• Biomedical Science Letters
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• v.16 no.3
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• pp.187-192
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• 2010

The aim of this study was to compare the results of morphological phenotypic examination and molecular biological method, randomly amplified polymorphic DNA (RAPD) using clinical isolates from Korean patients infected with dermatophytes. A total of 44 clinical isolates have been collected by Korean Collection Medical Fungi (KCMF) and those were subjected for the RAPD analysis. The results showed that the fungal strains that have RG1 band patterns were identified as Trichophyton rubrum by the neighbour-joining analysis. Additionally, other fungal strains that have RG3 band patterns were identified as Epidermophyton floccosum and RG5 band patterns were identified as Micorsporum gypseum. Even though molecular biological method such as RAPD are not necessary, it might be useful when some strains have similar morphological characteristics or when same species has phenotypic variations. In this study, therefore, we targeted internal transcribed spacer (ITS) regions of fungal rDNA, performed RAPD and then compared with morphological phenotypic examination.

• Fisheries and Aquatic Sciences
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• v.18 no.1
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• pp.109-113
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• 2015

Three leptocephali (22.2, 22.7, 56.0 mm in total length) collected from the East/Japan Sea were identified by morphological and genetic analyses as belonging to the genus Scolecenchelys (Anguilliformes, Ophichthidae). Morphologically, the specimens were characterized by 148-158 myomeres, 10 gut swellings, dorsal fin origin above middle of the body, and 6 postanal melanophores between the anus and the caudal margin. An analysis of an 849-base pair 12S rRNA sequence of mitochondrial DNA showed that sequences are concordant with those of adult Scolecenchelys fuscogularis (genetic distance = 0.001). Furthermore total number of myomeres is consistent with the total number of vertebrae in adult S. fuscogularis. This study provides the first description of the morphological characteristics of S. fuscogularis leptocephali and their variations with size. The Korean name of S. fuscogularis is "Ga-neun-mul-baem", established by Ji et al. (2012).

• Journal of agriculture & life science
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• v.45 no.6
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• pp.1-7
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• 2011

This work was performed to confirm the molecular discrimination through the nrITS1 sequences among 3 taxa of Scirpus L. sensu lato (s.l.) species. S. planiculmis represented only 2 base sequence variations with S. maritimus in spite that they showed different morphological features. The nucleotide sequences of the ITS1 region from S. planiculmis were shown to have 99.1% homology with S. maritimus and 60.4% homology with S. triqueter. Although the morphology of S. planiculmis is similar with S. triqueter, molecular basis of the size and sequences on ITS1 region were shown to have distinctive differences. For divergency investigation on same sites and metapopulation, sequencing was conducted on ITS1 region with partial 5.8S and 18S regions. All plants of each species collected at the same site had identical band size pattern and sequences. Intraspecific molecular divergency was not identified in spite that these species live in different wetland sites. The ITS1 sequences described here provided a powerful genetic tool for phylogenetic studies which was difficult by morphological identification as high rate of morphological plasticity.

• The Plant Pathology Journal
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• v.38 no.4
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• pp.304-312
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• 2022

Boxwood is a representative ornamental shrub that is widely used in landscaping horticulture. After pruning, damaged leaves or stems of boxwoods are unavoidably vulnerable to infection by various plant pathogens. Several boxwood diseases caused by fungi, such as Volutella blight and Macrophoma leaf spot, have been reported worldwide including Republic of Korea. In this study, we isolated and identified fungal pathogens of boxwood diseases that occurred in Korea and characterized their morphological and taxonomic characteristics. Boxwood samples showing blight symptoms were collected in Seoul, Republic of Korea, and the putative fungal pathogens Pseudonectria buxi, P. foliicola, and Neofusicoccum buxi were successfully identified. Investigation of the morphological features of the field isolates, including mycelial growth and conidial morphology, and phylogenetic analysis of multiple DNA barcode loci revealed that there were some morphological and genetic variations among isolates, but all of the analyzed isolates were closely related to the corresponding reference strains. We also found that P. foliicola strains were more virulent than P. buxi, and the N. buxi strains isolated in this study were weak pathogens or saprophytes. The results of our study will contribute to the development of control strategies for boxwood diseases caused by fungi and accelerate research on the complex ecology of boxwood diseases.

• Asian Journal of Turfgrass Science
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• v.24 no.2
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• pp.97-105
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• 2010

This study focuses on investigating morphological characteristics and variations level in native zoysiagrasses from costal regions and islands in South Korea. In addition, this were collected to conserve germplasm for the breeding of zoysiagrass. One hundred fifty-nine of native zoysiagrasses were collected from 16 different cities and districts. There were morphological evaluations, including plant height, leaf width, leaf length, leaf angle, seed length(SL), seed width(SW), SL/SW ratio and number of seed per spike in native zoysiagrasses. Type of Z. japonica, Z. sinica, Z. macrostachya and Z. matrella showed significant variations in plant height, leaf length, leaf angle and number of seed per spike depending on where they were collected from. On the other hand, little variation were found in leaf width, seed length, seed width and SL/SW ratio. We have discovered a variety of variations among the investigated traits in hybrid zoysiagrass. These results can be used as basic information for development of zoysiagrass breeding.

• Korean Journal of Ichthyology
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• v.29 no.1
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• pp.1-12
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• 2017

A natural hybrid of interspecific between the Coreoleuciscus splendidus and C. aeruginos (Cypriniformes: Cyprinidae) was captured in the Hwang-ji Stream, a tributary of the Nakdong River basin in Korea. An interspecific hybrid between C. splendidus and C. aeruginos was genetically identified based on morphological characteristics and the sequence analysis of nuclear recombination activating gene 1 (RAG1) gene (1,334 bp) and mitochondrial cytochrome c oxidase subunit 1 (CO1) gene (1,551 bp). As a result of morphological variations, the natural hybrid appeared to have an intermediate character between two parental species (C. splendidus and C. aeruginos) in three variations of black array (s) on dorsal, caudal and anal fin rays. Phylogenetic analysis inferred from RAG1 and CO1 sequence data revealed that Coreoleuciscus populations from Hwang-ji stream consist of two pure Coreoleuciscus species and a hybrid individual group. The individuals were clearly identified the cross and reciprocal hybrid by CO1 gene analysis. In RAG1 gene, 13 nucleotide variation loci were detected and the hybrid individuals displayed the double peaks of sequence chromatograms at the 9 diagnostic positions. In this study, molecular data and morphological variations were clearly demonstrated that hybridization did occur between C. splendidus and C. aeruginos. However, F2 hybrid generation and reproductive capacity of F1 hybrid individuals were not demonstrated.

• Animal Systematics, Evolution and Diversity
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• v.37 no.1
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• pp.26-30
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• 2021

Botrylloides violaceus is native to the Northwest Pacific, including Korea. This species has many color variations in alive condition and a variety of zooid compound forms, and therefore difficult to identification in the field survey. This is the first report of COI DNA barcodes of B. violaceus from Korea. The intra-specific pairwise distance between Korean and UK populations had ranged from 1.4% to 2.6%. The inter-specific variations between B. violaceus and other Botrylloides species were 21.0-36.8%. The new DNA barcodes for Korean B. violaceus may be helpful in the identification of colonial ascidians, which is a difficult task when based on morphological identification.

• Animal Systematics, Evolution and Diversity
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• v.39 no.4
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• pp.169-175
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• 2023

A branchial parasitic bopyrid, Parabopyrella elongata (Shiino, 1949), is newly recorded in Korean fauna. Parabopyrella elongata differs from its congeners by the following characteristics: the head is smooth anteriorly in females; the pleon of females has distinct and wide lateral indentations on both sides; the pleotelson has a rounded distal end in females; oostegite 1 has a rounded posterolateral point; the pleon of males is single-segmented; and the uropod is absent in males. In this study, the detailed description and illustrations of the species are presented with an emended key to known Parabopyrella species in the Far East. The variations in P. elongata were also discussed. This is the first report of the genus Parabopyrella from South Korea.

• Korean Journal of Remote Sensing
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• v.37 no.4
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• pp.789-802
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• 2021

Synthetic Aperture Radar (SAR) at C-band is an ideal remote sensing system for crop monitoring owing to its short wavelength, which interacts with the upper parts of the crop canopy. This study evaluated the potential of dual polarimetric Sentinel-1 at C-band for monitoring rice phenology. Rice phenological variations occur in a short period. Hence, the short revisit time of Sentinel-1 SAR system can facilitate the tracking of short-term temporal morphological variations in rice crop growth. The sensitivity of SAR backscattering coefficients, backscattering ratio, and polarimetric decomposition parameters on rice phenological stages were investigated through a time-series analysis of 33 Sentinel-1 Single Look Complex images collected from 10th April to 25th October 2020 in Gimhae, South Korea. Based on the observed temporal variations in SAR parameters, we could identify and distinguish the phenological stages of the Gimhae rice growth cycle. The backscattering coefficient in VH polarisation and polarimetric decomposition parameters showed high sensitivity to rice growth. However, amongst SAR parameters estimated in this study, the VH backscattering coefficient realistically identifies all phenological stages, and its temporal variation patterns are preserved in both Sentinel-1A (S1A) and Sentinel-1B (S1B). Polarimetric decomposition parameters exhibited some offsets in successive acquisitions from S1A and S1B. Further studies with data collected from various incidence angles are crucial to determine the impact of different incidence angles on polarimetric decomposition parameters in rice paddy fields.

• Proceedings of the KIEE Conference
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• 2005.05a
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• pp.63-65
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• 2005

In this study, the automatic face tracking algorithm is proposed by using the color and edge information of a color image. To reduce the effects of variations in the illumination conditions, an acquired CCD color image is first transformed into YCbCr color coordinates, and subsequently the morphological image processing operations, and the elliptical geometric measures are applied to extract the refined facial area.