• Journal of Ginseng Research
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• 제43권3호
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• pp.482-487
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• 2019

Background: The mixed-cultivation of different Panax ginseng cultivars can cause adverse effects on stability of yield and quality. K-1 is a superior cultivar with good root shape and stronger disease resistance. DNA markers mined from functional genes are clearly desirable for K-1, as they may associate with major traits and can be used for marker-assisted selection to maintain the high quality of Korean ginseng. Methods: Five genes encoding pathogenesis-related (PR) proteins of P. ginseng were amplified and compared for polymorphism mining. Primary, secondary, and tertiary structures of PR5 protein were analyzed by ExPASy-ProtParam, PSSpred, and I-TASSER methods, respectively. A coding single nucleotide polymorphism (SNP)-based specific primer was designed for K-1 by introducing a destabilizing mismatch within the 3' end. Allele-specific polymerase chain reaction (PCR) and real-time allele-specific PCR assays were conducted for molecular discrimination of K-1 from other cultivars and landraces. Results: A coding SNP leading to the modification of amino acid residue from aspartic acid to asparagine was exploited in PR5 gene of K-1 cultivar. Bioinformatics analysis showed that the modification of amino acid residue changed the secondary and tertiary structures of the PR5 protein. Primer KSR was designed for specific discrimination of K-1 from other ginseng cultivars and landraces. The developed real-time allele-specific PCR assay enabled easier automation and accurate genotyping of K-1 from a large number of ginseng samples. Conclusion: The SNP marker and the developed real-time allele-specific PCR assay will be useful not only for marker-assisted selection of K-1 cultivar but also for quality control in breeding and seed programs of P. ginseng.

• The Plant Pathology Journal
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• 제38권6호
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• pp.572-582
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• 2022

Sheath blight disease caused by the necrotrophic, soilborne pathogen Rhizoctonia solani Kuhn, is the global threat to rice production. Lack of reliable stable resistance sources in rice germplasm pool for sheath blight has made resistance breeding a very difficult task. In the current study, 101 rice landraces were screened against R. solani under artificial epiphytotics and identified six moderately resistant landraces, Jigguvaratiga, Honasu, Jeer Sali, Jeeraga-2, BiliKagga, and Medini Sannabatta with relative lesion height (RLH) range of 21-30%. Landrace Jigguvaratiga with consistent and better level of resistance (21% RLH) than resistant check Tetep (RLH 28%) was used to develop mapping population. DNA markers associated with ShB resistance were identified in F₂ mapping population developed from Jigguvaratiga × BPT5204 (susceptible variety) using bulk segregant analysis. Among 56 parental polymorphic markers, RM5556, RM6208, and RM7 were polymorphic between the bulks. Single marker analysis indicated the significant association of ShB with RM5556 and RM6208 with phenotypic variance (R²) of 28.29 and 20.06%, respectively. Co-segregation analysis confirmed the strong association of RM5556 and RM6208 located on chromosome 8 for ShB trait. This is the first report on association of RM6208 marker for ShB resistance. In silico analysis revealed that RM6208 loci resides the stearoyl ACP desaturases protein, which is involved in defense mechanism against plant pathogens. RM5556 loci resides a protein, with unknown function. The putative candidate genes or quantitative trait locus harbouring at the marker interval of RM5556 and RM6208 can be further used to develop ShB resistant varieties using molecular breeding approaches.

• Journal of Plant Biotechnology
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• 제50권
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• pp.11-18
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• 2023

Manihot esculenta Crantz, commonly known as cassava, is a staple aliment that is a significant source of revenue for farmers. The embryogenic callus is crucial in the genetic engineering of various crop species, including cassava. Four cultivar cassava landraces from East Java were assessed for their ability to produce friable embryogenic callus (FEC) for protoplast isolation. In this study, four cassava cultivars; (Kaspro, Kuning, Gajah, and Gendruwo); were used to obtain FEC, which involved the culture of immature leaf lobes (ILLs) and apical buds (ABs) media containing MS supplemented with 33 μM picloram and 2 μM of CuSO₄ (M1) or MS supplemented with 50 μM 2,4-D and 2 μM CuSO₄ (M2). The highest FEC induction efficiency ranged from 72% to 57%, and the highest FEC number ranged from 4.7 to 3.7 with AB explants in media containing MS + 33 μM pilocram and 2 μM CuSO₄ (M1). On the other hand, the efficiency of somatic embryogenesis induction ranged from 67% to 53%, and the number ranged from 4.4 to 3.4. The efficiencies of FEC induction ranged from 48% to 42%, and the number ranged from 3.1 to 2.6 with AB explants in media containing MS + 50 μM 2,4-D and 2 μM CuSO₄ (M2); the efficiency of FEC induction ranged from 56% to 50%, and the value ranged from 3.6 to 2.4 with ILL explants. The FEC induction of the Gendruwo cultivar, which was examined using AB and ILL explants, demonstrated the lowest efficiency. Nevertheless, all four cultivars showed the ability to generate FEC, even though their effectiveness differed depending on the explant genotype and the applied media.

• 한국작물학회:학술대회논문집
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• 한국작물학회 2003년도 추계 학술발표회 요지
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• pp.236-237
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• 2003

• 한국작물학회:학술대회논문집
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• 한국작물학회 1999년도 춘계 학술대회지
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• pp.174-175
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• 1999

• 한국작물학회지
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• 제64권4호
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• pp.299-310
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• 2019

우리나라 밥쌀용 벼 품종의 협소한 유전적 다양성을 극복하기 위해 재래벼 26품종, 잡초벼 21품종, 국내 육성 24품종과 일본 육성 5품종 등 76품종을 공시하여 국내 고유 유전자원의 식미 특성을 평가하고 재래벼와 잡초벼 중 식미 특성이 우수한 유전자원을 선발하였다. 1. 재래벼와 잡초벼의 간장은 국내 품종 및 일본 품종 보다 큰 편이어서 도복에 약하였으나, 쌀 수량은 일본 품종보다 높았다. 2. 식미 특성은 유전자원군별로 유의적인 차이를 보였는데, 윤기치, 기대식미치, 물리·화학적 특성 및 식미관능평가에서 일본품종보다 식미 특성이 우수한 재래벼와 잡초벼 유전자원이 다수 탐색되었다. 3. 분자육종법과 식미관능검정 및 밥의 윤기치를 종합적으로 평가하여 재래벼인 상도, 왜벼와 잡초벼인 횡성앵미 3, 남제주앵미6, 완도앵미6 등 5개의 우수한 고유 유전자원을 선발하였다. 4. 완도앵미6은 전체 유전자원 중에서 기대식미치는 가장 낮았으나 밥맛과 윤기치가 가장 좋은 결과를 보여 새로운 핵심 육종소재로 기대되었다. 5. 밥맛과 윤기치 등 식미 특성을 전체적으로 고려할 때 재래벼와 잡초벼는 종자주권이 강조되는 현실에서 유전적 배경이 다양한 밥쌀용 품종 개발을 위한 고유 육종소재로서 가치가 매우 크다고 판단된다.

• 원예과학기술지
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• 제16권1호
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• pp.21-24
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• 1998

참외와 멜론의 다양성 분석을 위하여 RAPD 분석 최적조건과 군집분석하였다. 참외와 멜론계통의 DNA 추출은 0.5% SDS 방법이 가장 순수하고 많은 DNA를 얻을 수 있었으며 DNA 증폭시 최적 반응조건은 총 volum $15{\mu}L$ 중 DNA 10ng, Primer 270nM, dNTP $200{\mu}M$, dynazyme 0.3unit. 10x buffer $1.5{\mu}l$이였으며 나머지는 3차 증류수로 보충된다. PCR기기의 최적 setting은 DNA denaturation $94^{\circ}C$ 30초, primer annealing $39^{\circ}C$ 30초, DNA extension $72^{\circ}C$ 30초이며 최적 증폭 횟수는 40 cycle 이었다. 사용된 12개의 primer 만들어진 총 123개의 band 중 신뢰도가 높은 25개(20%)의 polymorphic band를 선발하여 이용하였으며 평균 polymorphic band 수는 2.1개로 나타났고, 그룹내 polymorphic band 수가 그룹간보다 적어 그룹내의 유전적변이가 적음을 보여주었다. 군집분석 결과 크게 참외와 멜론그룹으로 나뉘었고 멜론그룹은 다시 net melon 과 no-net melon으로 나뉘었으며 이러한 결과는 기존의 표현형질에 의한 분류와 일치하였다. 재래종 참외와 멜론 그룹은 8개의 marker에 의해 구분되었고 net melon 그룹과 no-net melon 그룹은 4개의 marker에 의해 구분되었다.

• 한국육종학회지
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• 제41권4호
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• pp.369-376
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• 2009

Cowpea might have been introduced from China to Korea and cultivated for several hundred years but it has never been a staple food crop in Korea. In this study, genetic diversity of 492 Korean cowpea landrace accessions that have passport information was estimated using six SSR markers. The mean of Weir's gene diversity was 0.665 from all accessions investigated in the study. Cowpea gene diversity of six local provinces in Korea was ranged from 0.370 in accessions of Gangwon to 0.680 in Jeonra provinces. Low gene diversity of the cowpea genepool of Gangwon province was probably derived from relatively few introductions. Especially SSR markers VM36 and VM39 seem to be good markers to distinguish the Gangwon accessions from others by occurring at a specific locus with higher than 78% of allele frequency. Except for the Gangwon province with the low genetic diversity, gene diversity of cowpea accessions from other provinces was ranged from 0.600 to 0.680 indicating no big differences among provinces. Distribution pattern of the allele frequencies was similar among the other provinces. This may reveal that Korean farmers might exchange cowpea seeds easily with even their neighbors with geographical barriers. A core collection, 100 landraces, ca. 20% of base collection, was developed at the 70% of a similarity coefficient level using random sampling approaches after stratification of the entire landrace collection based on the phenetic dendrogram. The variability of SSR in the base and core collections of Korean cowpea landrace was compared by calculating Weir's gene diversity. The mean of Weir's gene diversity of the core was 0.707 while that of the base collection was 0.665. The higher diversity index in the core collection indicates that it maintains the initial variability and well represents the base collection. The core collection included one of determinate accession (IT 216155) and two of no branching type accessions (IT 103959 and IT 161024). The core collection could be used to guide more efficient management and utilization of the entire collection. This core collection should be revised periodically as additional accessions are collected and further characterization is conducted.

• 한국작물학회:학술대회논문집
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• 한국작물학회 2017년도 9th Asian Crop Science Association conference
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• pp.74-74
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• 2017

Wheat is one of the world's most important crop species. Recently, abnormal climate changes directly influence on the significant reduction of wheat productivity in the world. This threaten allow breeders to find new genetic resources. Wheat is one of the widely grown crops in the world. Individual cultivars / germplasm is adapted in that region where the climate is unique to each other. Therefore, introducing new genetic resources which was good in one place may better perform in another region. In this study, we evaluated germplasm in Korean environment and measured numerous agro-morphological characteristics. Information that are provided by the National Agrobiodiversity Center (Jeonju, Korea) and National Plant Germplasm System (Aberdeen, USA) were included in the analysis. Cluster analysis was performed using the unweight pair-group method of averages. The results of PCA indicated principal discriminatory characteristics of wheat landraces and varieties. Significant differences indicated high variability among the quantitative traits. Cluster analysis results showed that the groups were divided by geological climate condition. The preliminary evaluation of germplasms in Korean environment would help to develop wheat cultivars via providing useful genetic traits that are resided in alien germplasms.

• 한국약용작물학회지
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• 제18권3호
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• pp.180-185
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• 2010

We investigated genetic diversity among and within the populations of cultivated ginseng (Panax ginseng C. A. Meyer ) using SRAP profiles. A total of 24 ginseng plants were sampled from the three populations (two from China, one from Korea). Since all these populations are previously shown closely related to each other assister groups, we used Panax quinquefolium L. and wild ginseng as a reference species, which is not "within the sister group". All individuals from the three populations were screened with a total of 36 primer pairs with 26 primers generated from 328 SRAP bands of DNA gels. The mean gene diversity ($H_E$) was estimated to be 0.057 within populations (range 0.032-0.067), and 0.086 at the species level. The genetic differentiation (Gst=0.31) indicates that genetic variation apportioned 30% among populations and 70% within populations. Generally, the result of this study indicates that ginseng contains high molecular variation in its populations.