• 제목/요약/키워드: genetic test

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Genetic Parameters for Traits in Performance and Progeny Tests and Their Genetic Relationships in Japanese Black Cattle

  • Oikawa, T.;Hoque, M.A.;Hitomi, T.;Suzuki, K.;Uchida, H.
    • Asian-Australasian Journal of Animal Sciences
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    • 제19권5호
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    • pp.611-616
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    • 2006
  • Genetic parameters for performance traits on 409 bulls and growth and carcass traits on 591 of their steer progeny were estimated in Japanese Black cattle with Gibbs sampling. Traits of bulls included body weight at the start (BWS) and finish (BWF) of test, daily gain (DG), concentrate, roughage and TDN intake, and TDN conversion ratio. Progeny traits were BWS, BWF, DG, rib eye area, marbling score (MSR), dressing percentage and subcutaneous fat thickness (SFT). In bulls, heritabilities were high for BWS (0.50) and BWF (0.63) and moderate for concentrate (0.48) and TDN intake (0.45), while in progeny, the heritability for all the studied traits was moderate to high (ranging from 0.30 to 0.73), highlighting the potential for genetic improvement of these traits. Genetic correlations between TDN intake and growth traits (BWS, BWF and DG) in bulls were highly positive (ranging from 0.77 to 0.94). The weak but negative genetic correlation (-0.20) between MSR and SFT in progeny indicated that improvement of beef marbling without increasing subcutaneous fat deposition could be possible. The estimated genetic correlations of roughage intake of bulls with body weights (BWS and BWF) and MSR of their progeny were moderate (ranging from 0.35 to 0.52). On the basis of the selection for bulls, growth traits and TDN intake correlated positively with SFT (ranging from 0.43 to 0.53) of their progeny, suggesting the necessity of controlling the increase of SFT in selection programs.

한국 재래흑염소의 계통별 인공수정과 임신진단 키트의 활용 (Application of artificial insemination and pregnancy diagnosis kit for Korea native black goats)

  • 김관우;이진욱;전다연;이성수;김승창;이상훈
    • 한국산학기술학회논문지
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    • 제20권10호
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    • pp.446-451
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    • 2019
  • 본 연구의 목적은 인공수정 기법을 이용한 한국 재래흑염소 계통별 인공수정 수태율을 알아보고자 정액의 성상, 수태율 및 분만율을 조사하고, 임신진단을 위한 소의 임신진단 키트의 활용 가능성을 알아보는 것이다. 재래흑염소에서 전기자극을 통해 정액을 채취하여 3계통(당진, 장수, 통영)별 정액분석과 발정동기화 된 암컷에 인공수정을 실시하여 계통별 번식능력을 조사하였다. 인공수정된 암컷에서는 소의 임신진단 키트(IDEXX Rapid Visual Pregnancy Test kit)와 초음파진단으로 임신을 확인하였다. 그 결과 개통별 정액채취량은 1~1.5 ml 내외였으며, 정액농도는 $18{\sim}25{\times}10^8/ml$, 정액 채취 직후 정자활력은 97% 이상 높게 나타났다. 그리고 임신진단의 결과에서 소의 임신진단 키트와 초음파진단 모두 동일한 결과를 보였으며, 계통별 인공수정 수태율의 효율은 20~44%로, 통영계통이 44%로 가장 높게 나타났고 장수계통이 20%로 인공수정 수태율이 낮게 나타났다. 본 연구 결과를 통해 한국 재래흑염소의 계통별 인공수정 효율을 알 수 있었고, 조기 임신진단을 위한 소 임신진단 키트의 활용가능성을 확인할 수 있었다. 본 연구 결과는 재래흑염소 증식과 개량에 기여할 수 있을 것으로 사료된다.

유전자알고리즘을 이용한 궤도차량 동력장치의 주행부하주기 도출 (Determination of a Duty Cycle for Tracked Vehicle Using Genetic algorithm)

  • 오철성;임형은;황원걸
    • 한국자동차공학회논문집
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    • 제13권3호
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    • pp.154-161
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    • 2005
  • The durability of a vehicle is a very important performance which can be evaluated from endurance test. This study developed a procedure for determination of a duty cycle theoretically. Vehicle load data is classified and rearranged using standard test road profile. A load pattern and a duty cycles are extracted from classified vehicle data using genetic algorithm. A duty cycle could be utilized in dynamo test to meet required test mileage. The derived duty cycles have been verified by fatigue test through the dynamometer test.

Random Regression Models Are Suitable to Substitute the Traditional 305-Day Lactation Model in Genetic Evaluations of Holstein Cattle in Brazil

  • Padilha, Alessandro Haiduck;Cobuci, Jaime Araujo;Costa, Claudio Napolis;Neto, Jose Braccini
    • Asian-Australasian Journal of Animal Sciences
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    • 제29권6호
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    • pp.759-767
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    • 2016
  • The aim of this study was to compare two random regression models (RRM) fitted by fourth ($RRM_4$) and fifth-order Legendre polynomials ($RRM_5$) with a lactation model (LM) for evaluating Holstein cattle in Brazil. Two datasets with the same animals were prepared for this study. To apply test-day RRM and LMs, 262,426 test day records and 30,228 lactation records covering 305 days were prepared, respectively. The lowest values of Akaike's information criterion, Bayesian information criterion, and estimates of the maximum of the likelihood function (-2LogL) were for $RRM_4$. Heritability for 305-day milk yield (305MY) was 0.23 ($RRM_4$), 0.24 ($RRM_5$), and 0.21 (LM). Heritability, additive genetic and permanent environmental variances of test days on days in milk was from 0.16 to 0.27, from 3.76 to 6.88 and from 11.12 to 20.21, respectively. Additive genetic correlations between test days ranged from 0.20 to 0.99. Permanent environmental correlations between test days were between 0.07 and 0.99. Standard deviations of average estimated breeding values (EBVs) for 305MY from $RRM_4$ and $RRM_5$ were from 11% to 30% higher for bulls and around 28% higher for cows than that in LM. Rank correlations between RRM EBVs and LM EBVs were between 0.86 to 0.96 for bulls and 0.80 to 0.87 for cows. Average percentage of gain in reliability of EBVs for 305-day yield increased from 4% to 17% for bulls and from 23% to 24% for cows when reliability of EBVs from RRM models was compared to those from LM model. Random regression model fitted by fourth order Legendre polynomials is recommended for genetic evaluations of Brazilian Holstein cattle because of the higher reliability in the estimation of breeding values.

황벽나무 자연집단의 유전다양성 및 유전구조 분석 (Genetic Diversity and Genetic Structure of Phellodendron amurense Populations in South Korea)

  • 이제완;홍경낙;강진택
    • 한국산림과학회지
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    • 제103권1호
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    • pp.51-58
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    • 2014
  • 본 연구는 ISSR 표지자를 이용하여 국내 분포하는 황벽나무 7개 집단의 유전다양성과 유전구조를 분석하였다. 6개의 ISSR primer를 이용하여 분석한 결과 primer 당 평균 4.5개의 다형성 band를 확인하였고, 각 집단의 다형성 유전자좌의 비율은 평균 78.8%로 나타났다. Shannon의 유전다양성 지수(I)는 0.421로 나타났고, 이형접합체 기대치($H_e$)는 평균 0.285로 베이즈 방법을 이용한 평균 이형접합체 기대치(hs=0.287)와 유사하였다. AMOVA에서 전체 유전변이의 92.4%가 집단내 개체간 차이에 기인하며, 7.6%는 집단간 차이에 기인하였다. 베이즈 방법을 이용한 유전분화(${\theta}^{II}$)는 0.066으로 추정되었으며, 전체 집단의 근친교배율(f)은 0.479로 계산되었다. 유연관계 분석과 베이즈 군집분석결과 우리나라 황벽나무 집단은 가평, 화천, 봉평, 용평이 하나의 군집을 형성하였고, 산청 지역의 2개 집단(삼장 및 시천)이 다른 하나의 군집을 형성하였으며, 무주 집단이 산청지역의 집단과 지리적으로 근접함에도 불구하고 독립적인 군집을 나타내었다. Mantel's test 결과 집단간 유전적 유연관계와 지리적 분포의 상관성은 나타나지 않았다. 황벽나무의 유전자원보존을 위한 대상 집단 선정 시 생태적 및 생활사적 특징과 함께 본 연구결과에서 나타난 유전다양성과 군집구조 분석결과를 고려하는 것이 효과적일 것으로 사료된다.

Genotoxicity Study of Glycopeptide (G-7%NANA)

  • Kim, Ha-Young;Kim, Min-Hee;Kim, Hee-Kyong;Park, Yeong-Chul
    • Toxicological Research
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    • 제34권3호
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    • pp.259-266
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    • 2018
  • Glycomacropeptide (GMP), a whey protein of milk, has functions including differentiation and development of nervous system, and anticancer and antiviral effects. To develop new functions, N-acetylneuraminic acid (NANA) containing 7% sialic acid was separated from GMP to produce G-7%NANA. N-glycolylneuraminic acid (Neu5Gc) is another type of sialic acid separated from GMP, which has been linked to immune disorders and chronic inflammation-mediated diseases. Therefore, safety was a concern in the use of G-7%NANA in functional foods. To ensure safety, in this study, three genetic toxicity tests on G-7%NANA were conducted. In the reverse mutation test using Salmonella typhimurium TA98, TA100, TA1535, TA1537, and Escherichia coli WP2uvrA, and in the chromosome aberration test using CHO-K1 cells, no significant differences from negative control were found at all dose levels. Similarly, no dose-related differences were evident compared to negative control in the micronucleus test using ICR mice. There was no evidence of G-7%NANA-related genetic toxicity.

Genetic Toxicity Test of Emodin by Ames, Micronucleus, Comet Assays and Microarray Analysis Showing Differential Result

  • Go, Seo-Y.;Kwon, Kyoung-J.;Park, Sue-N.;Sheen, Yhun-Y.
    • Biomolecules & Therapeutics
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    • 제15권3호
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    • pp.192-198
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    • 2007
  • Emodin (1,3,8-trihydroxy-6-methylanthraquinone) is a major constituent of rhubarb. Although it has been claimed to have a wild spectrum of therapeutic value, its side effects, especially in human kidney cells have not been well characterized. In this study, we have carried out in vitro genetic toxicity test of emodin and microarray analysis of differentially expressed genes in response to emodin. The result of Ames test showed mutations with emodin treatment in base substitution strain TA1535 both with and without exogenous metabolic activation. Likewise, emodin showed mutations in frame shift TA98 both with and without exogenous metabolic activation. The result of COMET assay in L5178Y cells with emodin treatment showed DNA damage both with and without exogenous metabolic activation. Emodin did not increase micronuclei in CHO cells both with and without exogenous metabolic activation. 150 Genes were selected as differentially expressed genes in response to emodin by microarray analysis and these genes would be candidate biomarkers of genetic toxic action of emodin.

변형된 돌연변이를 가진 대화형 유전자 알고리즘을 이용한 학습 콘텐츠의 설계 및 구현 (Design and Implementation of Learning Contents Using Interactive Genetic Algorithms with Modified Mutation)

  • 김정숙
    • 한국컴퓨터정보학회논문지
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    • 제10권6호
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    • pp.85-92
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    • 2005
  • 본 논문에서는 변형된 돌연변이 연산자를 적용한 대화형 유전자 알고리즘을 사용해서 웹-기반 학습 콘텐츠를 개발하였다. 대화형 유전자 알고리즘은 주로 상호 교환(reciprocal exchange) 돌연변이를 사용한다. 그러나 본 논문에서는 학습자의 학습 효과를 높이기 위해 돌연변이 연산자를 변형하였다. 그리고, 대화형 유전자 알고리즘을 이용한 웹 기반 학습 콘텐츠는 동적인 학습 내용과 실시간 테스트 시스템을 제공한다. 특히 학습자가 자신의 특성과 흥미에 따라 대화형 유전자 알고리즘을 수행하면서 효율적인 학습 환경과 콘텐츠 배열 순서를 선택할 수 있다.

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유전자 알고리즘을 이용한 로커암 축의 최적설계에 관한 연구 (A Study on Optimal Design of Rocker Arm Shaft using Genetic Algorithm)

  • 안용수;이수진;이동우;홍순혁;조석수;주원식
    • 한국정밀공학회:학술대회논문집
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    • 한국정밀공학회 2004년도 추계학술대회 논문집
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    • pp.198-202
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    • 2004
  • This study proposes a new optimization algorithm which is combined with genetic algorithm and ANOM. This improved genetic algorithm is not only faster than the simple genetic algorithm, but also gives a more accurate solution. The optimizing ability and convergence rate of a new optimization algorithm is identified by using a test function which have several local optimum and an optimum design of rocker arm shaft. The calculation results are compared with the simple genetic algorithm.

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RAPD 표지인자를 이용한 이탈리안 라이그라스 품종의 유전적 변이 및 유연관계 분석 (Genetic Polymorphisms and phylogenetic Relationships of Italian Ryegrass Cultivars Based on Random Amplified Polymorphic DNA ( RAPD ) Markers)

  • 임용우;이승재;신정섭;정영수;최기준;임영철;임근발;박병훈
    • 한국초지조사료학회지
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    • 제18권1호
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    • pp.35-42
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    • 1998
  • Eleven Italian ryegrass cultivars were examined for their genetic polymorphisms and phylogenetic relationships using randomly amplified polymorphic DNA (RAPD) markers. In RAPD analysis of 34 random primers, 96 of total 162 bands obtained from 16 primers were polymorphic and sizes of polymorphic band ranged between 0.5 and 1.5kb. Number of bands amplified per primer was varied from 3 to 16 and average number was 14.8. Phylogenetic relationship among cultivars based on the RAPD analysis was examined using UPGMA computer program. In pairwise genetic similarity test of 11 Italian ryegrass cultivars, Grazer and Orlando showed highest coefficient of genetic similarity as 0.740, whereas Marshall and Orlando was lowest as 0.438. Eleven Italian ryegrass cultivars were grouped into 3 major clusters and genetic distance of clusters ranged between 0.567 and 0.646, indicating low level of genetic variation.

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