• 제목/요약/키워드: hydrogen bonds

검색결과 375건 처리시간 0.026초

Sulfamethoxypyridazine의 결정 및 분자구조 (The Crystal and Molecular Structures of Sulfamethoxypyridazine)

  • 이영자;박영자
    • 대한화학회지
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    • 제25권4호
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    • pp.219-227
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    • 1981
  • Sulfamethoxypyridazine, $C_{11}H_{12}N_4O_3S$의 결정 및 분자구조를 X-선 사진 회절법으로 구성하였다. 결정구조는 직접법으로 밝혀 최소자승법으로 정밀화 하였으며 2615개의 회절 반점에 대한 최종 R값은 0.085이었다. 비대칭단위내의 분자 두개 A와 B는 S-N(2) 결합에 대한 형태가 서로 다른 형태 이성질체를 이루며, N(2A)H${\ldots}$N(3B)와 N(2B)H${\ldotst}$O(1A) 수소 결합으로 연결되어 있다. 벤젠과 피리다진 고리의 면들이 이루는 각은 분자 A에서는 $89^{\circ}$, 분자 B에서는 $77^{\circ}$이다.

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Synthesis of Poly(methacrylic acid)-functionalized SBA-15 and its Adsorption of Phenol in Aqueous Media

  • Vo, Vien;Kim, Hee-Jin;Kim, Ha-Yeong;Kim, Youngmee;Kim, Sung Jin
    • Bulletin of the Korean Chemical Society
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    • 제34권12호
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    • pp.3570-3576
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    • 2013
  • Poly(methacrylic acid)-functionalized SBA-15 silicas (denoted as P-x-PMA/SBA-15 where x is molar ratio of TSPM/(TEOS+TSPM) in percentage in the initial mixture) were synthesized by co-condensation of tetraethoxysilane and varying contents of 3-(trimethoxysilyl)propyl methacrylate in acidic medium with the block copolymer Pluronic 123 as a structure directing agent and then polymerization by methacrylic acid in the presence of ammonium persulfate as an initiator. The functionalized materials were characterized by PXRD, TEM, SEM, IR, and $N_2$ adsorption-desorption at 77 K. The investigation of phenol adsorption in aqueous solution on the materials showed that the poly(methacrylic acid)-functionalized mesoporous silicas possess strong adsorption ability for phenol with interaction of various kinds of hydrogen bonds. The adsorption data were fitted to Langmuir isotherms and the maximum adsorption capacity of the three functionalized materials P-5-PMA/SBA-15, P-10-PMA/SBA-15, and P-15-PMA/SBA-15 to be 129.37 mg/g, 187.97 mg/g, and 78.43 mg/g, respectively, were obtained. The effect of the pH on phenol adsorption was studied.

보론 도우핑된 비정질 실리콘을 이용한 쌍극 박막 트랜지스터의 전기적 특성 (Electrical Properties of Boron-Doped Amorphous Silicon Ambipolar Thin Film Transistor)

  • 추혜용;장진
    • 대한전자공학회논문지
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    • 제26권5호
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    • pp.38-45
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    • 1989
  • 보론이 100ppm으로 도우핑된 비정질 실리콘을 이용한 쌍극 박막 트랜지스터를 CVD 방법으로 제작하여 전기적 특성을 조사하였다. 쌍극 박막 트랜지스터에 인가한 트레인 전압이 증가하면 정공채널의 드레인 전류는 전자와 정공의 주입에 의해 크게 증가한다. 또한 게이트 전압의 인가 시간에 따른 드레인 전류는 streched exponential로 감소하는데, 이는 전자축적층에 의해 생기는 댕글린 본드 밀도의 변화가 수소의 확산과 동일한 시간 의존성을 갖는 것을 의미한다. 이러한 실험 결과로 부터 보론이 도우핑된 수소화된 비정질 실리콘에 게이트 전압을 인가하거나, 빛 조사시 도우핑 효율이 변화함을 알 수 있다.

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Ethylenediamine 鹽酸鹽의 結晶構造 (The Crystal Structure of Ethylenediamine Dihydrochloride $ClH{\cdot}H_2N{\cdot}CH_2{\cdot}CH_2{\cdot}NH_2{\cdot}HCl$)

  • 구정회;김문일;유정수
    • 대한화학회지
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    • 제7권4호
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    • pp.293-298
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    • 1963
  • The crystal structure of ethylenediamine dihydrochloride has been determined by the two-dimensional Patterson methods and refined by two-dimensional Fourier syntheses. The unit cell dimensions are a = 4.44${\pm}$0.02, b = 6.88${\pm}$0.02, c = 9.97${\pm}$0.02 ${\AA}$, ${\beta}$ = 92${\pm}$$1^{\circ}$. The space group is $P2_1_{/c}$. The carbon and nitrogen atoms in the ethylenediamine itself lie on one plane and its structure has a trans-form with a centre of symmetry in it, and C-C distance of 1.54 ${\AA}$, C-N distance of 1.48${\AA}$ and C-C-N bond angle of $109.07^{\circ}$. The molecules are linked by N-H${\cdots}$Cl hydrogen bonds with distance of 3.14, 3.16 and 3.22 ${\AA}$ forming three dimensional network. The values of reliability factor for F(okl), F(hol) and F(hko) are 0.11, 0.10 and 0.09 respectively.

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Biochemical and Structural Analysis of Hormone-sensitive Lipase Homolog EstE7: Insight into the Stabilized Dimerization of HSL-Homolog Proteins

  • Nam, Ki-Hyun;Park, Sung-Ha;Lee, Won-Ho;Hwang, Kwang-Yeon
    • Bulletin of the Korean Chemical Society
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    • 제31권9호
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    • pp.2627-2632
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    • 2010
  • Hormone sensitive lipase (HSL) plays a major role in energy homeostasis and lipid metabolism. Several crystal structures of HSL-homolog proteins have been identified, which has led to a better understanding of its molecular function. HSL-homolog proteins exit as both monomer and dimer, but the biochemical and structural basis for such oligomeric states has not been successfully elucidated. Therefore, we determined the crystal structure of HSL-homolog protein EstE7 from a metagenome library at $2.2\;{\AA}$ resolution and characterized the oligomeric states of EstE7 both structurally and biochemically. EstE7 protein prefers the dimeric state in solution, which is supported by its higher enzymatic activity in the dimeric state. In the crystal form, EstE7 protein shows two-types of dimeric interface. Specifically, dimerization via the external ${beta}8$-strand occurred through tight association between two pseudosymmetric folds via salt bridges, hydrogen bonds and van der Waals interactions. This dimer formation was similar to that of other HSL-homolog protein structures such as AFEST, BEFA, and EstE1. We anticipate that our results will provide insight into the oligomeric state of HSL-homolog proteins.

Neo-inositol 및 Scyllo-inositol의 結晶 및 分子 構造 (The Crystal and Molecular Structures of Neo-inositol and Two Forms of Scyllo-inositol)

  • Yeon, Younghee
    • 한국결정학회지
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    • 제12권3호
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    • pp.150-156
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    • 2001
  • Nea-inositol is triclinic P???, with a =4.799(1), b=6.520(1), c=6.505(1) Å, α=70.61(1), β=69.41(1), γ=73.66(1)°, Z=1, molecular symmetry ???. Scyllo-inositol, from A, is monoclinic, P2₂/c, with a=5.089(1), c=11.948(2)Å, β=116.98(2)°, Z=2, molecular symmetry ???. Form B is triclinic, P???, with a=6.725(1), b=6.797(1), c=8.635(2)° Å, α=95.45(2), β=99.49(2), γ=99.19(2)°, Z=2, molecular symmetry ???. This crystal structure is pseudo-monoclinic, having two centrosymmetrical molecules with the almost identical conformation and orientation in the crystal lattice. The molecules have the expected chair conformations with puckering parameters of Q=0.609(2)Å for n대, 0.581(2)Å for Scyllo-A, and 0.566(2) Å for Scyllo-B. The bond lengths and angles are normal, C-C, 1.505 to 1.531 8A, C-O, 1.415 to 1.440 Å, C-C-C, 108.2 to 112.9°. The molecules are linked by systems of finite and infinite chains of hydrogen bonds.

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Poria cocos 균핵에서 분리한 성분들과 DNA Topoisomerase I의 반응양상 및 효소저해 활성 (Binding Mode and Inhibitory Activity of Constituents Isolated from Sclerotium of Poria cocos with DNA Topoisomerase I)

  • 최인희;김지현;김춘미
    • 약학회지
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    • 제49권5호
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    • pp.428-436
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    • 2005
  • DNA topoisomerase I(TOP1) helps the control of DNA replication, transcription and recombination by assist­ing breaking and rejoining of DNA double strand. Camptothecin (CPT) and its derivative, topotecan, are known to inhibit TOP1 by intercalating into TOP1-DNA complex. Recently various non-CPT intercalators are synthesized for a new class of TOP1 inhibitors. In this study, six compounds isolated from Poria cocos were investigated for their interaction with TOP1­DNA complex using the flexible docking program, FlexiDock. The binding modes were analyzed and compared with the TOP1 inhibition activities. The compounds that showed potent activity were intercalated between the + 1/-1 base pairs of DNA, located near the active site phosphotyrosine723 and formed hydrogen bonds with active site residues. On the other hand, compounds with no activity were not docked at all. The binding modes were well correlated with the inhibition activity, suggesting the possibility that potent inhibitors can be designed from the information presented by the docking study.

Crystal Structure of Byakangelicin ($C_{17}H_{18}O_{7}$)

  • Kim, Yang-Bae;Oh, Yong-Ho;Park, Il-Yeung;Shin, Kuk-Hyun
    • Archives of Pharmacal Research
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    • 제25권3호
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    • pp.275-279
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    • 2002
  • The crystal structure of byakangelicin, one of furanocoumarin aldose reductase inhibitors, was determined by X-ray diffraction method. The crystal is triclinic, with a=8.114(1), b=10.194(1), $c=11.428(1)\AA,{\;}{\alpha}=111.50(1),{\}{\beta}=95.57(1),{\}{\gamma}=112.52(1)^{circ},{\;}D_x=1.41,{\;}D_m=1.39{\;}g/cm^3$, space group P1 and Z=2. The intensity data were collected by ${\omega}-2{\theta}$ scan method with $CuK_{a}$ radiations. The structure was solved by direct method and refined by full matrix least-squares procedure to the final R-value of 0.056. There are two molecules with different conformations in an asymmetric unit. The molecules are kept by two intermolecular O-HO type hydrogen bonds and van der Waal's forces in the crystal. The absolute configuration of the molecules was estimated to S-form by the 'Eta refinement' procedure.

Hologram Based QSAR Analysis of Caspase-3 Inhibitors

  • Sathya., B
    • 통합자연과학논문집
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    • 제11권2호
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    • pp.93-100
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    • 2018
  • Caspases, a family of cysteinyl aspartate-specific proteases plays a central role in the regulation and the execution of apoptotic cell death. Caspase-3 has been proven to be an effective target for reducing the amount of cellular and tissue damage because the activation of caspases-3 stimulates a signalling pathway that ultimately leads to the death of the cell. In this study, Hologram based Quantitative Structure Activity Relationship (HQSAR) models was generated on a series of Caspase-3 inhibitors named 3, 4-dihydropyrimidoindolones derivatives. The best HQSAR model was obtained using atoms, bonds, and hydrogen atoms (A/B/H) as fragment distinction parameter using hologram length 61 and 3 components with fragment size of minimum 5 and maximum 8. Significant cross-validated correlation coefficient ($q^2=0.684$) and non cross-validated correlation coefficients ($r^2=0.754$) were obtained. The model was then used to evaluate the eight external test compounds and its $r^2_{pred}$ was found to be 0.559. Contribution map show that presence of pyrrolidine sulfonamide ring and its bulkier substituent's makes big contributions for improving the biological activities of the compounds.

$NH_3$$N_2$ 활성기 처리를 통한 Poly-SiliconTFT의 전기적 안정도에 관한 연구 (Study on the Electrical Stability of poly-Si TFT through the Passivation Treatment with $NH_3$ or $N_2$ Precursors)

  • 전재홍;최홍석;박철민;최권영;한민구
    • 대한전기학회:학술대회논문집
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    • 대한전기학회 1996년도 하계학술대회 논문집 C
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    • pp.1443-1445
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    • 1996
  • Hydrogen passivation enhances the electrical characteristics of poly-Si TFT(Thin Film Transistor). However, the weak Si-H bonds, generated during hydrogenation, degrade the stability of the device. So, we carried out the passivation treatment with $NH_3$ or $N_2$. We compared the effect of $NH_3$ or $N_2$ passivation treatments with that of hydrogenation in terms of stability. Through the $NH_3$ passivation treatment, we obtained the most improved subthreshold swing of 1.2V/decade from the initial subthreshold swing of 1.56V/decade. When electrical stress was given, the $NH_3$ passivated devices showed best electrical stability.

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