• 제목/요약/키워드: morphological and molecular data

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Plocamium serrulatum(Plocamiaceae), a red algal species newly recorded in Korea

  • Kang, Pil Joon;An, Jae Woo;Nam, Ki Wan
    • 환경생물
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    • 제38권3호
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    • pp.476-480
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    • 2020
  • A marine red algal species was collected from Uljin, located on the eastern coast of Korea, during a survey of marine algal flora. This alga shares the generic features of Plocamium, and is characterized by linear, flat and thin thalli with narrow axes, branches developing in alternating pairs from margins of the axes, two to four times alternately pinnately branching, linear or occasionally adaxially curved lowermost branchlets and distinctly and compactly clustered stichidia. In a phylogenetic tree based on rbcL sequences, the Korean alga nests in the same clade as P. serrulatum. The genetic distance between both sequences within the clade was calculated as 0.0-0.2%. Based on the morphological and molecular data, this Korean species is identified as P. serrulatum described originally from Taiwan. This is the first record of P. serrulatum in Korean marine algal flora.

New record of Chondrus retortus (Gigartinales, Rhodophyta) in Korea

  • Kang, Pil Joon;An, Jae Woo;Nam, Ki Wan
    • 환경생물
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    • 제38권3호
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    • pp.481-485
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    • 2020
  • A marine red algal species was collected from Honghyeon-ri, Namhae located on the southern coast of Korea during a survey of marine algal flora. This alga shares the generic features of Chondrus, and is characterized by short and thin, canaliculated and crisped fronds as C. retortus. Tetrasporangia are developed from shallow medullary cells on both sides of branches. In a phylogenetic tree based on rbcL sequences, the Korean alga nests in the same clade as C. retortus originally described from Japan. The genetic distance between both sequences within the clade was calculated as 0.0-0.1%. Based on the morphological and molecular data, the alga is identified as Chondrus retortus. This is the first record of C. retortus in Korean marine algal flora.

New record of Callophyllis mageshimensis (Gigartinales, Kallymeniaceae) in Korea

  • Kang, Pil Joon;An, Jae Woo;Nam, Ki Wan
    • 환경생물
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    • 제38권4호
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    • pp.611-615
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    • 2020
  • A marine red algal species was collected from Pyengdae-ri, Gujwa in Jeju, Korea during a survey of marine algal flora. This alga shares the generic features of Callophyllis(Gigartinales, Kallymeniaceae), and is characterized by erect and membranous thalli, branches dichotomously or trichotomoulsy divided, margin somewhat undulate or entire and tetrasporangia scattered irregularly in the cortex. In a phylogenetic tree based on rbc L sequences, the Korean alga nests in the same clade as C. mageshimensis originally described from Japan. The genetic distance between both sequences within the clade was 0.0-0.1%. Based on the morphological and molecular data, the alga was identified as Callophyllis mageshimensis. This is the first record of C. mageshimensis in Korean marine algal flora.

Genetic Distances Among Rice Mutant Genotypes Assessed by AFLP and Aluminum Tolerance-Related Traits

  • Malone, Emilia;Kopp, Mauricio Marini;Malone, Gaspar;Branco, Juliana Severo Castelo;Carvalho, Fernando Iraja Felix;Oliveira, Antonio Costa de
    • Journal of Crop Science and Biotechnology
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    • 제10권2호
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    • pp.106-111
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    • 2007
  • Increasing genetic variability with mutagenic agents has been broadly employed in plant breeding because it has the potential to alter one or more desirable traits. In this study, a molecular analysis assessed by Amplified Fragment Length Polymorphisms(AFLPs) and a morphological analysis based on seedlings subjected to aluminum stress were compared. Also, an analysis of allelic frequencies was performed to observe unique alleles present in the pool. Genetic distances ranging from 0.448 to 0.953 were observed, suggesting that mutation inducing was effective in generating variability. The genetic distances based on morphological data ranged from 0(genotypes 22 and 23) to 30.38(genotypes 15 and 29). In the analysis of allelic frequency, 13 genotypes presented unique alleles, suggesting that mutation inducing was also targeting unique sites. Mutants with good performance under aluminum stress(9, 15, 18 and 27) did not form the same clusters when morphological and molecular analyses were compared, suggesting that different genomic regions may be responsible for their better performance.

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Sinuolinea capsularis (Myxosporea: Sinuolineidae) Isolated from Urinary Bladder of Cultured Olive Flounder Paralichthys olivaceus

  • Shin, Sang Phil;Jin, Chang Nam;Sohn, Han Chang;Lee, Jehee
    • Parasites, Hosts and Diseases
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    • 제57권2호
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    • pp.127-134
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    • 2019
  • Sinuolinea capsularis Davis, 1917 is myxosporean that infect the urinary system of the host fish. Insufficient morphological and molecular data of S. capsularis exits, and it is therefore difficult to make an accurate identification of the parasite. We tried a series of morphological and molecular analysis to identify an myxosporean isolated from urinary bladder of cultured olive flounder, Paralichthys olivaceus, from Jeju island in the Republic of Korea. Some of them were observed under a light microscope and SEM, and remain samples were used molecular and phylogenetic analysis. Mature spores were subspherical, measuring $13.9{\pm}0.6{\mu}m$ in length and $13.8{\pm}0.8{\mu}m$ in width. Two spherical polar capsules on opposite sides in the middle of the spore had a diameter range of $4.3{\pm}0.4{\mu}m$. Scanning electron microscopy revealed that spores a severely twisted the suture line. By the morphological comparison and analysis, it was identified as S. capsularis. In addition, we obtained the partial 18S rDNA of S. capsularis and first registered it in NCBI. Phylogenetic analysis showed that S. capsularis clustered with Zschokkella subclade infecting the urinary system of marine fish, and it supported the infection site tropism effect on phylogeny of marine myxosporeans as well as the origin of Sinuolinea is not monophyly.

Morphology and phylogenetic relationships of Micractinium (Chlorellaceae, Trebouxiophyceae) taxa, including three new species from Antarctica

  • Chae, Hyunsik;Lim, Sooyeon;Kim, Han Soon;Choi, Han-Gu;Kim, Ji Hee
    • ALGAE
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    • 제34권4호
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    • pp.267-275
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    • 2019
  • Three new species of the genus Micractinium were collected from five localities on the South Shetland Islands in maritime Antarctica, and their morphological and molecular characteristics were investigated. The vegetative cells are spherical to ellipsoidal and a single chloroplast is parietal with a pyrenoid. Because of their simple morphology, no conspicuous morphological characters of new species were recognized under light microscopy. However, molecular phylogenetic relationships were inferred from the concatenated small subunit rDNA, and internal transcribed spacer (ITS) sequence data indicated that the Antarctic microalgal strains are strongly allied to the well-supported genus Micractinium, including M. pusillum, the type species of the genus, and three other species in the genus. The secondary structure of ITS2 and compensatory base changes were used to identify and describe six Antarctic Micractinium strains. Based on their morphological and molecular characteristics, we characterized three new species of Micractinium: M. simplicissimum sp. nov., M. singularis sp. nov., and M. variabile sp. nov.

Morphological and Molecular Classifications of Genus Pholis

  • Lee, Sung-Hoon;Jang, Yo-Soon;Baik, Chung-Boo;Han, Kyeong-Ho;Myung, Jung-Goo;Lee, Jin-Hee;Choi, Sang-Duk;Kim, Seon-Jae;Kim, Jong-Oh;Hwang, Jae-Ho
    • Animal cells and systems
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    • 제13권4호
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    • pp.453-460
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    • 2009
  • Morphological and molecular classifications were attempted in an effort to establish species-specific classifications of three species of the genus Pholis in Korea; these species were subjected to morphological and molecular methodologies using body measurements, RFLP, RAPD, and phylogenetic trees using the nucleotide sequences of mitochondrial 16S and 12S ribosomal DNAs, cytochrome c oxidase I, and cytochrome b. The data demonstrated that the three species of genus Pholis are distinct from each other, both morphologically and genetically.

형태 및 분자적 특징에 의한 때죽나무 녹병균(Pucciniastrum styracinum)의 재확인 (Rust Fungus Pucciniastrum styracinum on Styrax japonicus in Korea Confirmed by Morphological and Molecular Data)

  • 박지현;정복남;이재성;최영준;신현동
    • 한국균학회지
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    • 제49권4호
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    • pp.531-537
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    • 2021
  • 때죽나무는 때죽나무과에 속하는 낙엽 소교목으로 우리나라와 중국, 일본, 대만이 원산이나 캐나다, 미국, 영국 등에도 도입되어 분포하고 있다. 1990년 이후 전국에 분포하는 때죽나무에서 녹병균이 지속적으로 발견되었다. 한국의 때죽나무 녹병균의 형태적 특성은 일본의 쪽동백나무에서 보고된 Pucciniastrum styracinum의 형태적 특성과 가장 유사하였으며 internal transcribed spacer (ITS) 및 28S large subunit (LSU) rDNA의 염기서열의 분자계통학적 분석을 통해 동정을 확인하였다. 본 연구에서는 한국의 때죽나무에서 발견한 녹병균 P. styracinum의 존재를 재확인하였고, 균학적 특성과 형태적 측정치 및 분자적 특성에 대한 정보를 제공하였다.

Identification of three independent fern gametophytes and Hymenophyllum wrightii f. serratum from Korea based on molecular data

  • LEE, Chang Shook;LEE, Kanghyup;HWANG, Youngsim
    • 식물분류학회지
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    • 제50권4호
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    • pp.403-412
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    • 2020
  • Colonies of three independent gametophytes (one that is filamentous and two that are ribbon-like) without sporophytes occur in Gyeonggi-do, Gangwon-do, Gyeongsang-do, and Jeju-do, Korea. They have a moss-like appearance at first sight, with tiny plantlets and gemmae, and grow in cool, shaded, relatively deep dint places of large rocks, such as the small caves in high mountains, close to valleys. The gametophytes were identified based on morphological and molecular data by chloroplast DNA (cpDNA) sequence data (rbcL, rps4 gene and rps4-trnS intergenic spacer). Here, rbcL, rps4 gene and rps4-trnS intergenic spacer data of one independent gametophyte distributed in Korea have the same morphology, DNA sequence and monophyletic group as Crepidomanes intricatum from the eastern United States. They also share the same cpDNA data with Crepidomanes schmidtianum recently reported from Korea. The other independent gametophyte should be Hymenophyllum wrightii based on cpDNA data. The last one was presumed to be Pleurosoriopsis makinoi based on molecular data. The taxonomic status was confirmed to be the forma of Hymenophyllum wrightii through a revision of Hymenophyllum wrightii f. serratum based on molecular data.

Taxonomic Revision of the Genus Lactifluus (Russulales, Basidiomycota) of South Korea

  • Lee, Hyun;Wissitrassameewong, Komsit;Park, Myung Soo;Fong, Jonathan J.;Verbeken, Annemieke;Kim, Changmu;Lim, Young Woon
    • Mycobiology
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    • 제49권4호
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    • pp.308-345
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    • 2021
  • Lactifluus (Pers.) Roussel is an ectomycorrhizal genus that was recently recognized to be distinct from the genus Lactarius. To date, 226 Lactifluus species have been reported worldwide. Misidentification of Lactifluus species is common because of intraspecific morphological variation, cryptic diversity, and the limited number of taxonomic keys available. Molecular data are indispensable for species delimitation; a multilocus phylogenetic analysis showed that most Asian Lactifluus species are not conspecific with morphologically similar species present on other continents. In particular, Korea has misused European and North American Lactifluus names. In this study, we evaluated the taxonomy of Lactifluus in Korea using both morphological and multilocus molecular (ITS, nrLSU, rpb1, and rpb2) data. We examined 199 Lactifluus specimens collected between 1980 and 2016, and a total of 24 species across the four Lactifluus subgenera were identified. All Korean species are distinct and clearly separated from European and North American species. Five taxa corresponded to previously described species from Asia and the remaining 19 taxa are confirmed as new species. Herein, we provide keys to the Korean Lactifluus species within their subgenera, molecular phylogenies, a summary of diversity, and detailed description of the new species.