• 제목/요약/키워드: mixed-effects model

검색결과 484건 처리시간 0.029초

Evaluation of Megasphaera elsdenii supplementation on rumen fermentation, production performance, carcass traits and health of ruminants: a meta-analysis

  • Irwan Susanto;Komang G. Wiryawan;Sri Suharti;Yuli Retnani;Rika Zahera;Anuraga Jayanegara
    • Animal Bioscience
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    • 제36권6호
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    • pp.879-890
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    • 2023
  • Objective: This study was conducted to evaluate the use of Megasphaera elsdenii (M. elsdenii) as a probiotic on rumen fermentation, production performance, carcass traits and health of ruminants by integrating data from various related studies using meta-analysis. Methods: A total of 32 studies (consisted of 136 data points) were obtained and integrated into a database. The parameters integrated were fermentation products, rumen microbes, production performance, carcass quality, animal health, blood and urine metabolites. Statistical analysis of the compiled database used a mixed model methodology. Different studies were considered random effects, while M. elsdenii supplementation doses were considered fixed effects. p-values and the Akaike information criterion were employed as model statistics. The model was deemed significant at p<0.05 or had a tendency to be significant when p-value between 0.05<p<0.10. Results: Supplementation with M. elsdenii increased (p<0.05) some proportion of fermented rumen products such as propionate, butyrate, isobutyrate, and valerate, and significantly reduced (p<0.05) lactic acid concentration, acetate proportion, total bacterial population and methane emission. Furthermore, the probiotic supplementation enhanced (p<0.05) livestock production performance, especially in the average daily gain and body condition score. Regarding the carcass quality, hot carcass weight and carcass gain were elevated (p< 0.05) due to the M. elsdenii supplementation. Animal health also showed improvement as indicated by the lower (p<0.05) diarrhoea and bloat incidences as well as the liver abscess. However, M. elsdenii supplementation had negligible effects on blood and urine metabolites of ruminants. Conclusion: Supplementation of M. elsdenii is capable of decreasing ruminal lactic acid concentration, enhancing rumen health, elevating some favourable rumen fermentation products, and in turn, increasing production performance of ruminants.

Genomic partitioning of growth traits using a high-density single nucleotide polymorphism array in Hanwoo (Korean cattle)

  • Park, Mi Na;Seo, Dongwon;Chung, Ki-Yong;Lee, Soo-Hyun;Chung, Yoon-Ji;Lee, Hyo-Jun;Lee, Jun-Heon;Park, Byoungho;Choi, Tae-Jeong;Lee, Seung-Hwan
    • Asian-Australasian Journal of Animal Sciences
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    • 제33권10호
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    • pp.1558-1565
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    • 2020
  • Objective: The objective of this study was to characterize the number of loci affecting growth traits and the distribution of single nucleotide polymorphism (SNP) effects on growth traits, and to understand the genetic architecture for growth traits in Hanwoo (Korean cattle) using genome-wide association study (GWAS), genomic partitioning, and hierarchical Bayesian mixture models. Methods: GWAS: A single-marker regression-based mixed model was used to test the association between SNPs and causal variants. A genotype relationship matrix was fitted as a random effect in this linear mixed model to correct the genetic structure of a sire family. Genomic restricted maximum likelihood and BayesR: A priori information included setting the fixed additive genetic variance to a pre-specified value; the first mixture component was set to zero, the second to 0.0001×σ2g, the third 0.001×σ2g, and the fourth to 0.01×σ2g. BayesR fixed a priori information was not more than 1% of the genetic variance for each of the SNPs affecting the mixed distribution. Results: The GWAS revealed common genomic regions of 2 Mb on bovine chromosome 14 (BTA14) and 3 had a moderate effect that may contain causal variants for body weight at 6, 12, 18, and 24 months. This genomic region explained approximately 10% of the variance against total additive genetic variance and body weight heritability at 12, 18, and 24 months. BayesR identified the exact genomic region containing causal SNPs on BTA14, 3, and 22. However, the genetic variance explained by each chromosome or SNP was estimated to be very small compared to the total additive genetic variance. Causal SNPs for growth trait on BTA14 explained only 0.04% to 0.5% of the genetic variance Conclusion: Segregating mutations have a moderate effect on BTA14, 3, and 19; many other loci with small effects on growth traits at different ages were also identified.

단어재인에 있어서 처리단위의 적응적 변화 (Adaptive Changes in the Grain-size of Word Recognition)

  • Lee, Chang H.
    • 한국인지과학회:학술대회논문집
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    • 한국인지과학회 2002년도 춘계학술대회
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    • pp.111-116
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    • 2002
  • The regularity effect for printed word recognition and naming depends on ambiguities between single letters (small grain-size) and their phonemic values. As a given word is repeated and becomes more familiar, letter-aggregate size (grain-size) is predicted to increase, thereby decreasing the ambiguity between spelling pattern and phonological representation and, therefore, decreasing the regularity effect. Lexical decision and naming tasks studied the effect of repetition on the regularity effect for words. The familiarity of a word from was manipulated by presenting low and high frequency words as well as by presenting half the stimuli in mixed upper- and lowercase letters (an unfamiliar form) and half in uniform case. In lexical decision, the regularity effect was initially strong for low frequency words but became null after two presentations; in naming it was also initially strong but was merely reduced (although still substantial) after three repetitions. Mixed case words were recognized and named more slowly and tended to show stronger regularity effects. The results were consistent with the primary hypothesis that familiar word forms are read faster because they are processed at a larger grain-size, which requires fewer operations to achieve lexical selection. Results are discussed in terms of a neurobiological model of word recognition based on brain imaging studies.

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Friction Characteristics of piston Skirt Parametric Investigation

  • Cho, Myung-Rae;Kim, Jee-Woon;Moon, Tae-Sun;Han, Dong-Chul
    • KSTLE International Journal
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    • 제3권1호
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    • pp.1-6
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    • 2002
  • The purpose of this paper is to investigate the effects of design parameters on the friction loss in piston skirt. An analytical model to describe the friction characteristics of piston skirt has been presented, which is based on the secondary motion of piston and mixed lubrication theory, It could be shown that the skirt friction closely depends on the side force acted on the piston pin. The side force is inf1uenced by cylinder pressure at low engine speed, but by inertia force at high engine speed. The usage of extensive skirt area and low weight piston is effective to reduce the friction loss at high speed. The low viscosity oil considerably decreases viscous friction as engine speed increases, but it increases boundary friction at low engine speed. From the parametric study, it is found that the skirt axial profile is the most important design parameter related to the reduction of skirt friction.

담배연기응축물의 DNA 손상작용과 야채 및 과일추출물의 보호효과 (Antigenotoxicity of Vegetable or Fruit Extract against Cigarette Smoke Condensate)

  • 이형주;허찬;김남이;허문영
    • 약학회지
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    • 제55권3호
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    • pp.251-259
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    • 2011
  • Cigarette smoke condensate (CSC) is known to be carcinogenic compound. CSC contains many organic compounds such as polycyclic aromatic hydrocarbons (PAHs), and heterocyclic amine compounds (HCAs). Reactive oxygen species (ROS) are also generated and induce oxidative DNA damage during the metabolism of CSC. The rat microsome mediated and DNA repair enzyme treated comet assays together with conventional comet assay were performed to evaluate the mechanisms of CSC genotoxicity. The organic extract of CSC induced oxidative and microsome mediated DNA damage. Vitamin C as a model antioxidant reduced DNA damage in endonuclease III treated comet assay. One of flavonoid, galangin as a CYP1A1 inhibitor, reduced DNA damage in the presence of S-9 mixture. The ethanol extracts of the mixed vegetables (BV) or the mixed fruits (BF) showed potent inhibitory effects against CSC induced DNA damage with oxidative DNA lesions and in the prescence of S-9 mixture. These results indicate that BV and BF could prevent CSC-induced cellular DNA damage by inhibiting oxidative stress and suppressing cytochrome P450 in mammalian cells.

Numerical nonlinear bending analysis of FG-GPLRC plates with arbitrary shape including cutout

  • Reza, Ansari;Ramtin, Hassani;Yousef, Gholami;Hessam, Rouhi
    • Structural Engineering and Mechanics
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    • 제85권2호
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    • pp.147-161
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    • 2023
  • Based on the ideas of variational differential quadrature (VDQ) and finite element method (FEM), a numerical approach named as VDQFEM is applied herein to study the large deformations of plate-type structures under static loading with arbitrary shape hole made of functionally graded graphene platelet-reinforced composite (FG-GPLRC) in the context of higher-order shear deformation theory (HSDT). The material properties of composite are approximated based upon the modified Halpin-Tsai model and rule of mixture. Furthermore, various FG distribution patterns are considered along the thickness direction of plate for GPLs. Using novel vector/matrix relations, the governing equations are derived through a variational approach. The matricized formulation can be efficiently employed in the coding process of numerical methods. In VDQFEM, the space domain of structure is first transformed into a number of finite elements. Then, the VDQ discretization technique is implemented within each element. As the last step, the assemblage procedure is performed to derive the set of governing equations which is solved via the pseudo arc-length continuation algorithm. Also, since HSDT is used herein, the mixed formulation approach is proposed to accommodate the continuity of first-order derivatives on the common boundaries of elements. Rectangular and circular plates under various boundary conditions with circular/rectangular/elliptical cutout are selected to generate the numerical results. In the numerical examples, the effects of geometrical properties and reinforcement with GPL on the nonlinear maximum deflection-transverse load amplitude curve are studied.

The Ability of L2 LSTM Language Models to Learn the Filler-Gap Dependency

  • Kim, Euhee
    • 한국컴퓨터정보학회논문지
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    • 제25권11호
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    • pp.27-40
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    • 2020
  • 본 논문은 장단기기억신경망(LSTM)이 영어를 배우면서 학습한 암묵적 통사 관계인 필러-갭 의존 관계를 조사하여 영어 문장 학습량과 한국인 영어 학습자(L2ers)의 문장 처리 패턴 간의 상관관계를 규명한다. 이를 위해, 먼저 장단기기억신경망 언어모델(LSTM LM)을 구축하였다. 이 모델은 L2ers가 영어 학습 과정에서 잠재적으로 배울 수 있는 L2 코퍼스의 영어 문장들로 심층학습을 하였다. 다음으로, 이 언어 모델을 이용하여 필러-갭 의존 관계 구조를 위반한 영어 문장을 대상으로 의문사 상호작용 효과(wh-licensing interaction effect) 즉, 정보 이론의 정보량인 놀라움(surprisal)의 정도를 계산하여 문장 처리 양상을 조사하였다. 또한 L2ers 언어모델과 상응하는 원어민 언어모델을 비교 분석함으로써, 두 언어모델이 문장 처리에서 필러-갭 의존 관계에 내재된 추상적 구문 구조를 추적할 수 있음을 보여주었을 뿐만 아니라, 또한 선형 혼합효과 회귀모델을 사용하여 본 논문의 중심 연구 주제인 의존 관계 처리에 있어서 원어민 언어모델과 L2ers 언어모델간 통계적으로 유의미한 차이가 존재함을 규명하였다.

A/D 변환기 회로에서 터미네이션 임피던스의 crosstalk에 대한 영향 분석 (A Study On Effects of The Termination Conditions on Crosstalk in The A/D Converter Circuit)

  • 임한상
    • 전자공학회논문지SC
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    • 제47권2호
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    • pp.35-42
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    • 2010
  • 본 논문은 A/D 변환기(Analog-to-Digital Converter) 회로에서 신호선의 터미네이션 조건이 crosstalk에 의해 왜곡되기 쉬운 특성을 가지며 동작 주파수가 높아짐에 따라 이에 대한 주의가 더욱 요구된다. 그중에서도 아날로그 신호인 입력 신호와 레퍼런스 전압 신호는 crosstalk에 의해 왜곡되기 쉬운 아날로그 신호이면서, A/D 변환 전체의 동작 성능을 좌우하는 신호들이다. 이 두 신호들은 각각의 회로 구성에 따라 독특한 터미네이션 조건을 가지므로 본 논문에서는 주파수 영역에서 임피던스 불일치 조건을 고려한 crosstalk를 모델링하고 해당 터미네이션 조건이 crosstalk에 미치는 영향을 확인한다. 먼저, A/D 변환기 회로에서 두 신호의 회로 구성을 파악한 후 near-end와 far-end에서 임피던스 불일치를 고려한 crosstalk 모델을 유도한다. 유도한 crosstalk 모델을 이용하여 입력 신호의 near-end와 터미네이션 임피던스 불일치와 레퍼런스 전압 신호의 far-end 커패시턴스 터미네이션이 crosstalk에 미치는 영향을 예측하고, 실험을 통해 예측 결과를 확인한다. 신호선으로는 가장 널리 사용되는 microstrip 구조를 사용하였으며 skin effect에 의한 손실 증가를 반영하였다.

식품 및 음식의 다량영양소 구성 성분에 따른 혈당 반응 연구 (Effects of macronutrients in mixed meals on postprandial glycemic response)

  • 박미현;정상진;심재은;장성희;남기선
    • Journal of Nutrition and Health
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    • 제51권1호
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    • pp.31-39
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    • 2018
  • 본 연구에서는 동일한 끼니에 섭취한 각 식품 및 음식의 영양성분 중 에너지에 기여하는 다량영양소인 탄수화물, 지방, 단백질과 식이섬유소가 혈당 반응에 어떠한 영향을 주는지를 알아보고자 하였다. 20대 성인 남녀를 대상으로 총 62가지의 단일 또는 여러 가지 단일 식품으로 구성된 혼합 식사 섭취 후 2시간 동안의 혈당을 측정하여 혈당곡 선하면적을 계산하였다. 그 결과 일반적으로 탄수화물 함량이 증가하면 혈당곡선하면적이 증가하였다. 그러나 탄수화물 이외에 식품 및 음식에 함유된 지방, 식이섬유소 등의 함량도 혈당곡선하면적에 영향을 준 것을 확인할 수 있었다. 탄수화물, 단백질, 지방, 식이섬유소의 영양성분이 혈당곡선하면적에 미치는 영향을 분석한 결과 탄수화물(${\beta}=37.18$, p < 0.0001)은 혈당곡선하면적을 유의적으로 증가시켰고, 지방 (${\beta}=-32.70$, p = 0.0054), 식이섬유소 (${\beta}=-32.01$, p = 0.0486)는 유의적으로 감소시켰으며, 단백질 (${\beta}=-12.93$, p = 0.1657)은 혈당 반응에 유의적인 영향을 미치지 않았다. 본 연구는 식품 및 음식의 영양성분 중 탄수화물 함량만이 아닌 지방, 식이섬유소가 서로 상호작용하여 혈당 반응에 영향을 미치는 것을 확인하여 의미가 크다.

Genetic Relationship of Gestation Length with Birth and Weaning Weight in Hanwoo (Bos Taurus Coreanae)

  • Hwang, J.M.;Choi, J.G.;Kim, H.C.;Choy, Y.H.;Kim, S.;Lee, C.;Kim, J.B.
    • Asian-Australasian Journal of Animal Sciences
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    • 제21권5호
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    • pp.633-639
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    • 2008
  • The genetic relationship of gestation length (GL) with birth and weaning weight (BW, WW) was investigated using data collected from the Hanwoo Experiment Station, National Institute of Animal Science, RDA, Republic of Korea. Analytical mixed models including birth year‐season, sex of calf, linear and quadratic covariates of age of dam (days) and linear covariate of age at weaning (days) as fixed effects were used. Corresponding restricted maximum likelihood (REML) and Bayesian estimates of variance components and heritability were obtained with two models; Model 1 included only direct genetic effect and Model 2 included direct genetic, maternal genetic and permanent environmental effect. All the genetic parameter estimates from REML were corresponding to the Bayesian estimates. Direct heritability estimates for GL, BW, and WW were 0.48, 0.33 and 0.25 by Model 1. From Model 2, direct and maternal heritability estimates were 0.38 and 0.03 for GL, 0.14 and 0.05 for BW, and 0.08 and 0.05 for WW. Genetic correlation estimates between direct and maternal effects were 0.05 for GL, 0.59 for BW, and 0.52 for WW. Estimates of direct genetic correlation between GL and BW (WW) were 0.44 (0.21). Positive genetic correlation of GL with BW and WW imply that selection for greater BW or WW would lead to prolonged gestation length.