Validation of Suitable Zooplankton Enumeration Method for Species Diversity Study Using Rarefaction Curve and Extrapolation
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Hye-Ji Oh
(Department of Environmental Science and Engineering, Kyung Hee University)
Yerim Choi (Department of Environmental Science and Engineering, Kyung Hee University) Hyunjoon Kim (Department of Environmental Science and Engineering, Kyung Hee University) Geun-Hyeok Hong (Department of Environmental Science and Engineering, Kyung Hee University) Young-Seuk Park (Department of Biology, Kyung Hee University) Yong-Jae Kim (Department of Life Science, Daejin University) Kwang-Hyeon Chang (Department of Environmental Science and Engineering, Kyung Hee University) |
1 | Cairns, J., P.V. McCormick and B.R. Niederlehner. 1993. A proposed framework for developing indicators of ecosystem health. Hydrobiologia 263:1-44. DOI |
2 | Chakraborty, J., K. Palit and S. Das. 2022. Metagenomic approaches to study the culture-independent bacterial diversity of a polluted environment-a case study on north-eastern coast of Bay of Bengal, India, p. 81-107. In: Microbial Biodegradation and Bioremediation (Das, S. and H.R. Dashi, eds.). Elsevier, Amsterdam. |
3 | Chao, A. and L. Jost. 2012. Coverage-based rarefaction and extrapolation: standardizing samples by completeness rather than size. Ecology 93: 2533-2547. DOI |
4 | Chao, A., N.J. Gotelli, T.C. Hsieh, E.L. Sander, K.H. Ma, R.K. Colwell and A.M. Ellison. 2014. Rarefaction and extrapolation with Hill numbers: a framework for sampling and estimation in species diversity studies. Ecological Monographs 84: 45-67. DOI |
5 | Cho, G.S. 1993. Illustrated book for Korean freshwater zooplankton. Academy book, Seoul. pp. 208-354. |
6 | Delang, C.O. and W.M. Li. 2013. Species Richness and Diversity, p. 39-66. In: Ecological Succession on Fallowed Shifting Cultivation Fields. Springer, Dordrecht. |
7 | procedures and pitfalls in the measurement and comparison of species richness. Ecology Letters 4: 379-391. |
8 | Hill, M.O. 1973. Diversity and evenness: a unifying notation and its consequences. Ecology 54(2): 427-432. DOI |
9 | Hsieh, T.C., K.H. Ma and A. Chao. 2016. iNEXT: an R package for rarefaction and extrapolation of species diversity (Hill numbers). Methods in Ecology and Evolution 7: 1451-1456. DOI |
10 | Margalef, R. 1958. Information theory in biology. General Systems Yearbook 3: 36-71. |
11 | McGlinn, D.J., X. Xiao, F. May, N.J. Gotelli, T. Engel, S.A. Blowes, T.M. Knight, O. Purschke, J.M. Chase and B.J. McGill. 2018. Measurement of biodiversity (MoB): a method to separate the scale-dependent effects of species abundance distribution, density, and aggregation on diversity change. Methods in Ecology and Evolution 10: 258-269. |
12 | McNaughton, S.J. 1967. Relationships among functional properties of Californian grassland. Nature 216(5111): 168-169. DOI |
13 | Mizuno, T. and E. Takahashi. 1991. An illustrated guide to freshwater zooplankton in Japan, pp. 1-305. Tokai University press, Tokyo. |
14 | NIBR. 2019. National species list of Korea - II. Vertebrates.Invertebrates.Protozoans. National Institute of Biological Resources, Incheon, Korea. |
15 | NIER. 2017. Biomonitoring Survey and Assessment Manual. National Institute of Environmental Research, Incheon, Korea. |
16 | NIER. 2019. Guideline for estuary aquatic ecosystem survey and health assessment. National Institute of Environmental Research, Incheon, Korea. |
17 | Oh, H.J., Y.J. Chae, D. Ku, Y.J. Kim, J.H. Wang, B. Choi, C.W. Ji, I.S. Kwak, Y.S. Park, G.S. Nam, Y.J. Kim and K.H. Chang. 2020. A comparative study on the information of zooplankton community based on towing type and depth in the lake ecosystems. Korean Journal of Ecology and Environment 53: 365-373. DOI |
18 | Oh, H.J., M.H. Jang, J.H. Kim, Y.J. Kim, S.H. Lim, D.H. Won, J.S. Moon, S. Kwon and K.H. Chang. 2022. Comparative analysis of diversity characteristics (γ-, α-, and β-diversity) of biological communities in the Korean Peninsula estuaries. Korean Journal of Ecology and Environment 55: 84-98. DOI |
19 | Pielou, E.C. 1975. Ecological diversity. Wiley, New York. |
20 | R Core Team. 2022. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/. |
21 | Shannon, C.E. 1948. A mathematical theory of communication. The Bell System Technical Journal 27(3): 379-423. DOI |
22 | Simpson, E.H. 1949. Measurement of diversity. Nature 163(4148): 688-688. DOI |
23 | Soininen, J., S. Passy and H. Hillebrand. 2012. The relationship between species richness and evenness: a meta-analysis of studies across aquatic ecosystems. Oecologia 169: 803-809. DOI |
24 | Wang, L., L. Jin, B. Xue, Z. Wang and Q. Peng. 2019. Characterizing the bacterial community across the gastrointestinal tract of goats: Composition and potential function. Microbiologyopen 8(9): e00820. |
25 | Willis, A.D. 2019. Rarefaction, alpha diversity, and statistice. Frontiers in Microbiology 10: 2407. DOI |
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