• The Plant Pathology Journal
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• 제38권4호
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• pp.410-416
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• 2022

Erwinia amylovora, the causal agent of fire-blight disease in apple and pear trees, was first isolated in South Korea in 2015. Although numerous studies, including omics analyses, have been conducted on other strains of E. amylovora, studies on South Korean isolates remain limited. In this study, we conducted a comparative proteomic analysis of the strain TS3128, cultured in three media representing different growth conditions. Proteins related to virulence, type III secretion system, and amylovoran production, were more abundant under minimal conditions than in rich conditions. Additionally, various proteins associated with energy production, carbohydrate metabolism, cell wall/membrane/envelope biogenesis, and ion uptake were identified under minimal conditions. The strain TS3128 expresses these proteins to survive in harsh environments. These findings contribute to understanding the cellular mechanisms driving its adaptations to different environmental conditions and provide proteome profiles as reference for future studies on the virulence and adaptation mechanisms of South Korean strains.

• Journal of Microbiology and Biotechnology
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• 제14권1호
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• pp.90-96
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• 2004

A synthetic defined medium, fortified with amino acids, was developed for the stable production of the kringle fragments of human apolipoprotein(a) (apo(a)), rhLK68. Using a complex rich medium containing yeast extract and a high-cell-density fed-batch culture, the expression level of rhLK68 reached 17% of the total cellular protein, which corresponded to $5\;g\;l^{-1}$ of the culture. To replace the complex media with chemically defined media, several amino acids that positively affect cell growth and gene expression were chosen by a statistical method. The various combinations of the selected amino acids were tested for its fortifying effect on a minimal defined medium. When glutamine only was added, the overall expression level of rhLK68 reached 93% of the complex rich medium increasing the specific expression level by 22.4% and decreasing the cell growth by 24%. Moreover, the addition of glutamine resulted in a 2-fold increase in the concentration of rhLK68 in the culture broth, compared with the minimal defined medium. The synthetic defined media developed in this study could be generally applied to high-cell-density cultures of the recombinant Escherichia coli BL21(DE3), especially for the production of therapeutic proteins that require a strict quality control of the culture media and fermentation processes.

• BMB Reports
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• 제33권5호
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• pp.422-425
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• 2000

Thioltransferase (TTase), also known as glutaredoxin (Grx), is an enzyme catalyzing the reduction of a variety of disulfide compounds and acting as a cofactor for various enzymes such as ribonucleotide reductase. The Schizosaccharomyces pombe cells, exponentially grown in rich medium at $30^{\circ}C$, were shifted to $20^{\circ}C$ and $35^{\circ}C$. The yeast cells, shifted to $35^{\circ}C$, showed higher TTase activity than the cells continuously grown at $30^{\circ}C$, whereas the yeast cells, shifted to $20^{\circ}C$, gave lower TTase activity. The S. pombe cells, exponentially grown in minimal medium and shifted from $30^{\circ}C$ to $35^{\circ}C$ and $40^{\circ}C$, produced higher TTase activity. When the S. pombe cells were initially incubated in rich and minimal media at three different temperatures ($25^{\circ}C$, $30^{\circ}C$ and $35^{\circ}C$), they showed higher TTase activity at higher temperature. These results suggest that the TTase activity of S. pombe is regulated by temperature.

• Journal of Microbiology and Biotechnology
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• 제7권5호
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• pp.352-355
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• 1997

The promoter region of the pupA gene of Pseudomonas putida WCS358 was fused with the structural genes for bioluminescence (luxCDABE) from Vibrio fischeri, and the resulting fusion plasmid harbored by the WCS358 host. The pup-lux fusion gene was then used for quantitative analysis of the iron-dependence of pupA promoter activity. Factors affecting bioluminescence produced by the pup-lux bioreporter were found to be cell activity, iron-chelator concentrations, Fe(III) concentrations, and nutrient components. Light production rates of the pup-lux bioreporter were inversely dependent upon iron molecules when $FeCl_3$ concentrations were between $10^{-2}$ and 1 ${\mu}M$ in nutrient-poor minimal media, and between 0.1 and 10 mM in nutrient-rich complex media.

• KSBB Journal
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• 제13권2호
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• pp.214-219
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• 1998

Polymerase chain reaction(PCR) was conducted to obtain the gene encoding glucose oxidase(GOD) from Aspergillus niger(ATCC 2110) and the DNA sequence determined was coincided with published GOD sequence from A. niger. Recombinant transforming vector containing GOD and hygromycin B(hyg.B) resistant gene(hph) was constructed and used for further transformation of A. niger ATCC 2110. Selectivity of hyg.B against A. niger differed depending on which media were used i.e., nutrient-rich media such as potato dextrose agar(PDA) and complete medium(CM) showed only 50% growth inhibition at 400 $\mu$m ml$^-1$ of hyg.B while the minimal media inhibited mycelial growth completely at 200 $\mu$m ml$^-1$ of hyg.B. Twenty to sixty putative transformants were isolated from the hyg.B-containing minimal top agar, transferred successively onto alternating selective and nonselective media for a mitotic stability of hyg.B resistance and, then, single-spored. Among the stable transformants, the transformant(GOD1-6) grown by flask culture showed the considerable increase of extracellular GOD activity, which was estimated to the degree of 50% - 100% comparing to that of wild type. Transformation of tGOD1-6 was resulted from integration of the vectors into heterologous as well as homologous regions of the A. niger genome. Southern blot analysis revealed that there were two independent integrations of vector into fungal genome and one into the GOD gene due to homologous recombination. In addition, GOD activity and sodium gluconate production when tGOD1-6 was fed-batch fermented were enhanced 11 fold and 2.25 fold, respectively, compared to that of the wild type.

• 한국미생물·생명공학회지
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• 제33권3호
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• pp.222-225
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• 2005

Stimulatory effects of near infra-red (NIR) rays radiation have been studied within the limits of photosynthesis, phototaxis, and photodermatology. While most of these studies have been done by direct NIR radiation, we investigated the effects of the NIR rays-treated materials on microbial growth. NIR in wavelength of 1,400${\~}$1,700 nm was applied for different kind of materials. Under fast growing conditions in rich media, materials treated with the NIR rays or not did not show any differences in growth of microorganisms. However, under slow growing conditions in minimal media, data showed that NIR rays-treated cloths and hygienic bands affect negatively on the growth of bacteria (Salmonella enteritidis) and fungi (Candida albicans). In addition, it was estimated that the effect of NIR rays on bacterial growth is kept going on S. enteritidis.

• 생명과학회지
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• 제21권2호
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• pp.176-182
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• 2011

해양심층수는 깊이 200 m 정도 혹은 그 이상의 해수를 말한다. 해양심층수는 무기물질이 풍부하여 여러 분야 적용을 위해 많은 관심이 쏠리고 있다. 본 연구에서는 동해 양양 부근에서 취수한 해양심층수에서 배양된 쥐 해마신경세포의 ${\mu}$-아편양 수용체 발현에대한 영향을 조사하였다. 경도 800 및 1,000 심층수가 25% (v/v) 포함된 minimal essential media에서 해마신경세포를 배양해 대조군(증류수 첨가)과 비교하였다. 경도 800 및 1000심층수 첨가 배양액에서 배양된 신경세포 및 별아교세포에서 ${\mu}$-아편양 수용체의 면역반응 신호가 매우 증가했다. 흥미롭게도 신경세포보다 별아교세포에서 ${\mu}$-아편양 수용체의 면역반응 신호 증가가 더 뚜렷했다. 통계 분석시 경도 800 및 1000에서 배양된 별아교세포에서 ${\mu}$-아편양 수용체 군에 대한 상대적 강도가 약 4배 증가했다. 이런 증가는 통계적으로 매우 유의했다(p<0.001). 대조적으로 신경세포에선 이런 증가가 상대적으로 덜 뚜렷하였고, 경도 1000배양에서만 통계적으로 유의하였다(p<0.001). 이 결과들은 심층수가 신경세포 및 별아교세포에서 ${\mu}$-아편양 수용체의 발현을 항진 시킨다는 것을 나타내었다.

• Journal of Microbiology and Biotechnology
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• 제26권2호
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• pp.326-336
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• 2016

Saccharomyces cerevisiae is one of the most employed cell factories for the production of bioproducts. Although monomeric hexose sugars constitute the preferential carbon source, this yeast can grow on a wide variety of nitrogen sources that are catabolized through central nitrogen metabolism (CNM). To evaluate the effects of internal perturbations on nitrogen utilization, we characterized strains deleted or overexpressed in GLT1, encoding for one of the key enzymes of the CNM node, the glutamate synthase. These strains, together with the parental strain as control, have been cultivated in minimal medium formulated with ammonium sulfate, glutamate, or glutamine as nitrogen source. Growth kinetics, together with the determination of protein content, viability, and reactive oxygen species (ROS) accumulation at the single cell level, revealed that GLT1 modulations do not significantly influence the cellular physiology, whereas the nitrogen source does. As important exceptions, GLT1 deletion negatively affected the scavenging activity of glutamate against ROS accumulation, when cells were treated with H₂O₂, whereas Glt1p overproduction led to lower viability in glutamine medium. Overall, this confirms the robustness of the CNM node against internal perturbations, but, at the same time, highlights its plasticity in respect to the environment. Considering that side-stream protein-rich waste materials are emerging as substrates to be used in an integrated biorefinery, these results underline the importance of preliminarily evaluating the best nitrogen source not only for media formulation, but also for the overall economics of the process.

• 생명과학회지
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• 제18권11호
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• pp.1479-1484
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• 2008

해양심층수(deep seawater, DSW)는 청정성, 풍부한 무기물질 및 필수미량원소의 함유로 음료를 포함한 여러 분야에 응용하기 위하여 최근 많은 관심을 받고 있다. 본 연구실에서는 동해 양양 부근의 해저 1,100 m에서 취수하여 역삼투압 시스템으로 탈염과 농축을 한 심층수가 경도 600-1,000에서 배양한 흰쥐해마신경세포의 형태적 분화에 도움을 줌을 보고한 바 있다. 좀 더 구체적인 영향을 조사하기 위하여 본 연구에서는 경도 800 및 1,000 심층수가 25%(v/v) 포함된 minimal essential media에서 배양한 해마신경세포에서의 연접형성을 대조군(증류수 첨가)과 비교하였다. 경도 800 및 1000에서 자란 신경세포는 흥분성 연접후세포막의 신호전달복합체인 NRC/MASC 크러스터의 형성을 촉진하였다. 또한 연접전/후 구조가 밀접히 짝을 이룬 연접이 매우 현저히(p<0.01) 증가하였다. 이 결과는 심층수가 연접의 형성을 촉진하여 신경세포의 건강에 도움을 주는 것으로 해석된다.

• 생명과학회지
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• 제18권6호
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• pp.897-901
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• 2008

해양심층수(deep seawater, DSW)는 청정성과 무기물질의 풍부함 때문에 여러 분야에 응용하기 위하여 최근 많은 관심을 받고있다. 본 연구에서는 동해 양양 부근의 해저 1,100 m에서 취수하여 역삼투압 시스템으로 탈염과 농축을 한 심층수가 배양한 흰쥐해마신경세포의 형태적 분화에 미치는 영향을 조사하였다. 10%(v/v) fetal bovine serum이 첨가된 MEM 배지에서 키운 세포와 비교할 때 25%(v/v) DSW이 포함될 경우 배양 17시간째에는 차이가 없었다. 그러나 DIV3, 7, 14, 및 17에 관찰하면 경도 0 및 200의 DSW가 포함된 배지에서 자란 신경세포는 가지돌기의 수가 현저히 줄었다. 반면에 경도 600의 DSW에서 자란 신경세포는 그 가지돌기의 수가 대조군과 비슷하였으며, 경도 1000의 경우는 대조군에 비하여 거의 2배 증가하였다. 이 결과는 적당한 경도의 DSW는 신경세포의 성장 및 건강을 돕는 것으로 해석된다.