• 제목/요약/키워드: j-deletion

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클라우드 네이티브 환경에서 네트워킹 및 보안을 위한 eBPF 기술 동향 (eBPF Technology Trends for Networking and Security in Cloud-native)

  • 신용윤;신지수;박철희;박종근
    • 전자통신동향분석
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    • 제37권5호
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    • pp.62-69
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    • 2022
  • In a situation where applications determine business competitiveness, they cannot respond to varying customer requirements without the cloud's flexibility and scalability. Companies have begun seeking ways to enjoy the advantages of the cloud fully, and the concept of "Cloud Native" is emerging as a solution to the problem. Cloud Native is now a target of interest in the market. Microservice and serverless functions can play a vital role in cloud-native architecture. Microservice arranges applications into various independent services, each offering certain functionality through mutual networking. eBPF is attracting attention as a cloud-native networking solution that quickly supports microservice features that repeat creation/deletion. This study identifies the characteristics of eBPF-based networking and evaluates cloud-native networking and secure networking using eBPF.

Impact of HIV-1 subtypes on gross deletion in the nef gene after Korean Red Ginseng treatment

  • Cho, Young-Keol;Kim, Jung-Eun;Lee, Jinny
    • Journal of Ginseng Research
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    • 제46권6호
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    • pp.731-737
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    • 2022
  • Background: The number of primary human immunodeficiency virus (HIV)-1 non-B subtype infections (non-B) and that of reports regarding the differences in the pathogenesis of subtype B and non-B infections are increasing. However, to the best of our knowledge, there have been no reports on gross deletion in the nef gene (g∆nef) in non-B infections. Methods: To determine whether there is a difference in the change in CD4+ T cells after treatment with Korean Red Ginseng (KRG) between patients with subtype B and non-B infections, we retrospectively analyzed and compared the annual decrease in CD4+ T cells (AD) and the proportion of g∆nef in 77 patients who were followed for more than 10 years in the absence of combination antiretroviral therapy. Results: Overall, AD was significantly faster in patients with non-B infections than in those with subtype B infections. Survival analysis showed that the survival probability was significantly higher in subtype B than in non B-infected patients. These differences mainly resulted from significant differences in the amount of KRG and age. In the patients treated with KRG, there was a significant correlation between the amount of KRG and the AD in both subtypes. Interestingly, there was a significant correlation between the amount of KRG and the proportion of g∆nef in patients infected with subtype B, but not in those infected with non-B. The same phenomenon was observed when the KRG dose was adjusted. Conclusion: Our results suggest that non-B may be biologically more stable than subtype B.

An Acoustic Study on the Pronunciation of English [kwJ Sequences by Korean EFL Students

  • Kim, Jung-Eun;Cho, Mi-Hui
    • 음성과학
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    • 제9권1호
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    • pp.193-206
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    • 2002
  • The aim of this study is to find out how the labiovelar onglide /w/ in English kwV sequences that have minimal pairs with kV sequences is pronounced differently among Korean EFL learners based on acoustic evidence. This study tries to identify /w/ sound in English kwV sequences through spectrograms and to examine the duration ratios of each segment in kwV words to compare the patterns of an English native speaker with those of Korean speakers of English. In spectrographic analyses, the complete deletion of /w/ and partial pronunciation of /w/ dubbed [$k^{w}$] were identified as well as the targetappropriate production of /w/. The general production patterns with respect to the duration ratios in English [kw] sequence words showed that the subjects who produced /w/ had similar ratio patterns that the native speaker had in that the vowel duration ratio in kwV sequences was shorter than that in kV sequences. By contrast, the subjects who deleted [w] had a long ratio of the onset [$k^{h}$] while the speaker with a partial pronunciation of /w/ had a long ratio of the following vowel.

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Positional Cloning and Phenotypic Characterization of a New Mutant Mouse with Neuronal Migration Abnormality

  • Park, Chankyu;Ackerman, Susan-L
    • 한국동물번식학회:학술대회논문집
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    • 한국동물번식학회 2001년도 발생공학 국제심포지움 및 학술대회 발표자료집
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    • pp.14-17
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    • 2001
  • Positional cloning (map-based cloning) of mutations or genetic variations has been served as an invaluable tool to understand in-vivo functions of genes and to identify molecular components underlying phenotypes of interest. Mice homozygous for the cerebellar deficient folia (cdf) mutation are ataxic, with cerebellar hypoplasia and abnormal lobulation of the cerebellum. In the cdf mutant cerebellum approximately 40% of Purkinje cells are ectopically located within the white matter and the inner granule cell layer (IGL). To identify the cdf gene, a high-resolution genetic map for the cdf-gene-encompassing region was constructed using 1997 F2 mice generated from C3H/HeSnJ-cdf/cdf and CAST/Ei intercross. The cdf gene showed complete linkage disequilibrium with three tightly linked markers D6Mit208, D6Mit359, and D6Mit225. A contig using YAC, BAC, and P1 clones was constructed for the cdf critical region to identify the gene. A deletion in the cdf critical region on chromosome 6 that removes approximately 150kb of DNA was identified. A gene associated with this deletion was identified using cDNA selection. cdf mutant mice with the transgenic copy of the identified gene restored the brain abnormalities of the mutant mice. The positional cloning of cdf gene provides a good example showing the identification of a gene could lead to finding a new component of important molecular pathways.

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A Novel Node Management in Hadoop Cluster by using DNA

  • Balaraju. J;PVRD. Prasada Rao
    • International Journal of Computer Science & Network Security
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    • 제23권9호
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    • pp.134-140
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    • 2023
  • The distributed system is playing a vital role in storing and processing big data and data generation is speedily increasing from various sources every second. Hadoop has a scalable, and efficient distributed system supporting commodity hardware by combining different networks in the topographical locality. Node support in the Hadoop cluster is rapidly increasing in different versions which are facing difficulty to manage clusters. Hadoop does not provide Node management, adding and deletion node futures. Node identification in a cluster completely depends on DHCP servers which managing IP addresses, hostname based on the physical address (MAC) address of each Node. There is a scope to the hacker to theft the data using IP or Hostname and creating a disturbance in a distributed system by adding a malicious node, assigning duplicate IP. This paper proposing novel node management for the distributed system using DNA hiding and generating a unique key using a unique physical address (MAC) of each node and hostname. The proposed mechanism is providing better node management for the Hadoop cluster providing adding and deletion node mechanism by using limited computations and providing better node security from hackers. The main target of this paper is to propose an algorithm to implement Node information hiding in DNA sequences to increase and provide security to the node from hackers.

Effects of Changes in Glycosylation Sites on Secretion of Recombinant Human Erythropoietin in Cultured CHO Cells

  • Lee, H. G;Lee, P. Y.;Lee, Y. K.;Kim, S. J.;H. K. Chung;M. K. Seo;Park, J. K.;K. S. Min;W. K. Chang
    • 한국가축번식학회지
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    • 제27권4호
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    • pp.299-307
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    • 2003
  • The effects of additions/deletions in glycosylated residues of recombinant human EPO (rhEPO) produced in CHO-K1 on their secretion were examined. hEPO cDNA was amplified from human liver mRNA and cloned into the pCR2.1 TOPO. Using overlapping-extension site-directed mutagenesis method, glycosylation sites at 24th, 38th, 83rd, and 126th were respectively or accumulatively removed by substituting its asparagine (or serine) with glutamine. To add novel glycosylation sites, 69 and 105th leucine was mutated to asparagine. Mutant and wild type rhEPO constructs were cloned into the pcDNA3 expression vector with CMV promoter and transfected into CHO cell line, CHO-K1, to produce mutant rhEPO mutant rhEPO proteins. Enzyme-linked immunosorbant assay (ELISA) and Western analysis with monoclonal anti-EPO antibody were performed using supernatants of the cultures showing transient and stable expressions respectively. Addition of novel glycosylation reduced rhEPO secretion dramatically while deletion mutants had little effect except some double deletion mutants ($\Delta$24/83 and $\Delta$38/83) and triple mutant ($\Delta$24/38/83). This fact suggests that not single but combination of changes in glycosyl groups affect secretion of rhEPO in cell culture, possibly via changes in their conformations.

Development of Movable Detection System for Efficiency Measurement in 3-PM Liquid Scintillation Counting

  • Hwang, H-Y;Kwak, S.I;Cho, Y.H;Byun, J.I;Lee, H.Y;Seo, J.S;Kwak, J.Y;Lee, J.M;Lee, K.B;Park, T.S;Chung, K.H;Lee, C.W
    • Nuclear Engineering and Technology
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    • 제35권2호
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    • pp.165-170
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    • 2003
  • We developed an improved 3-PM liquid scintillation counting (3-PM LSC) method in which three detectors can be displaced to back and forth directions, and a data acquisition system being able to provide the values for all parameters required for the method. The detectors are entirely located in a 20-mm lead chamber of an inner diameter of 500 mm. A saw-toothed gear ties up all detectors so as to move them uniformly, up to 50 mm with unit of 1 mm. The data acquisition system was designed in an integrated circuit to perform the necessary works such as fast amplification, discrimination, coincidence and logic analysis. It generates values of nine parameters among twelve's generated in the 3-PH LSC method. The dead time of each counting channel is of extending type, valving from 10 to 100 $mutextrm{s}$. We measured the TDCR values with an unquenched liquid scintillation source 1"C by displacing the detectors with a step of 2.5 mm away from counting vial. Their values were derived on the range from 0.9 to 0.6. The extent is three times wider than those regions observed by applying the defocalization technique.ique.

돼지 Melanocortin Receptor 1(MC1R) 대립유전자 3의 신규 유전변이 탐색 (Detection of Novel Genetic Variations of the MG1R * 3 Allele in Pig(Sus scrofa))

  • 조인철;정용환;정진관;성필남;오운용;고문석;김병우;이정규;전진태
    • Journal of Animal Science and Technology
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    • 제46권1호
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    • pp.1-6
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    • 2004
  • 본 연구는 MCIR$^*$3 allele의 돼지에 있어서 유전적 변이를 관찰하기 위하여 수행하였다. 일반적으로 흑모색 바탕에 백색반점이나 백색띠를 갖고 있는 돼지의 MCIR 유전자의 유전자형은 E$^{D2}$로 나타낸다. 우성 백색계통의 E$^P$ 유전자형은 우성 흑모색 계통의 E$^{D2}$ 유전자와 frameshift mutation 관계가 있다. 돼지 MCIR 전체 번역지역을 증폭하기 위하여 oligonucleotide primer률 제작하여 PCR을 수행 하였다. 그 결과 길이가 963${\sim}$966 base pairs인 돼지 MCIR 유전자의 전체번역지역을 포함하는 산물을 얻었다. 이들 번역부위의 염기서열 결정하고 이들을 Clusta1 W 프로그램을 이용하여 정렬한 결과 23번 코돈{nt68)에서 Hampshire와 제주 재래혹돈은 염기 시토신(cytosine)이 3 개 그리고 Birl‘shire의 경우 염기 시토신(cytosine)이 2개 결실되어 있었다. 그 외에 3개의 missense mutations과 하나의 frameshift mutation이 발견되었다.

Genetic defects in the nef gene are associated with Korean Red Ginseng intake: monitoring of nef sequence polymorphisms over 20 years

  • Cho, Young-Keol;Kim, Jung-Eun;Woo, Jun-Hee
    • Journal of Ginseng Research
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    • 제41권2호
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    • pp.144-150
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    • 2017
  • Background: The presence of gross deletions in the human immunodeficiency virus nef gene ($g{\Delta}nef$) is associated with long-term nonprogression of infected patients. Here, we investigated how quickly genetic defects in the nef gene are associated with Korean Red Ginseng (KRG) intakein 10 long-term slow progressors. Methods: This study was divided into three phases over a 20-yr period; baseline, KRG intake alone, and KRG plus highly active antiretroviral therapy (ART). nef gene amplicons were obtained using reverse transcription polymerase chain reaction (PCR) and nested PCR from 10 long-term slow progressors (n = 1,396), and nested PCR from 36 control patients (n = 198), and 28 ART patients (n = 157), and these were then sequenced. The proportion of $g{\Delta}nef$, premature stop codons, and not in-frame insertion or deletion of a nucleotide was compared between three phases, control, and ART patients. Results: The proportion of defective nef genes was significantly higher in on-KRG patients (15.6%) than in baseline (5.7%), control (5.6%), on-KRG plus ART phase (7.8%), and on-ART patients (6.6%; p < 0.01). Small in-frame deletions or insertions were significantly more frequent among patients treated with KRG alone compared with controls (p < 0.01). Significantly fewer instances of genetic defects were detected in samples taken during the KRG plus ART phase (7.8%; p < 0.01). The earliest defects detected were $g{\Delta}nef$ and small in-frame deletions after 7 mo and 67 mo of KRG intake, respectively. Conclusion: KRG treatment might induce genetic defects in the nef gene. This report provides new insight into the importance of genetic defects in the pathogenesis of AIDS.

Development of a Reporter System Monitoring Regulated Intramembrane Proteolysis of the Transmembrane bZIP Transcription Factor ATF6α

  • Kim, Jin-Ik;Kaufman, Randal J.;Back, Sung Hoon;Moon, Ja-Young
    • Molecules and Cells
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    • 제42권11호
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    • pp.783-793
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    • 2019
  • When endoplasmic reticulum (ER) functions are perturbed, the ER induces several signaling pathways called unfolded protein response to reestablish ER homeostasis through three ER transmembrane proteins: inositol-requiring enzyme 1 (IRE1), PKR-like ER kinase (PERK), and activating transcription factor 6 (ATF6). Although it is important to measure the activity of ATF6 that can indicate the status of the ER, no specific cell-based reporter assay is currently available. Here, we report a new cell-based method for monitoring ER stress based on the cleavage of $ATF6{\alpha}$ by sequential actions of proteases at the Golgi apparatus during ER stress. A new expressing vector was constructed by using fusion gene of GAL4 DNA binding domain (GAL4DBD) and activation domain derived from herpes simplex virus VP16 protein (VP16AD) followed by a human $ATF6{\alpha}$ N-terminal deletion variant. During ER stress, the GAL4DBD-VP16AD(GV)-$hATF6{\alpha}$ deletion variant was cleaved to liberate active transcription activator encompassing GV-$hATF6{\alpha}$ fragment which could translocate into the nucleus. The translocated GV-$hATF6{\alpha}$ fragment strongly induced the expression of firefly luciferase in HeLa Luciferase Reporter cell line containing a stably integrated 5X GAL4 site-luciferase gene. The established double stable reporter cell line HLR-GV-$hATF6{\alpha}$(333) represents an innovative tool to investigate regulated intramembrane proteolysis of $ATF6{\alpha}$. It can substitute active pATF6(N) binding motif-based reporter cell lines.