• Journal of Microbiology and Biotechnology
• /
• 제20권11호
• /
• pp.1577-1584
• /
• 2010

In total, 140 halotolerant bacterial strains were isolated from both the soil of barren fields and the rhizosphere of six naturally growing halophytic plants in the vicinity of the Yellow Sea, near the city of Incheon in the Republic of Korea. All of these strains were characterized for multiple plant growth promoting traits, such as the production of indole acetic acid (IAA), nitrogen fixation, phosphorus (P) and zinc (Zn) solubilization, thiosulfate ($S_2O_3$) oxidation, the production of ammonia ($NH_3$), and the production of extracellular hydrolytic enzymes such as protease, chitinase, pectinase, cellulase, and lipase under in vitro conditions. From the original 140 strains tested, on the basis of the latter tests for plant growth promotional activity, 36 were selected for further examination. These 36 halotolerant bacterial strains were then tested for 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase activity. Twenty-five of these were found to be positive, and to be exhibiting significantly varying levels of activity. 16S rRNA gene sequencing analyses of the 36 halotolerant strains showed that they belong to 10 different bacterial genera: Bacillus, Brevibacterium, Planococcus, Zhihengliuella, Halomonas, Exiguobacterium, Oceanimonas, Corynebacterium, Arthrobacter, and Micrococcus. Inoculation of the 14 halotolerant bacterial strains to ameliorate salt stress (150 mM NaCl) in canola plants produced an increase in root length of between 5.2% and 47.8%, and dry weight of between 16.2% and 43%, in comparison with the uninoculated positive controls. In particular, three of the bacteria, Brevibacterium epidermidis RS15, Micrococcus yunnanensis RS222, and Bacillus aryabhattai RS341, all showed more than 40% increase in root elongation and dry weight when compared with uninoculated salt-stressed canola seedlings. These results indicate that certain halotolerant bacteria, isolated from coastal soils, have a real potential to enhance plant growth under saline stress, through the reduction of ethylene production via ACC deaminase activity.

• Journal of Microbiology and Biotechnology
• /
• 제16권2호
• /
• pp.240-246
• /
• 2006

Cyanobacteria are present abundantly in rice fields and are important in helping to maintain rice fields fertility through nitrogen fixation. Many rice fields soil contain a high density of cyanobactera, and over 50% of cyanobacterial genera that are in existence in rice paddy fields are heterocystous filamentous forms. A total of 142 isolates of heterocystous filamentous cyanobacteria were screened from 100 soil samples taken from rice paddy fields in 10 different locations across Korea, classified according to their morphological characteristics under light microscopy, and their susceptibly to fungicides examined. The collected blue-green alga were classified into a total of 14 genera, including seven genera of filamentous cyanobacteria and seven genera of nonfilamentous cyanobacteria. In particular, 142 heterocystous filamentous cyanobacteria were isolated and classified into six genera, including Anabaena, Nostoc, Calothrix, Cylindrospermum, Nodularia, Scytomena, and Tolypotrix. Yet, over 90% of the heterocystous filamentous cyanobacteria isolated from the rice paddy fields belonged to two genera: Anabaena and Nostoc. The response of 129 $N_2-fixing$ cyanobacterial isolates, 53 Anabaena and 76 Nostoc, to 10 fungicides was then investigated. The results showed that the Nostoc spp. were more tolerant of the ten tested fungicides than the Anabaena spp., and among the ten tested fungicides, benomyl showed the highest acute toxicity to Anabaena spp. and Nostoc spp. In conclusion, although benomyl is a very useful agent to control phytopathogenic fungi, the application of this fungicide to rice fields should be considered because of its toxicity to the heterocystous filamentous cyanobacteria.

• 한국작물학회지
• /
• 제38권2호
• /
• pp.196-200
• /
• 1993

알팔파 방목형 품종 Victoria와 건초형 품종 Vernal을 공시하여 실산태 새소 농도 0,2,4,8, 12mM의 다섯 수준으로 급여하여 파종 6주후 초기 생육시기에 지상부 부위별과 뿌리혹 건물증, 엽중 질산태 질소 환원 능력 및 축적 정도를 조사하였으며, 그 결과는 다음과 같이 요약된다. 1. $NO_3$￣ 수준이 높아짐에 따라 지상부 건물중이 증가하였으나 NO($NO_3$) ￣ 의 8mM과 12mM간의 차이는 없었다. 2. 두 품종 모두 8mM 이상의 NO$_3$￣ 수준에서 뿌리혹 착생이 현저히 억제되었다. 3. 엽 생체중당 nitrate reductase 활성은 $NO_3$￣ 수준이 증가함에 따라 높아졌으나 4mM이상에서는 차이가 크지 않았다. 4. 엽중 질산태 질소축적은$NO_3$￣ 의 12mM 처리시 크게 증가하였다.

• Journal of Microbiology and Biotechnology
• /
• 제23권3호
• /
• pp.289-296
• /
• 2013

Cryptomonads are unicellular, biflagellate algae. Generally, cryptomonad cells cannot be preserved well because of their fragile nature, and an improved methodology should be developed to identify cryptomonads from natural habitats. In this study, we tried using several cytological fixatives, including glutaraldehyde, formaldehyde, and their combinations to preserve field samples collected from various waters, and the currently used fixative, Lugol's solution was tested for comparison. Results showed that among the fixatives tested, glutaraldehyde preserved the samples best, and the optimal concentration of glutaraldehyde was 2%. The cell morphology was well preserved by glutaraldehyde. Cells kept their original color, volume, and shape, and important taxonomic features such as furrow/gullet complex, ejectosomes, as well as flagella could be observed clearly, whereas these organelles frequently disappeared in Lugol's solution preserved samples. The osmotic adjustments and buffers tested could not preserve cell density significantly higher. Statistical calculation showed the cell density in the samples preserved by 2% glutaraldehyde remained stable after 43 days of the fixation procedure. In addition, DNA was extracted from glutaraldehyde preserved samples by grinding with liquid nitrogen and the 18S rDNA sequence was amplified by PCR. The sequence was virtually identical to the reference sequence, and phylogenetic analyses showed very close relationship between it and sequences from the same organism. To sum up, the present study demonstrated that 2% unbuffered glutaraldehyde, without osmotic adjustments, can preserve cryptomonads cells for identification, in terms of both light microscopy and phylogenetic analyses based on DNA sequences.

• 한국작물학회:학술대회논문집
• /
• 한국작물학회 1998년도 21세기 한반도 농업전망과 대책(한국작물학회.한국육종학회 공동주관 심포지움 회보)
• /
• pp.288-312
• /
• 1998

In Korea, chemical fertilizers and agricultural chemicals have had a significant impact on food production and these are today thought to be an indispensable part of modern agriculture. On the other hand, socioeconomical and IMF and WTO status in Korea are constant reminders of the vulnerability of our fossil fuel dependent agriculture. A new crop production system to improve economic, environmental and production efficiency must be exploited. Our particular concern has been given to an integrated cropping system involving recycling of crop residues, soil and N management, biological N fixation and multipurpose legumes. As a new integrated crop production system, a no-till direct-sown rice-vetch relaying cropping system has been proposed in this paper. The formulation of this system is based on the conception that N fertilizers being neither limitlessly available nor affordable, the current high-input crop production systems have produced troubled results severe labour shortage ill rural areas, balance of payment, environmental degradation and reduction of human health far exceed economic concerns. A natural and logical consequence is that long-term sustainability of agricultural systems must rely on the use and effective management of internal resources. Based on the information obtained throughout a series of experiments last years we have proved that the no-till direct-sown rice-vetch relaying cropping system dictates biological alternative which can augment, and in some cases replace, N fertilizers. Comprehensive discussions were made for the proposed system and it concluded that the system can offer an economically attractive and ecologically sound means of reducing external nitrogen input and improving the quality and quantity of internal resources, and consequently improving the farmers as well as the national returns.

• Applied Biological Chemistry
• /
• 제28권3호
• /
• pp.149-155
• /
• 1985

전국(全國) 223개(個) 지역(地域)에서 수집(蒐集)한 두과작물(豆科作物)의 근류(根瘤)에서 총(總) 590주(株)의 근류균(根瘤菌)을 분리(分離)하여 숙주특이성(宿主特異性)에 따라, R. japonicum 218종(種), R. phaseoli 101종(種), R. trifolii 97종(種), R. meliloti 4종(種), R. leguminosarum 1종(種), Rhizobium species 101종(種), 미분류(未分類)된 균주(菌株) 159종(種)으로 분류(分類)하였다. 분리(分離)된 R. japonicum 218종(種)의 근류형성능(根瘤形成能)과 질소고정능(窒素固定能)을 비교(比較)하여. R. japonicum R-138, R-168, R-214 균주(菌株)를 우수균주(優秀菌株)로 하였다. 분리(分離) 선발(選拔)된 R. japonicum 중(中) 질소고정능(窒素固定能)이 우수(優秀)한 균주(菌株)의 plasmid를 확인(確認)한 결과(結果), fast-growing group 균주(菌株)들은 $1{\sim}4$개(個)의 거대(巨大) plasmid를 함유(含有)하고 있었으며 그 분자량(分子量)은 약(約) $35{\sim}300{\;}Md$ 정도(程度)이었다. 반면 대부분(大部分)의 slow-growing group 균주(菌株)들은 plasmid가 검출(檢出)되지 않았다.

• 한국미생물·생명공학회지
• /
• 제47권1호
• /
• pp.105-115
• /
• 2019

Saline or alkaline condition in soil inhibits growth of most crop plants and limits crop yields in many parts of the world. Augmenting an alkaline soil with alkali-tolerant bacteria capable of promoting plant growth can be a promising approach in expanding fertile agricultural land. Near-shore environments of Dokdo Island, a remote island located in the middle of the East Sea, appear to have patches of seawater-influenced haloalkaline soil that is unsupportive for growth of conventional plants. To exploit metabolic capacities of alkali-tolerant bacteria for promoting plant growth in saline or alkaline soils, we isolated of alkali-tolerant bacteria from near-shore soil samples in Dokdo and investigated properties of the isolates. Alkali-tolerant bacteria were selectively cultivated by inoculating suspended and diluted soil samples on a plate medium adjusted to pH 10. Fifty colonies were identified based on their $GTG_5$-PCR genomic fingerprints and 16S rRNA gene sequences. Most isolates were affiliated to alkali-tolerant and/or halotolerant genera or species of the phyla Firmicutes (68%), Proteobacteria (30%) and Actinobacteria (2%). Unlike the typical soil bacterial flora in the island, alkali-tolerant isolates belonged to only certain taxa of terrestrial origin under the three phyla, which have traits of plant growth promoting activities including detoxification, phytohormone production, disease/pest control, nitrogen-fixation, phosphate solubilization or siderophore production. However, Firmicutes of marine origin generally dominated the alkali-tolerant community. Results of this study suggest that haloalkaline environments like Dokdo shore soils are important sources for plant growth promoting bacteria that can be employed in bio-augmentation of vegetation-poor alkaline soils.

• Journal of Microbiology and Biotechnology
• /
• 제31권9호
• /
• pp.1218-1230
• /
• 2021

Cold-adapted plant growth-promoting bacteria (PGPB) with multiple functions are an important resource for microbial fertilizers with low-temperature application. In this study, culturable cold-adapted PGPB strains with nitrogen fixation and phosphorus solubilization abilities were isolated. They were screened from root and rhizosphere of four dominant grass species in nondegraded alpine grasslands of the Qilian Mountains, China. Their other growth-promoting characteristics, including secretion of indole-3-acetic acid (IAA), production of siderophores and ACC deaminase, and antifungal activity, were further studied by qualitative and quantitative methods. In addition, whether the PGPB strains could still exert plant growth-promoting activity at 4℃ was verified. The results showed that 67 isolates could maintain one or more growth-promoting traits at 4℃, and these isolates were defined as cold-adapted PGPB. They were divided into 8 genera by 16S rRNA gene sequencing and phylogenetic analysis, of which Pseudomonas (64.2%) and Serratia (13.4%) were the common dominant genera, and a few specific genera varied among the plant species. A test-tube culture showed that inoculation of Elymus nutans seedlings with cold-adapted PGPB possessing different functional characteristics had a significant growth-promoting effect under controlled low-temperature conditions, including the development of the roots and aboveground parts. Pearson correlation analysis revealed that different growth-promoting characteristics made different contributions to the development of the roots and aboveground parts. These cold-adapted PGPB can be used as excellent strain resources suitable for the near-natural restoration of degraded alpine grasslands or agriculture stock production in cold areas.

• Journal of Microbiology and Biotechnology
• /
• 제31권5호
• /
• pp.645-658
• /
• 2021

Porins are essential for the viability of Gram-negative bacteria. They ensure the uptake of nutrients, can be involved in the maintenance of outer membrane integrity and define the antibiotic or drug resistance of organisms. The function and structure of porins in proteobacteria is well described, while their function in photoautotrophic cyanobacteria has not been systematically explored. We compared the domain architecture of nine putative porins in the filamentous cyanobacterium Anabaena sp. PCC 7120 and analyzed the seven candidates with predicted OprB-domain. Single recombinant mutants of the seven genes were created and their growth capacity under different conditions was analyzed. Most of the putative porins seem to be involved in the transport of salt and copper, as respective mutants were resistant to elevated concentrations of these substances. In turn, only the mutant of alr2231 was less sensitive to elevated zinc concentrations, while mutants of alr0834, alr4741 and all4499 were resistant to high manganese concentrations. Notably the mutant of alr4550 shows a high sensitivity against harmful compounds, which is indicative for a function related to the maintenance of outer membrane integrity. Moreover, the mutant of all5191 exhibited a phenotype which suggests either a higher nitrate demand or an inefficient nitrogen fixation. The dependency of porin membrane insertion on Omp85 proteins was tested exemplarily for Alr4550, and an enhanced aggregation of Alr4550 was observed in two omp85 mutants. The comparative analysis of porin mutants suggests that the proteins in parts perform distinct functions related to envelope integrity and solute uptake.

• 한국환경복원기술학회지
• /
• 제25권2호
• /
• pp.15-22
• /
• 2022

This study has been conducted to investigate the appropriate mixed sowing rates with white clover (Trifolium repens) and Kentucky bluegrass (Poa pratensis) by evaluating initial growth. Six different mixed sowing rates (CT, Control Trifolium repens; CP, Control Poa pratensis; T1P3, Trifolium repens 1 : Poa pratensis 3; T1P2, Trifolium repens 1 : Poa pratensis 2; T1P1, Trifolium repens 1 : Poa pratensis 1; T2P1, Trifolium repens 2 : Poa pratensis 1; T3P1, Trifolium repens 3 : Poa pratensis 1) with three repetitions were implemented in greenhouse experiment plastic pots (50.5 length × 35.0 width × 8.5 cm height). Plant height, leaf length, leaf width, number of leaves, root length, fresh weight, and dry weight were measured after a week from the germination for three months. Initial growth of Kentucky bluegrass significantly increased as mixed sowing rates with increasing, while that of white clover kept relatively decreasing than that in Control. Initial growth strongly affected sowing mixed rates by Kentucky bluegrass and not by white clover in this experiment, indicating that grasses played a dominant role during initial growth period. However, seeding rates with white clover will be dependent on the use of a turf and the desired green cover. There remains a need to further study of the mechanisms and dynamics of legume and grass competition to underpin sustainable management practices.