• Animal Systematics, Evolution and Diversity
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• v.37 no.3
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• pp.219-224
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• 2021

A hesionid species, Leocratides kimuraorum Jimi, Tanaka and Kajihara, 2017 is newly reported from the sublittoral zones (100 m depth) of the Korean coasts. This species is characterized by lateral antennae as long as the palps, peristomial membrane without papillose, peristomial dorsolateral tubercles with two round marginal lobes, and pharyngeal with terminal papillae. The intra-specific genetic distance among the cytochrome c oxidase subunit I(COI) sequences of L. kimuraorum specimens from Japan (type locality) and Korea (this study) was in the range of 0.002-0.005. The inter-specific genetic distance between L. kimuraorum and other hesionid species were 0.166-0.307. The present study is the first record of Leocratides species in Korean fauna. This paper also provides a morphological description and photographs of L. kimuraorum, with partial sequences of the mitochondrial COI based on Korean specimens.

• The Korean Journal of Mycology
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• v.52 no.2
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• pp.135-143
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• 2024

Lindera obtusiloba Blume, a shrub prevalent in the understory vegetation of the deciduous forests in East Asia and Korea, is known for its pharmacological properties, including antioxidant, anti-allergic, and anti-inflammatory activities. Endophytic fungi were isolated from surface-sterilized twigs and leaves of L. obtusiloba collected from Samcheok-si and Jecheon-si in Korea. The fungal strains were identified based on their morphological characteristics and molecular analyses using DNA markers such as internal transcribed spacer, large subunit rDNA, β-tubulin, chitin synthase, and glyceraldehyde-3-phosphate dehydrogenase. Here, we report two new records of endophytic fungi isolated from L. obtusiloba in Korea: Colletotrichum citricola and Valsa ceratophora. These results enhance our understanding of the diversity of endophytic fungi in L. obtusiloba and contribute to enhancing our knowledge of fungal biodiversity in Korea.

• Korean Journal of Ecology and Environment
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• v.55 no.4
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• pp.274-284
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• 2022

Through sample-size-based rarefaction analyses, we tried to suggest the appropriate degree of sample concentration and sub-sample extraction, as a way to estimate more accurate zooplankton species diversity when assessing biodiversity. When we collected zooplankton from three reservoirs with different environmental characteristics, the estimated species richness (S) and Shannon's H' values showed different changing patterns according to the amount of sub-sample extracted from the whole sample by reservoir. However, consequently, their zooplankton diversity indices were estimated the highest values when analyzed by extracting the largest amount of sub-sample. As a result of rarefaction analysis about sample coverage, in the case of deep eutrophic reservoir (Juam) with high zooplankton species and individual numbers, it was analyzed that 99.8% of the whole samples were represented by only 1 mL of sub-sample based on 100 mL of concentrated samples. On the other hand, in Soyang reservoir, which showed very small species and individual numbers, a relatively low representation at 97% when 10 mL of sub-sample was extracted from the same amount of concentrated sample. As such, the representation of sub-sample for the whole zooplankton sample varies depending on the individual density in the sample collected from the field. If the degree of concentration of samples and the amount of sub-sample extraction are adjusted according to the collected individual density, it is believed that errors that occur when comparing the number of species and diversity indices among different water bodies can be minimized.

• Korean Journal of Ecology and Environment
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• v.42 no.1
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• pp.19-25
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• 2009

The effects of artificial floating island on the changes in phytoplankton and zooplankton community structure were investigated monthly from September 2006 to May 2007 in Shingu reservoir. The total cell number of phytoplankton under the artificial floating island was three times less than those of control (without artificial floating island). The dominant species of phytoplankton were Lyngbya sp. on September, Cryptomonas sp. from October to January, Aulacoseira granulata on February and Oscillatoria sp. from March to May at lake water. Cyanophyta was dominated from February to March at lake water but it was dominated from March at artificial floating island area. The total individual number, species number of zooplankton and species diversity of phytoplankton and zooplankton under the artificial floating island were higher than those of lake water.

• Korean journal of applied entomology
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• v.46 no.3
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• pp.363-373
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• 2007

To evaluate environment of farm lands using indicator insects and evaluation indices, the insect abundance of which is one of the major criteria for the evaluation of agricultural environment of farm land in urban areas and industrial complex, three sites (Ansan, Daesan, Suncheon) were designated and monitored from 2004 to 2006. The flora of agricultural land was more than urban areas and industrial complex of that in three sites. Soil, water and air pollution of urban areas and industrial complex were more serious than those of agricultural land in three sites. Overall population of insects were high from June to August in the surveyed three sites. Collected insects in agricultural land were 12 order, 106 family and 166 species, those in urban areas were 11 order, 102 family and 148 species, and in industrial complex were 11 order, 100 family and 152 species. Species and population belonging to Coleoptera was dominant in the surveyed sites. The insect diversity indices of farm land were 2.36 in agricultural land, 1.92 urban areas and industrial complex. And agricultural environment of agricultural land was good, urban areas was common and industrial complex was poor. Based on the major criteria of evaluation items, the criteria were selected as diversity index over 2.1, insect indicator Pheropsophus javanus in agricultural land, diversity index 1.5-2.0, insect indicator Nephotettix cincticeps in urban areas, diversity index below 1.5, insect indicator Pagria signata in industrial complex.

• Journal of Microbiology and Biotechnology
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• v.26 no.1
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• pp.197-206
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• 2016

Listeria monocytogenes is a foodborne pathogen of considerable genetic diversity with varying pathogenicity. Initially, we found that the strain M7 was far less pathogenic than the strain Lm850658 though both are serovar 4a strains belonging to the lineage III. Comparative genomic approaches were then attempted to decipher the genetic basis that might govern the strain-dependent pathotypes. There are 2,761 coding sequences of 100% nucleotide identity between the two strains, accounting for 95.7% of the total genes in Lm850658 and 92.7% in M7. Lm850658 contains 33 specific genes, including a novel 20K prophage whereas strain M7 has 130 specific genes, including two large prophages (38K and 44K). To examine the roles of these specific prophages in pathogenicity, the 20K and 38K prophages were deleted from their respective strains. There were virtually no differences of pathogenicity between the deletion mutants and their parent strains, although some putative virulent factors like VirB4 are present in the 20K region or holin-lysin in the 38K region. In silico PCR analysis of 29 listeria genomes show that only strain SLCC2540 has the same 18 bp integration hotspot as Lm850658, whereas the sequence identity of their 20K prophages is very low (21.3%). The 38K and 44K prophages are located in two other different hotspots and are conserved in low virulent strains M7, HCC23, and L99. In conclusion, the 20K and 38K prophages of L. monocytogenes serovar 4a strains Lm850658 and M7 are not related to virulence but contribute to genetic diversity.

• Journal of Life Science
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• v.24 no.7
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• pp.707-712
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• 2014

We evaluated the phenetic relationships within six taxa of genus Oxalis L. in Korea with random amplified polymorphic DNA (RAPD) markers. Ten primers produced 125 bands for six taxa, and the mean number of bands per primer was 12.5. Across the six taxa, 121 (96.8%) bands were polymorphic, and only four were monomorphic. The mean number of RAPD phenotypes across the six taxa varied from 3.6 (O. stricta and O. corymbosa) to 4.8 (O. corniculata for. rubrifolia). In a simple measure of intraspecies variability according to the percentage of polymorphic bands, O. stricta and O. corymbosa exhibited the lowest variation (28.8%), and O. corniculata for. rubrifolia showed the highest (38.4%). A mean of 32.7% of the loci was polymorphic within taxa. The total interspecies genetic diversity ($H_T$) and intraspecies genetic diversity ($H_S$) was 0.362 and 0.122, respectively. On a per-locus basis, the proportion of total genetic variation due to differences among species ($G_{ST}$) was 0.663. This indicates that about 66.3% of the total variation was among species. The node of O. stricta and O. corniculata for. rubrifolia was strongly supported, with a high bootstrap value in the NJ tree and sistered with O. corniculata. According to RAPD analysis, the number of chromosomes was not congruent with a phenetic relationship.

• Korean Journal of Plant Resources
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• v.16 no.1
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• pp.8-14
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• 2003

This study was aimed to obtain basic information on the characteristics of local cultivars of burdock(Arctium lappa L.) grown in Yeong-Nam region. The characteristics of seeds were shown a remarkable diversity among the local cultivars. Germination rate was the highest at 25$^{\circ}C$ and Munkyong' as the highest germination rate(42.2%) at l0$^{\circ}C$ respectively. In Youchon' and 'Chilgok', about 10％ was bolted but the other was rarely or none. The range of root length was 62∼77cm and lateral root number was maximum 5.5('Koryong') and minimum 0.3('Songju). 'Chongdo I' contents 14.2mg/100g of tannin in root and 'Kyongsan', 'Koryong', 'kyongiu',’ Kumi' and 'Haman' taste not bitter in leaves.

• Journal of Microbiology and Biotechnology
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• v.13 no.6
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• pp.942-948
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• 2003

Soil samples were obtained from 5 sites contaminated with polycyclic aromatic hydrocarbons (PAHs). These soil samples were cultured in using phenanthrene as a sole carbon and energy source, and 36 strains of phenanthrene-degrading bacteria were isolated from 3 sites. Most of them degraded 500 ppm of phenanthrene within 8 to 10 days, and these isolates could degrade a few other PAHs other than phenanthrene. Their genotypes were determined by restriction digests of the l6S rRNA genes [amplified ribosomal DNA restriction analysis (ARDRA)]. It was found that all the phenanthrene degrading isolates were included in 4 ARDRA types, and they showed a strict site endemism. l6S rDNAs of 12 strains selected from different sites were sequenced, and they were all confirmed as Sphingomonas strains. Their l6S rDNA sequences were compared for phylogenetic analysis; their sequence showed a similar result to ARDRA typing, thus indicating that these heterotrophic soil bacteria are not regionally mixed. In addition, it was found that the microbial diversity among sampling sites could be monitored by l6S rDNA PCR-RFLP pattern alone, which is simpler and easier to perform, without l6S rDNA sequence analysis.

• Animal Systematics, Evolution and Diversity
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• v.31 no.4
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• pp.284-295
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• 2015

Two new species of Leptochelia Dana, 1849 are described from the western coast of Korea. Leptochelia grandidentata n. sp. is similar to L. itoi and L. lusei characterized by pleonites 4 and 5 of subequal lengths and a uropod endopod with 4 articles but differentiated by a cheliped fixed finger longer than the dactylus and with 4 teeth along the incisive margin, a maxilliped basis with 4 distal setae, and pereopod 1 propodus that is much longer than the combined length of unguis and dactylus. Leptochelia suhi n. sp. shares some features of L. myora with the first article of the uropod endopod longer than the second article and a maxilliped endite with 3 spiniform distal setae but can be differentiated by the cephalothorax being longer than the pleon, the relatively longer antennule article 3 compared to article 2, and the cheliped fixed finger with 3 robust teeth along the incisive margin. In this study, full descriptions of L. grandidentata and L. suhi are given, and a comparison with closely related species belonging to the ‘dubia/savignyi group’ is tabulated and discussed.