
• /
• pp.1-30
• /
• 1990

The traditional plant imprownent methods consisted of pure line selection, cross breeding, heterosis breeding, polyploid breeding, mutati-onbreeding, ect.Biotechmoiogy is divided into gene spliclng , monocle-nal antibodies , protein engineering , agricultural research, and microbiological engineering. Of these , high plants deal with agricultural research, and the importent part of which is tissue culture and celLculture , Tissue .culture and cell culture are again divided into embryoculture, test tube fertilization, anther and pollen culture, somatichybridization , transformation, recombination, recombinant DNA moleculehybrid plasmid, ect For these haploid production, protoplast culture,protoplast fusion, selection and propagation, ect. , the technical sett-lement is needed.

• Proceedings of the Korean Society of Crop Science Conference
• /
• 2018.10a
• /
• pp.175-175
• /
• 2018

• Proceedings of the Korean Society of Crop Science Conference
• /
• 2021.04a
• /
• pp.119-119
• /
• 2021