• 제목/요약/키워드: molecular monitoring

검색결과 396건 처리시간 0.027초

Recent Applications of Molecularly Imprinted Polymers (MIPs) on Screen-Printed Electrodes for Pesticide Detection

  • Adilah Mohamed Nageib;Amanatuzzakiah Abdul Halim;Anis Nurashikin Nordin;Fathilah Ali
    • Journal of Electrochemical Science and Technology
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    • 제14권1호
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    • pp.1-14
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    • 2023
  • The overuse of pesticides in agricultural sectors exposes people to food contamination. Pesticides are toxic to humans and can have both acute and chronic health effects. To protect food consumers from the adverse effects of pesticides, a rapid monitoring system of the residues is in dire need. Molecularly imprinted polymer (MIP) on a screen-printed electrode (SPE) is a leading and promising electrochemical sensing approach for the detection of several residues including pesticides. Despite the huge development in analytical instrumentation developed for contaminant detection in recent years such as HPLC and GC/MS, these conventional techniques are time-consuming and labor-intensive. Additionally, the imprinted SPE detection system offers a simple portable setup where all electrodes are integrated into a single strip, and a more affordable approach compared to MIP attached to traditional rod electrodes. Recently, numerous reviews have been published on the production and sensing applications of MIPs however, the research field lacks reviews on the use of MIPs on electrochemical sensors utilizing the SPE technology. This paper presents a distinguished overview of the MIP technique used on bare and modified SPEs for the detection of pesticides from four recent publications which are malathion, chlorpyrifos, paraoxon and cyhexatin. Different molecular imprint routes were used to prepare these biomimetic sensors including solution polymerization, thermal polymerization, and electropolymerization. The unique characteristics of each MIP-modified SPE are discussed and the comparison among the findings of the papers is critically reviewed.

Molecular characterization of H3N2 influenza A virus isolated from a pig by next generation sequencing in Korea

  • Oh, Yeonsu;Moon, Sung-Hyun;Ko, Young-Seung;Na, Eun-Jee;Tark, Dong-Seob;Oem, Jae-Ku;Kim, Won-Il;Rim, Chaekwang;Cho, Ho-Seong
    • 한국동물위생학회지
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    • 제45권1호
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    • pp.31-38
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    • 2022
  • Swine influenza (SI) is an important respiratory disease in pigs and epidemic worldwide, which is caused by influenza A virus (IAV) belonging to the family of Orthomyxoviridae. As seen again in the 2009 swine-origin influenza A H1N1 pandemic, pigs are known to be susceptible to swine, avian, and human IAVs, and can serve as a 'mixing vessel' for the generation of novel IAV variants. To this end, the emergence of swine influenza viruses must be kept under close surveillance. Herein, we report the isolation and phylogenetic study of a swine IAV, A/swine/Korea/21810/2021 (sw21810, H3N2 subtype). BLASTN sequence analysis of 8 gene segments of the isolated virus revealed a high degree of nucleotide similarity (94.76 to 100%) to porcine strains circulating in Korea and the United States. Out of 8 genome segments, the HA gene was closely related to that of isolates from cluster I. Additionally, the NA gene of the isolate belonged to a Korean Swine H1N1 origin, and the PB2, PB1, NP and NS genes of the isolate were grouped into that of the Triple reassortant swine H3N2 origin virus. The PA and M genes of the isolate belonged to 2009 Pandemic H1N1 lineage. Human infection with mutants was most common through contact with infected pigs. Our results suggest the need for periodic close monitoring of this novel swine H3N2 influenza virus from a public health perspective.

Monitoring mRNA Expression Patterns in Macrophages in Response to Two Different Strains of Probiotics

  • Sang-Pil Choi;Si-Won Park;Seok-Jin Kang;Seul Ki Lim;Min-Sung Kwon;Hak-Jong Choi; Taehoon Chun
    • 한국축산식품학회지
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    • 제43권4호
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    • pp.703-711
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    • 2023
  • As an initial study to elucidate the molecular mechanism of how probiotics modulate macrophage activity, we monitored mRNA expression patterns in peritoneal macrophages (PMs) treated with two different strains of probiotics. After treatment with either Weissella cibaria WIKIM28 or Latilactobacillus sakei WIKIM50, total RNAs from PMs were isolated and subjected into gene chip analyses. As controls, mRNAs from vehicle (phosphate-buffered saline, PBS)-treated PMs were also subjected to gene chip analysis. Compared to vehicle (PBS)-treated PMs, WIKIM28-treated and WIKIM50-treated PMs exhibited a total of 889 and 432 differentially expressed genes with expression differences of at least 4 folds, respectively. Compared to WIKIM28-treated PMs, WIKIM50-treated PMs showed 25 up-regulated genes and 21 down-regulated genes with expression differences of more than 2 folds. Interestingly, mRNA transcripts of M2 macrophage polarization marker such as anxa1, mafb, and sepp1 were increased in WIKIM50-treated PMs comparing to those in WIKIM28-treated PMs. Reversely, mRNA transcripts of M1 macrophage polarization marker such as hdac9, ptgs2, and socs3 were decreased in WIKIM50-treated PMs comparing to those in WIKIM28-treated PMs. In agreement with these observations, mRNA expression levels of tumor necrosis factor-α and interleukin-1α were significantly reduced in WIKIM50-treated macrophages compared to those in WIKIM28-treated macrophages. These results may indicate that probiotics can be classified as two different types depending on their ability to convert macrophages into M1 or M2 polarization.

Porcine epidemic diarrhea virus: an update overview of virus epidemiology, vaccines, and control strategies in South Korea

  • Guehwan Jang;Duri Lee;Sangjune Shin;Jeonggyo Lim;Hokeun Won;Youngjoon Eo;Cheol-Ho Kim;Changhee Lee
    • Journal of Veterinary Science
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    • 제24권4호
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    • pp.58.1-58.25
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    • 2023
  • Porcine epidemic diarrhea virus (PEDV) has posed significant financial threats to the domestic pig industry over the last three decades in South Korea. PEDV infection will mostly result in endemic persistence in the affected farrow-to-finish (FTF) herds, leading to endemic porcine epidemic diarrhea (PED) followed by year-round recurrent outbreaks. This review aims to encourage collaboration among swine producers, veterinarians, and researchers to offer answers that strengthen our understanding of PEDV in efforts to prevent and control endemic PED and to prepare for the next epidemics or pandemics. We found that collaboratively implementing a PED risk assessment and customized four-pillar-based control measures is vital to interrupt the chain of endemic PED in affected herds: the former can identify on-farm risk factors while the latter aims to compensate for or improve weaknesses via herd immunity stabilization and virus elimination. Under endemic PED, long-term virus survival in slurry and asymptomatically infected gilts ("Trojan Pigs") that can transmit the virus to farrowing houses are key challenges for PEDV eradication in FTF farms and highlight the necessity for active monitoring and surveillance of the virus in herds and their environments. This paper underlines the current knowledge of molecular epidemiology and commercially available vaccines, as well as the risk assessment and customized strategies to control PEDV. The intervention measures for stabilizing herd immunity and eliminating virus circulation may be the cornerstone of establishing regional or national PED eradication programs.

The change of Phytophthora infestans Populations in South Korea using Traditional Markers and Genome Analyses

  • Do Hee Kwon;Jin Hee Seo;Yong Ik Jin;Gun Ho Jung;Jang Gyu Choi;Gyu Bin Lee;Kwang Ryong Jo;Jaeyoun Yi;Hwang Bae Sohn;Young Eun Park
    • 한국작물학회:학술대회논문집
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    • 한국작물학회 2022년도 추계학술대회
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    • pp.257-257
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    • 2022
  • Late blight, caused by the hemibiotrophic oomycete pathogen Phytophthora infestans, has been the most important disease limiting potato production worldwide. P. infestans undergo major population shifts in agricultural systems via the successive emergence and migration of asexual lineages. The phenotypic and genotypic bases of these selective sweeps are largely unknown but management strategies need to adapt to reflect the changing pathogen population. Here, we used molecular markers to divide the 86 South Korea isolates into six clonal lineages: KR_1_A1, KR_2_A2, SIB-1, US-11, SIB-1 like, and KR-2 like. We documented the emergence of a new lineage, termed SIB-1 like, and KR-2 like, and their rapid replacement of other lineages to exceed 35% of the pathogen population across South Korea. Genome analyses of the Korean P. infestans populations revealed extensive genetic polymorphism, particularly in effector genes. Importantly, SIB-1 like isolates carry an intact Avr8 effector gene that triggers resistance in potato carrying the corresponding R immune receptor gene R8 cloned from Solarium demissum. These findings point toward a strategy for deploying genetic resistance to mitigate the impact of the SIB-1 like lineage and illustrate how pathogen population monitoring, combined with genome analysis, informs the management of devastating disease epidemics. Further study is being done on pathogenicity of the SIB-1 like isolates on cultivated potatoes and changes in expression patterns of disease effector genes within the SIB-1 like isolates

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Diagnosis and Monitoring of Chronic Myeloid Leukemia: Chiang Mai University Experience

  • Tantiworawit, Adisak;Kongjarern, Supanat;Rattarittamrong, Ekarat;Lekawanvijit, Suree;Bumroongkit, Kanokkan;Boonma, Nonglak;Rattanathammethee, Thanawat;Hantrakool, Sasinee;Chai-Adisaksopha, Chatree;Norasetthada, Lalita
    • Asian Pacific Journal of Cancer Prevention
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    • 제17권4호
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    • pp.2159-2164
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    • 2016
  • Background: A diagnosis of chronic myeloid leukemia (CML) is made on discovery of the presence of a Philadelphia (Ph) chromosome. The success of the treatment of this form of leukemia with tyrosine kinase inhibitor (TKI) is monitored by reduction of the Ph chromosome. Objective: To compare the role of conventional cytogenetic (CC) methods with a real time quantitative polymerase chain reaction (RQ-PCR) and fluorescence in situ hybridization (FISH) for diagnosis and treatment monitoring of CML patients. The secondary outcome was to analyze the treatment responses to TKI in CML patients. Materials and Methods: This was a retrospective study of CML patients who attended the Hematology clinic at Chiang Mai University Hospital from 2005-2010. Medical records were reviewed for demographic data, risk score, treatment response and the results of CC methods, FISH and RQ-PCR. Results: One hundred and twenty three cases were included in the study, 57.7% of whom were male with a mean age of 46.9 years. Most of the patients registered as intermediate to high risk on the Sokal score. At diagnosis, 121 patients were tested using the CC method and 118 (95.9%) were identified as positive. Five patients failed to be diagnosed by CC methods but were positive for BCR-ABL1 using the FISH method. Imatinib was the first-line treatment used in 120 patients (97.6%). In most patients (108 out of 122, 88.5%), a complete cytogenetic response (CCyR) was achieved after TKI therapy and in 86 patients (70.5%) CCyR was achieved long term by the CC method. Five out of the 35 analyzed patients in which CCyR was achieved by the CC method had a positive FISH result. Out of the 76 patients in which CCyR was achieved, RQ-PCR classified patients to only CCyR in 17 patients (22.4%) with a deeper major molecular response (MMR) in 4 patients (5.3%) and complete molecular response (CMR) in 55 patients (72.4%). In the case of initial therapy, CCyR was achieved in 95 patients (79.1%) who received imatinib and in both patients who received dasatinib (100%). For the second line treatment, nilotinib were used in 30 patients and in 19 of them (63.3%) CCyR was achieved. In half of the 6 patients (50%) who received dasatinib as second line or third line treatment CCyR was also achieved. Conclusions: CML patients had a good response to TKI treatment. FISH could be useful for diagnosis in cases where CC analysis failed to detect the Ph chromosome. RQ-PCR was helpful in detecting any residual disease and determining the depth of the treatment response at levels greater than the CC methods.

LC-MS/MS를 이용한 축산물 중 clenbuterol과 ractopamine의 동시 분석법 개선 (Improvement of an Simultaneous Determination for Clenbuterol and Ractopamine in Livestock Products using LC-MS/MS)

  • 조윤제;채영식;김재영;김형수;강일현;도정아;오재호;권기성;장문익
    • 한국식품과학회지
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    • 제45권1호
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    • pp.25-33
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    • 2013
  • 동물용의약품은 2007년부터 급격한 잔류허용기준 신설에 따라 많은 수의 분석법도 함께 신설하였으며, 국제식품규격위원회(CODEX), EU 등에서 동물용의약품에 대한 기준이 국제적으로 엄격해지고 있어, 낮은 농도의 정량한계 및 재현성이 높은 분석법이 요구되어지고 있다. 하지만 국내 식품공전에서의 클렌부테롤 및 락토파민 분석법은 각각 개별 분석법으로 나뉘어져 있고, 시간적 및 경제적으로 손실이 있을 뿐 아니라 추출 효율 및 재현성이 낮아 분석에 어려움이 있다. 따라서 본 연구는 물리화학적 특성이 유사한 ${\beta}$-agonist계 동물용의약품인 클렌부테롤 및 락토파민의 기존 개별 분석법을 동시 분석법으로 개선하고 검사 효율성을 증대시키고자 하였다. 분석에 사용된 검체는 소와 돼지의 근육을 이용하였다. 검체에 내부표준물질인 클렌부테롤-$d_9$과 락토파민-$d_3$을 각각 첨가하고 ${\beta}$-글루쿠로니다제/아릴설파타제 효소를 사용하여 가수분해한 후 에틸아세테이트로 추출하였다, 추출액을 농축한 후 헥산과 메탄올을 포화시킨 용매를 적용하여 지방 제거과정을 거친 뒤 MIP 카트리지로 정제한 후 액체크로마토그래피-질량분석기(LC-MS/MS)에 주입하였다. 기기분석은 ESI(Electro-Spray Ionization) 및 positive MRM(Multiple Reaction Monitoring) 모드로 하였고, 검증은 CODEX 가이드라인 규정에 따라 실시하였다. 그 결과, 클렌부테롤과 락토파민의 LOQ는 각각 0.2 및 0.5 ${\mu}g/kg$ 수준이었고, 평균회수율은 각각 104.2-113.5% 및 107.6-118.1%로 나타났다. 또한, 분석오차는 각각 2.8-10.5% 및 1.6-5.2%로 CODEX 가이드라인 규정에 만족하는 수준이었다. 따라서 개선된 동시 분석법은 잔류동물용의약품의 분석에 있어 보다 신속하고 경제적인 분석 및 모니터링에 적용 가능할 것으로 기대된다.

내수면 양식 어류에서 분리된 Edwardsiella 속 균주들의 유전학적 동정 및 생화학적 특성 (Genetic Identification and Biochemical Characteristics of Edwardsiella Strains Isolated from Freshwater Fishes Cultured in Korea)

  • 장문희;김근용;이유희;오윤경;이정호;송준영
    • 한국어병학회지
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    • 제33권2호
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    • pp.111-118
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    • 2020
  • 우리나라 내수면 양식 어류로부터 Edwardsiella 속 세균 7개 균주를 분리하여 이들의 생화학적 특성 및 유전학적 특성을 조사하였다. 그 결과, 기존의 어류 병원성 세균으로 알려진 E. tarda 와 E. ictaluri 뿐 아니라, 최근 새로운 종으로 보고된 E. anguillarum과 E. piscicida를 성공적으로 분리 및 동정하여 우리나라 내수면 양식 어류에서 Edwardsiella 속의 다양한 종이 분리되는 것을 확인하였다. 뱀장어류에서 분리된 4개 균주는 E. anguillarum, E. piscicida 및 E. tarda로, 메기와 동자개로부터 분리된 2개 균주는 E. ictaluri로, 버들치로부터 분리된 1개 균주는 E. piscicida로 동정되었다. 또한, 이들의 생화학적 특성의 조사 결과, 이들은 대부분 E. anguillarum, E. ictaluri, E. piscicida 및 E. tarda의 각 종에 해당하는 전형적인 생화학적 특성을 나타내었으며, 유전자를 이용한 분자계통발생학적 분석 결과와도 일치하였다. 특히, 16S rRNA 및 gyrB 유전자를 이용하여 Edwardsiella 속 종의 명확한 분류가 가능함을 확인함으로써, Edwardsiella 속 세균의 분류학적 동정을 위한 마커로써의 가능성을 제시하였다. 본 연구의 결과, 우리나라 내수면 양식 어류로부터 다양한 Edwardsiella 속 종들이 분리되는 것을 확인하였으며, 이들 종들에 대한 체계적인 모니터링 및 숙주에 따른 병원성의 차이에 관한 연구가 필요함을 제안한다.

Development of Battery Management System for Electric Vehicle Applications of Ni/MH Battery

  • Jung Do Yang;Lee Baek Haeng;Kim Sun Wook
    • 전기화학회지
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    • 제4권4호
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    • pp.152-159
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    • 2001
  • 전기자동차의 성능은 축전지의 성능에 의해 크게 좌우된다. 그러므로 우수한 성능과 높은 신뢰성을 가진 전기자동차를 개발하기 위해서는 다양한 운영조건에서 축전지가 최대의 성능을 가질 수 있게 잘 관리되어야 한다. 축전지의 성능 향상은 축전지 관리 시스템(BMS)의 적용에 의해 달성될 수 있으며 BMS는 축전지의 상태 감시뿐만 아니라 축전지의 충전 및 방전을 최적화하는 중요한 역할을 수행한다. 이 연구에서는 전기자동차에 적용된 니켈 메탈하이드라이드 전지(Ni/MH battery) 이용을 최대화하기 위한 역할을 수행하는 BMS를 개발하였다 이 시스템은 축전지의 충전 및 방전 제어, 과충전 및 과방전 방지, 잔존용량 계산 및 표시, 안전관리 및 열관리 등의 기능을 가진다. 금번 개발된 BMS를 대우자동차와 고등기술원이 공동 개발한 DEV5-5전기자동차에 장착하여 시험을 수행하였다. 이 차량에는 파나소닉사의 12V-95Ah사양의 Ni/MH battery 18모듈이 적용되었다 시험결과 이 시스템은 $3\%$ 이내의 높은 정확성을 가지고 있으며 우수한 신뢰성을 나타내었다. 이 BMS는 전기자동차의 신뢰성과 안전도뿐만 아니라 Ni/MH battery pack의 성능과 수명을 향상시킬 것이다.

AtMAP65-1 Binds to Tubulin Dimers to Promote Tubulin Assembly

  • Li, Hua;Yuan, Ming;Mao, Tonglin
    • BMB Reports
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    • 제40권2호
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    • pp.218-225
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    • 2007
  • In Arabidopsis thaliana, the microtubule-associated protein AtMAP65-1 shows various functions on microtubule dynamics and organizations. However, it is still an open question about whether AtMAP65-1 binds to tubulin dimers and how it regulates microtubule dynamics. In present study, the tubulin-binding activity of AtMAP65-1 was investigated. Pull-down and co-sedimentation exp eriments demonstrated that AtMAP65-1 bound to tubulin dimers,at a molar ratio of 1 : 1. Cross-linking experiments showed that AtMAP65-1 bound to tubulin dimers by interacting with $\alpha$-tubulin of the tubulin heterodimer. Interfering the bundling effect of AtMAP65-1 by addition of salt and monitoring the tubulin assembly, the experiment results indicated that AtMAP65-1 promoted tubulin assembly by interacting with tubulin dimers. In addition, five truncated versions of AtMAP65-1, namely AtMAP65-1 $\Delta$N339 (amino acids 340-587); AtMAP65-1 $\Delta$N494 (amino acids 495-587); AtMAP65-1 340-494 (amino acids 340-494); AtMAP65-1 $\Delta$C495 (amino acids 1-494) and AtMAP65-1 $\Delta$C340 (amino acids 1-339), were tested for their binding activities and roles in tubulin polymerization in vitro. Four (AtMAP65-1 $\Delta$N339, $\Delta$N494, AtMAP65-1 340-494 and $\Delta$C495) from the five truncated proteins were able to co-sediment with microtubules, and three (AtMAP65-1 $\Delta$N339, $\Delta$N494 and AtMAP65-1 340-494) of them could bind to tubulin dimers in vitro. Among the three truncated proteins, AtMAP65-1 $\Delta$N339 showed the greatest activity to promote tubulin polymerization, AtMAP65-1 $\Delta$N494 exhibited almost the same activity as the full length protein in promoting tubulin assembly, and AtMAP65-1 340-494 had minor activity to promote tubulin assembly. On the contrast, AtMAP65-1 $\Delta$C495, which bound to microtubules but not to tubulin dimers, did not affect tubulin assembly. Our study suggested that AtMAP65-1 might promote tubulin assembly by binding to tubulin dimers in vivo.