• 제목/요약/키워드: internal transcribed 2

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Phylogenetic and Morphological Identification of the Novel Pathogen of Rheum palmatum Leaf Spot in Gansu, China

  • Wang, Yan;Charkowski, Amy O.;Zeng, Cuiyun;Zhu, Tiantian;Wang, Huizhen;Chen, Honggang
    • Mycobiology
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    • 제44권2호
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    • pp.93-98
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    • 2016
  • A new leaf spot disease was observed on leaves of Rheum palmatum (Chinese rhubarb) in Northwest China (Gansu Province) starting in 2005. A Septoria-like fungus was isolated and completion of Koch's postulates confirmed that the fungus was the casual agent of the leaf spot disease. Morphology and molecular methods were combined to identify the pathogen. The fungus produced conidiomata pycnidia and the conidia were 2~5 septate, $61.2{\sim}134.1{\mu}m$ in length and $3.53{\sim}5.3{\mu}m$ in width, which is much larger than the known Spetoria species that infects Polygonaceae species. Phylogenic analysis of the internal transcribed spacer region confirmed that this Septoria-like fungus is within the Septoria genus but distinct from known Septoria species. Together, these morphological and phylogenetic data support that the R. palmatum infecting Septoria strain is a newly-described plant pathogenic species.

Blastobotrys illinoisensis, an Unrecorded Anamorphic Yeast Strain Isolated from the Gut of the Earthworm Eisenia fetida

  • Ji Yun Son;Myung Kyum Kim
    • 한국균학회지
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    • 제50권4호
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    • pp.373-381
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    • 2022
  • Strain E4, an unrecorded species of dimorphic fungi, was isolated from the gut of earthworms collected in Gyeonggi Province, South Korea. Nucleotide sequence analysis of the D1/D2 region of the large subunit (LSU) rRNA gene and the internal transcribed spacer (ITS) region revealed that this species is a member of the genus Blastobotrys, Blastobotrys illinoisensis. Strain E4 differed from its closest known species, B. mokoenaii and B. malaysiensis, by harboring 3-5 and 12-14 nucleotide substitutions in the D1/D2 and ITS regions, respectively. Phylogenetic analysis based on concatenated sequences of the D1/D2 region of the LSU rRNA gene and the ITS region also indicated that strain E4 belongs to the Blastobotrys clade and is distinct from other related species in the clade. The previously unreported isolate could be distinguished from closely related species by its inability to ferment carbon sources. To our knowledge, this is the first report on the isolation of Blastobotrys species from the gut of earthworms in Korea. The strain used was E4 (=KCTC 27831=JCM 33428).

Ribosomal DNA의 ITS부위에 대한 RFLP 분석에 의한 Phellinus baumii PMO-P4의 유전학적 특성 (Genetic characterization of Phellinus baumii PMO-P4 by analyzing restriction fragment length polymorphisms of nuclear ribosomal DNA internal transcribed spacers (ITS))

  • 장윤희;김태락;김현수;여익현;이상윤;하효철
    • 한국버섯학회지
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    • 제4권2호
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    • pp.43-47
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    • 2006
  • 국내에서 재배하여 생산되고 있는 상황버섯의 일종인 PMO-P4균주에 대한 ITS 영역의 염기서열 분석을 실시하였으며 목질 진흙버섯으로 잘 알려져 있는 P. linteus와 함께 RFLP분석을 통하여 상호 비교한 결과 PMO-P4균주는 P. baumii로 판명되었다. 이 결과를 토대로 이미 보고되어 있는 Phellinus속 균주들과의 종간 ITS 영역의 상동성을 비교한 결과 48.6%-72.2%였으며 본 연구에서 비교한 종들 가운데서는 P. linteus와 상동성이 가장 높았으며 P. gilvus와 상동성이 가장 낮았다.

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Prevalence and Phylogenetic Analyses of Trichuris suis in Pigs in Hunan Province, Subtropical China

  • Tan, Lei;Wang, Aibing;Yi, Jing;Liu, Yisong;Li, Jiayu;Liu, Wei
    • Parasites, Hosts and Diseases
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    • 제56권5호
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    • pp.495-500
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    • 2018
  • Trichuris suis infection in pigs is ubiquitous in intensive and extensive farms, which causes potential threat to human health. The objective of this research was to investigate the prevalence of T. suis in pigs in Hunan province. Total 2,267 fresh fecal samples distributed in 28 pig farms from 7 different administrative regions (Hunan province) were evaluated for the existence of T. suis eggs using saturated NaCl floating method. The average infection rate of T. suis in pigs was 8.91% in Hunan province. To determine genetic variation of the gained T. suis isolates in the present study, the internal transcribed spacer (ITS) regions from nuclear ribosomal DNA (rDNA) of 7 T. suis isolates were cloned and analyzed. Nucleotide diversities were 1.0-3.5% and 0-3.8% for ITS-1 and ITS-2, respectively. Phylogenetic analyses indicated that all isolates collected in the present study and T. suis available in Genbank generated a monophyletic clade. The present investigation revealed high infection rates of T. suis in pigs in Hunan province, which shed light on making effective measures to prevent and control T. suis infection in pigs in Hunan province.

토천궁의 뿌리에서 분리된 2종의 국내 미기록 내생균: Pithomyces chartarum and Plectosphaerella niemeijerarum (Two Unrecorded Enophytic Fungi Isolated from Root of Ligusticum chuanxiong in Korea: Pithomyces chartarum and Plectosphaerella niemeijerarum)

  • 박혁;정충렬;엄안흠
    • 한국균학회지
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    • 제47권4호
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    • pp.329-335
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    • 2019
  • 경북 영주의 산림약용자원연구소에서 재배된 토천궁의 뿌리에서 내생균을 분리하였다. 분리된 균주는 형태적 특성의 분석과 internal transcribed spacer, large subunit rDNA, beta-tubulin 영역의 분자 생물학적 계통분석을 이용해 동정하였다. 연구 과정에서 2종의 국내 미기록종 내생균 균주를 확인하였고, 확인된 종은Pithomyces chartarum 과 Plectosphaerella niemeijerarum이다. 미기록종 내생균 균주의 형태적 특성 확인 및 분자계통 분석의 결과에 대해 기술하였다.

표주박이끼(Funaria hygrometrica)에서 분리된 2종의 국내 미기록 내생균 (Two Unrecorded Endophytic Fungi Isolated from Funaria hygrometrica in Korea)

  • 최현숙;박혁;엄안흠
    • 한국균학회지
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    • 제47권4호
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    • pp.313-318
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    • 2019
  • 표주박이끼의 헛뿌리(rhizoid)에서 내생균을 분리하였다. 분리된 균주는 형태적 특성 및 internal transcribed spacer, large subunit rDNA 영역의 분자적 분석을 토대로 동정하였다. 연구 과정에서 2종의 국내 미기록종 내생균 균주를 확인하였고, 확인된 종은 Curvularia protuberata, Didymella anserina이다. 미기록종 내생균 균주의 형태적 특성 및 계통 분석 결과에 대해 기술하였다.