• Title/Summary/Keyword: new strain

Search Result 2,120, Processing Time 0.03 seconds

Biodegradation of Di-n-Butyl Phthalate by Rhodococcus sp. JDC-11 and Molecular Detection of 3,4-Phthalate Dioxygenase Gene

  • Jin, De-Cai;Liang, Ren-Xing;Dai, Qin-Yun;Zhang, Rui-Yong;Wu, Xue-Ling;Chao, Wei-Liang
    • Journal of Microbiology and Biotechnology
    • /
    • v.20 no.10
    • /
    • pp.1440-1445
    • /
    • 2010
  • Rhodococcus sp. JDC-11, capable of utilizing di-n-butyl phthalate (DBP) as the sole source of carbon and energy, was isolated from sewage sludge and confirmed mainly based on 16S rRNA gene sequence analysis. The optimum pH, temperature, and agitation rate for DBP degradation by Rhodococcus sp. JDC-11 were 8.0, $30^{\circ}C$, and 175 rpm, respectively. In addition, low concentrations of glucose were found to inhibit the degradation of DBP, whereas high concentrations of glucose increased its degradation. Meanwhile, a substrate utilization test showed that JDC-11 was also able to utilize other phthalates. The major metabolites of DBP degradation were identified as monobutyl phthalate and phthalic acid by gas chromatography-mass spectrometry, allowing speculation on the tentative metabolic pathway of DBP degradation by Rhodococcus sp. JDC-11. Using a set of new degenerate primers, a partial sequence of the 3,4-phthalate dioxygenase gene was obtained from JDC-11. Moreover, a sequence analysis revealed that the phthalate dioxygenase gene of JDC-11 was highly homologous to the large subunit of the phthalate dioxygenase from Rhodococcus coprophilus strain G9.

Improved Production of Medium-Chain-Length Polyhydroxyalkanoates in Glucose-Based Fed-Batch Cultivations of Metabolically Engineered Pseudomonas putida Strains

  • Poblete-Castro, Ignacio;Rodriguez, Andre Luis;Lam, Carolyn Ming Chi;Kessler, Wolfgang
    • Journal of Microbiology and Biotechnology
    • /
    • v.24 no.1
    • /
    • pp.59-69
    • /
    • 2014
  • One of the major challenges in metabolic engineering for enhanced synthesis of value-added chemicals is to design and develop new strains that can be translated into well-controlled fermentation processes using bioreactors. The aim of this study was to assess the influence of various fed-batch strategies in the performance of metabolically engineered Pseudomonas putida strains, ${\Delta}gcd$ and ${\Delta}gcd-pgl$, for improving production of medium-chain-length polyhydroxyalkanoates (mcl-PHAs) using glucose as the only carbon source. First we developed a fed-batch process that comprised an initial phase of biomass accumulation based on an exponential feeding carbon-limited strategy. For the mcl-PHA accumulation stage, three induction techniques were tested under nitrogen limitation. The substrate-pulse feeding was more efficient than the constant-feeding approach to promote the accumulation of the desirable product. Nonetheless, the most efficient approach for maximum PHA synthesis was the application of a dissolved-oxygen-stat feeding strategy (DO-stat), where P. putida ${\Delta}gcd$ mutant strain showed a final PHA content and specific PHA productivity of 67% and $0.83g{\cdot}l^{-1}{\cdot}h^{-1}$, respectively. To our knowledge, this mcl-PHA titer is the highest value that has been ever reported using glucose as the sole carbon and energy source. Our results also highlighted the effect of different fed-batch strategies upon the extent of realization of the intended metabolic modification of the mutant strains.

Characterization of Canthaxanthin Isomers Isolated from a New Soil Dietzia sp. and Their Antioxidant Activities

  • Venugopalan, Vijayalatha;Tripathi, Subhash K.;Nahar, Pradip;Saradhi, P. Pardha;Das, Rakha H.;Gautam, Hemant K.
    • Journal of Microbiology and Biotechnology
    • /
    • v.23 no.2
    • /
    • pp.237-245
    • /
    • 2013
  • Canthaxanthin (cx) is a potent antioxidant that is chemically synthesized at the industrial scale and has imperative applications in the cosmetic and feed industries. An orange pigmented mesophilic bacterium, designated as K44, was isolated from soil samples of Kargil, India. Biochemical tests, 16S rRNA gene sequencing, and FAME analysis of the bacterium indicated it to belong in the genus Dietzia and is distinct from human isolates. The strain showed 98% 16S rRNA gene sequence homology with Dietzia maris DSM 43102. High-performance liquid chromatography profile of the pigments isolated from K44 showed two major peaks absorbing at 465.3 and 475 nm. The liquid chromatography-mass spectrometry (LC-MS) analysis of both these peaks revealed their m/z to be 564. The molecular weights, LC-MS/MS fragmentation patterns, and ${\lambda}_{max}$ of these fractions corresponded to all-trans- (475 nm) and 9-cis-(465.3 nm) cx isomers. The antioxidant activities of cis- and trans-cx isomers isolated from this bacterium were found to differ, where the cis-isomer showed higher free radical, superoxide radical, and reactive oxygen species scavenging activities than the alltrans- isomer, suggesting that 9-cis-cx is more effective as an antioxidant than the all-trans-cx.

Characterization of Newly Bred Cordyceps militaris Strains for Higher Production of Cordycepin through HPLC and URP-PCR Analysis

  • Lee, Hyun-Hee;Kang, Naru;Park, Inmyoung;Park, Jungwook;Kim, Inyoung;Kim, Jieun;Kim, Namgyu;Lee, Jae-Yun;Seo, Young-Su
    • Journal of Microbiology and Biotechnology
    • /
    • v.27 no.7
    • /
    • pp.1223-1232
    • /
    • 2017
  • Cordyceps militaris, a member of Ascomycota, a mushroom referred to as caterpillar Dong-chung-ha-cho, is commercially valuable because of its high content of bioactive substances, including cordycepin, and its potential for artificial cultivation. Cordycepin (3'-deoxyadenosine) is highly associated with the pharmacological effects of C. militaris. C. militaris is heterothallic in that two mating-type loci, idiomorph MAT1-1 and MAT1-2, exist discretely in two different spores. In this study, nine C. militaris strains were mated with each other to prepare newly bred strains that produced a larger amount of cordycepin than the parent strains. Nine strains of C. militaris were identified by comparing the internal transcribed spacer sequence, and a total of 12 single spores were isolated from the nine strains of C. militaris. After the MAT idiomorph was confirmed by PCR, 36 mating combinations were performed with six single spores with MAT1-1 and the others with MAT1-2. Eight mating combinations were successfully mated, producing stroma with perithecia. Cordycepin content analysis of all strains by high-performance liquid chromatography revealed that the KASP4-bred strain produced the maximum cordycepin among all strains, regardless of the medium and stroma parts. Finally, universal rice primer-PCR was performed to demonstrate that the bred strains were genetically different from the parental strains and new C. militaris strains. These results may be related to the recombination of genes during mating. The newly produced strains can be used to meet the industrial demand for cordycepin. In addition, breeding through mating suggests the possibility of producing numerous cordycepin-producing C. militaris strains.

Exploration of the Glycosyltransferase BmmGT1 from a Marine-Derived Bacillus Strain as a Potential Enzyme Tool for Compound Glycol-Diversification

  • Liu, Quanquan;Ren, Pengfei;Liu, Yang;Qin, Wen;Li, Huayue;Li, Wenli
    • Journal of Microbiology and Biotechnology
    • /
    • v.28 no.6
    • /
    • pp.931-937
    • /
    • 2018
  • Glycosyltransferases (GTs) from microbes are an emerging and rich source for efficient glycol-transformation of natural/unnatural compounds. Here, we probed the catalytic capability and substrate promiscuity of BmmGT1 from marine-derived Bacillus methylotrophicus B-9987. The regioselectivity of BmmGT1 on macrolactin A (1) was explored by optimization of the reaction conditions, in which a series of O-glycosylated macrolactins (1a-1e) were generated, including two new di/tri-O-glucosyl analogs (1b and 1e). Furthermore, BmmGT1 was able to catalyze the glycosylation of the thiol (S-) or amine (N-) sites of phenolic compounds (2 and 3), leading to the generation of N- (2a) or S-glycosides (3a and 3b). The present study demonstrates that BmmGT1 could serve as a potential enzyme tool for O-, N-, or S-glycosyl structural diversification of compounds for drug discovery.

Seismic Performance of Octagonal Flared RC Columns using Oblong Hoops (장방형 띠철근을 이용한 팔각형 플레어 RC 기둥의 내진성능)

  • Ko, Seong-Hyun
    • Journal of the Korea institute for structural maintenance and inspection
    • /
    • v.19 no.6
    • /
    • pp.1-9
    • /
    • 2015
  • Transverse steel bars are used in the plastic hinge zone of columns to insure adequate confinement, prevention of longitudinal bar buckling and ductile behavior. Fabrication and placement of rectangular hoops and cross-ties in columns are difficult to construct. Details of reinforcement for rectangular section require a lot of rectangular hoops and cross-ties. In this paper, to solve these problems, the new lateral confinement method using oblong hoop is proposed for the transverse confinement of the flared column. It can be the alternative for oblong cross-section and flared column with improved workability and cost-efficiency. The final objectives of this study are to suggest appropriate oblong hoop details and to provide quantitative reference data and tendency for seismic performance or damage assessment based on the drift levels such as residual deformation, elastic strain energy. This paper describes factors of seismic performance such as ultimate displacement/drift ratio, displacement ductility, response modification factor, equivalent viscous damping ratio and effective stiffness.

Analytic adherend deformation correction in the new ISO 11003-2 standard: Should it really be applied?

  • Ochsner, A.;Gegner, J.;Gracio, J.
    • Journal of Adhesion and Interface
    • /
    • v.5 no.2
    • /
    • pp.14-26
    • /
    • 2004
  • For reliable determination of mechanical characteristics of adhesively bonded joints used e.g. as input data for computer-aided design of complex components, the thick-adherend tensile-shear test according to ISO 11003-2 is the most important material testing method. Although the total displacement of the joint is measured across the polymer layer directly in the overlap zone in order to minimize the influence of the stepped adherends, the substrate deformation must be taken into account within the framework of the evaluation of the shear modulus and the maximum shear strain, at least when high-strength adhesives are applied. In the standard ISO 11003-2 version of 1993, it was prescribed to perform the substrate deformation correction by means of testing a one-piece reference specimen. The authors, however, pointed to the excessive demands on the measuring accuracy of the extensometers connected with this technique in industrial practice and alternatively proposed a numerical deformation analysis of a dummy specimen. This idea of a mathematical correction was included in the revised ISO 11003-2 version of 2001 but in the simplified form of an analytical method based on Hooke's law of elasticity for small strains. In the present work, it is shown that both calculation techniques yield considerably discordant results. As experimental assessment would require high-precision distance determination (e.g. laser extensometer), finite element analyses of the deformation behavior of the bonded joint are performed in order to estimate the accuracy of the obtained substrate deformation corrections. These simulations reveal that the numerical correction technique based on the finite element deformation modeling of the reference specimen leads to considerably more realistic results.

  • PDF

Studios on the Host Range of Cucumber Mosaic Virus in Korea (한국에서의 오이모자익 바이러스의 기주범위에 관한 연구)

  • Chung B. J.;Park H. C.;Lee S. H.
    • Korean journal of applied entomology
    • /
    • v.14 no.4 s.25
    • /
    • pp.185-192
    • /
    • 1975
  • Various plant species, as many as 145 species in 43 families, were tested for susceptibility to the ordinary strain of the cucumber nosaic virus for two years from 1973 to 1974. Inoculations were made by mechanical method using carborundum. Plants in 71 species belonging to 27 families were infected. Of these species, systemic mosaic developed on the new leaves of plants in 57 species belonging to 24 families. Twenty-four species of plants, previously not reported as hosts of the CMV, were found to be infected in this experiment. These are Stellaria aquatica, Achyrauthes japonica, Agerratum houstonianum, Centipeda minima, Gillardia pulchella, Henisteptalyrate, Ixeris dentata, Saussurea uchiyamana, Brassica campestris, Lepidiumapetalum, Lobelia chinensis, Chenopodium bryoniaefolium, Carex neofilipes, Acalypha austalis, Amphicarpaea edgeworthii, Lotus corniculatus var japonicus, Phaseolus angularis, Sedum aizoom var heterodontum, Mosla punctulata, Perilla frutescens var japonica, Teucrium japonicum,. Linum usitatissimum, Mazus japonicus, Verbena hybrida. Twenty-three species reported to be susceptible by previous workers, but negative results were obtained in our experiment with Allium cepa, Celosia cristat, Daucus carota var. sativa, Artemisia asiatica, Callistenphus chinensis, Erigeron canadensis, Helianthusannuus, Tagetes eracta, Impatiens balsamina, Raphanus sativus, Ipomea batatas, Glycine max, Phaseolus vulgaris, Lilium longifolium, Papaver gomniferum, Sorghum vulgare, Triticum aestivum, Zea mays, Rumex coreanus, Potulaca grandiflora.

  • PDF

Setting Estimation of Cement Paste Using New-type Embedded Sensor (매입형 센서를 활용한 시멘트 풀의 응결 시간 측정)

  • Shin, Kyung-Joon;Lee, Do-Keun;Seo, Dong-Wan;Yoo, Chul-Min;Lim, Min-Hyuk;Lim, Sung-Hwan
    • Journal of the Korean Recycled Construction Resources Institute
    • /
    • v.4 no.4
    • /
    • pp.483-488
    • /
    • 2016
  • The present study proposes an economical embedded ring-sensor that can measure a strain behavior of cement paste and mortar in early age. Using the proposed ring-sensor, the experimental method is proposed that can measure the setting time of the cement paste and mortar conveniently. The experimental study has been conducted using the mixtures of which W/C are 0.30, 0.35, 0.40, and 0.45. From the test result, the setting times measured by convectional test methods such as vicat method and penetration resistance method are compared with the setting time proposed by this study. The result reveals that the proposed ring-sensor can effectively measure the early age behavior so that can evaluate the time when the contraction starts. In addition, the contraction starting time can be regarded as a rational setting time, which is similar to the initial setting of convectional test methods.

Multicast using Label Aggregation in MPLS Environment (MPLS환경에서의 Label Aggregation을 통한 Multicast 지원 방안)

  • Park, Pong-Min;Kim, Gyeong-Mok;Oh, Young-Hwan
    • Journal of the Institute of Electronics Engineers of Korea TC
    • /
    • v.42 no.10 s.340
    • /
    • pp.9-16
    • /
    • 2005
  • The growth of the Internet over the last several years has placed a tremendous strain on the high bandwidth Hence, the amount of internet traffic has risen sharply and it has demanded to use the limited resource. MPLS (Multiprotocol Label Switching) is regarded as a core technology for migrating to the next generation Internet. It is important to reduce the number of labels and LSP(Label Switched Path)s for network resource management. In this thesis, we considered an MPLS multicast mechanism in the current Internet. The scalability problem due to lack of labels and multicast property is one of the serious problems in MPLS multicast mechanism, we proposed a Label Aggregation algorithm that the multicast packets on same link in MPLS allocates the same label for the scalability problem. In order to support the proposed algorithm we defined a new LDP(Label Distribution Protocol) multicast field and multicast packet is copied and transmitted for multicast group links of next node in LSR(label Switch Router).