• 제목/요약/키워드: genetic structure

검색결과 1,605건 처리시간 0.025초

조팝나무의 유전적 다양성과 집단구조 분석을 위한 ISSR 분석 (Genetic Diversity and Population Structure of Spiraea prunifolia for. simpliciflora by Inter-Simple Sequence Repeats)

  • 허만규
    • 생명과학회지
    • /
    • 제19권9호
    • /
    • pp.1183-1189
    • /
    • 2009
  • 조팝나무는 목본이며 약용으로 매우 중요하며 우리나라 산림청 지정 보호수종이다. 이 속내 7집단에서 85개체에 대해 ISSR (inter simple sequence repeats) 마커로 이들 집단에 대한 유전적 변이와 집단구조를 조사하였다. 65개의 다형성 좌위와 78개 ISSR 유전자형을 얻었다. 덕유산 집단과 능동산 집단에는 1개체 이상 공유하는 유전자형이 포함되어 있었다. 전체 유전적 다양도는 종수준과 집단수준에서 각각 0.293과 0.183이였다. 집단의 분화($G_{ST}$)는 0.373으로 나타났다. 따라서 전체 변이의 37.3%는 집단 간에 있었다. ISSR 마커로 한국 내 조팝나무 집단의 분화는 잘 분리되어 ISSR로 조팝나무 집단 연구에 유익하며 유전적 다양도와 집단구조의 통찰은 종보전에 대한 기초 정보로 활용할 수 있을 것으로 사료된다.

Assessment of genetic diversity and phylogenetic relationships of Korean native chicken breeds using microsatellite markers

  • Seo, Joo Hee;Lee, Jun Heon;Kong, Hong Sik
    • Asian-Australasian Journal of Animal Sciences
    • /
    • 제30권10호
    • /
    • pp.1365-1371
    • /
    • 2017
  • Objective: This study was conducted to investigate the basic information on genetic structure and characteristics of Korean Native chickens (NC) and foreign breeds through the analysis of the pure chicken populations and commercial chicken lines of the Hanhyup Company which are popular in the NC market, using the 20 microsatellite markers. Methods: In this study, the genetic diversity and phylogenetic relationships of 445 NC from five different breeds (NC, Leghorn [LH], Cornish [CS], Rhode Island Red [RIR], and Hanhyup [HH] commercial line) were investigated by performing genotyping using 20 microsatellite markers. Results: The highest genetic distance was observed between RIR and LH (18.9%), whereas the lowest genetic distance was observed between HH and NC (2.7%). In the principal coordinates analysis (PCoA) illustrated by the first component, LH was clearly separated from the other groups. The correspondence analysis showed close relationship among individuals belonging to the NC, CS, and HH lines. From the STRUCTURE program, the presence of 5 clusters was detected and it was found that the proportion of membership in the different clusters was almost comparable among the breeds with the exception of one breed (HH), although it was highest in LH (0.987) and lowest in CS (0.578). For the cluster 1 it was high in HH (0.582) and in CS (0.368), while for the cluster 4 it was relatively higher in HH (0.392) than other breeds. Conclusion: Our study showed useful genetic diversity and phylogenetic relationship data that can be utilized for NC breeding and development by the commercial chicken industry to meet consumer demands.

Development of Microsatellite Markers and their Use in Genetic Diversity and Population Analysis in Eleutherococcus senticosus

  • Lee, Kyung Jun;An, Yong-Jin;Ham, Jin-Kwan;Ma, Kyung-Ho;Lee, Jung-Ro;Cho, Yang-Hee;Lee, Gi-An
    • 한국자원식물학회지
    • /
    • 제30권3호
    • /
    • pp.323-330
    • /
    • 2017
  • Eleutherococcus senticosus (Siberian ginseng) is an important medicinal tree found in northeast Asia. In this study, we analyzed the genome-wide distribution of microsatellites in E. senticosus. By sequencing 711 clones from an SSR-enriched genomic DNA library, we obtained 12 polymorphic SSR markers, which also revealed successful amplicons in E. senticosus accessions. Using the developed SSR markers, we estimated genetic diversity and population structure among 131 E. senticosus accessions in Korea and China. The number of alleles ranged from 2 to 11, with an average of 7.4 alleles. The mean values of observed heterozygosity ($H_O$) and expected heterozygosity ($H_E$) were 0.59 and 0.56, respectively. The average polymorphism information content (PIC) was 0.51 in all 131 E. senticosus accessions. E. senticosus accessions in Korea and China showed a close genetic similarity. Significantly low pairwise genetic divergence was observed between the two regions, suggesting a relatively narrow level of genetic basis among E. senticosus accessions. Our results not only provide molecular tools for genetic studies in E. senticosus but are also helpful for conservation and E. senticosus breeding programs.

Morphometric variation, genetic diversity and allelic polymorphism of an underutilised species Thaumatococcus daniellii population in Southwestern Nigeria

  • Animasaun, David Adedayo;Afeez, Azeez;Adedibu, Peter Adeolu;Akande, Feyisayo Priscilla;Oyedeji, Stephen;Olorunmaiye, Kehinde Stephen
    • Journal of Plant Biotechnology
    • /
    • 제47권4호
    • /
    • pp.298-308
    • /
    • 2020
  • Genetic diversity among Thaumatococcus daniellii populations in the southwestern region of Nigeria were assessed using morphometric and molecular markers to determine the population structure and existing genetic relationship for its improvement, conservation and sustainable utilisation. Populations from five locations in each of the six states were used for the study. Morphometric data were collected on folia characters and analysed for variability. Genome DNA was isolated from the plant leaf and amplified by polymerase chain reaction with inter-simple sequence repeat markers (ISSR) to determine the allelic polymorphism, marker effectiveness and genetic relationship of the population. The results showed significant variations in petiole length and leaf dimensions of the populations within and across the states. These morphometric traits are the major parameters that delimit the populations and they correlated significantly at P≤0.05. Analysis of the electrophoregram showed that the ISSR markers are effective for the diversity study. A total of 136 loci were amplified with an average of 7.16 loci per marker, 63.2% of the loci were polymorphic. The Principal Coordinate Analysis revealed that seven factors accounted for 81.6% of the variation and the dendrogram separated the populations into two major groups at a genetic distance of 10 (about 90% similarity) with sub-groups and clusters. Most populations within the state had a high degree of similarity, nonetheless, strong genetic relationship exists among populations from different states. The close relationship between populations across the states suggests a common progenitor, which are likely separated by ecological or geographical isolation mechanisms.

유전 알고리즘을 이용한 다중모드 감지기를 위한 전극의 형상 설계 (Electrode Shape Design for Multi-Mode Sensors Using Genetic Algorithm)

  • 박철휴;이기문;박현철
    • 대한기계학회:학술대회논문집
    • /
    • 대한기계학회 2004년도 추계학술대회
    • /
    • pp.637-642
    • /
    • 2004
  • This paper presents a new shape design method for the multi-mode sensor that can detect selected multiple modes for the active vibration control of mechanical structures. The structure used for this study is an isotropic cantilever beam type with a PVDF(polyvinylidene fluoride) which is bonded onto the structure as a sensor. Characteristic behaviors of the sensor are related with the electrode shapes of PVDF. The shape optimization problem is solved by defining a new multi-objective function and using the genetic algorithm. Resulting electrode shape functions have good performances to detect the multiple vibration modes. The results of analytical simulations are compared with those of experiment works. The results agree well each other. Hence, the obtained experimental results give evidence for the validity of the presented theoretical analysis of the electrode shape design problem.

  • PDF

Optimal Design of a Smart Actuator by using of GA for the Control of a Flexible Structure Experiencing White Noise Disturbance

  • Han, Jungyoup;Heo, Hoon
    • 한국소음진동공학회:학술대회논문집
    • /
    • 한국소음진동공학회 1996년도 춘계학술대회논문집; 부산수산대학교, 10 May 1996
    • /
    • pp.125-129
    • /
    • 1996
  • This paper deals with the problem of placement/sizing of distributed piezo actuators to achieve the control objective of vibration suppression. Using the mean square response as a performance index in optimization, we obtain optimal placement and sizing of the actuator. The use of genetic algorithms as a technique for solving optimization problems of placement and sizing is explored. Genetic algorithms are also used for the control strategy. The analysis of the system and response moment equations are carried out by using the Fokker-Planck equation. This paper presents the design and analysis of an active controller and optimal placement/sizing of distributed piezo actuators based on genetic algorithms for a flexible structure under random disturbance, shows numerical example and the result.

  • PDF

신경회로망과 유전자 알고리즘을 이용한 열연두께 정도 향상 (Improvement of Thickness Accuracy in Hot-rolling Mill Using Neural Network and Genetic Algorithm)

  • 손준식;김일수;이덕만;권영섭
    • 한국공작기계학회논문집
    • /
    • 제15권5호
    • /
    • pp.59-64
    • /
    • 2006
  • The automation of hot rolling process requires the developments of several mathematical models for simulation and quantitative description of the industrial operations involved in order to achieve the continuously increasing productivity, flexibility and quality(dimensional accuracy, mechanical properties and surface properties). The mathematical modeling of hot rolling process has long been recognized to be a desirable approach to investigate rolling operating practice and design of mill requirement. To achieve this objectives, a new teaming method with neural network to improve the accuracy of rolling force prediction in hot rolling mill is developed. Also, Genetic Algorithm(GA) is applied to select the optimal structure of the neural network and compared with that of engineers experience. It is shown from this research that both structure selection methods can lead to similar results.

Experimental studies on impact damage location in composite aerospace structures using genetic algorithms and neural networks

  • Mahzan, Shahruddin;Staszewski, Wieslaw J.;Worden, Keith
    • Smart Structures and Systems
    • /
    • 제6권2호
    • /
    • pp.147-165
    • /
    • 2010
  • Impact damage detection in composite structures has gained a considerable interest in many engineering areas. The capability to detect damage at the early stages reduces any risk of catastrophic failure. This paper compares two advanced signal processing methods for impact location in composite aircraft structures. The first method is based on a modified triangulation procedure and Genetic Algorithms whereas the second technique applies Artificial Neural Networks. A series of impacts is performed experimentally on a composite aircraft wing-box structure instrumented with low-profile, bonded piezoceramic sensors. The strain data are used for learning in the Neural Network approach. The triangulation procedure utilises the same data to establish impact velocities for various angles of strain wave propagation. The study demonstrates that both approaches are capable of good impact location estimates in this complex structure.

유전 알고리듬을 이용한 지능형 퍼지 제어기에 관한 연구 (Optimization of fuzzy logic controller using genetic algorithm)

  • 장욱;손유석;박진배;주영훈
    • 제어로봇시스템학회:학술대회논문집
    • /
    • 제어로봇시스템학회 1996년도 한국자동제어학술회의논문집(국내학술편); 포항공과대학교, 포항; 24-26 Oct. 1996
    • /
    • pp.960-963
    • /
    • 1996
  • In this paper, the optimization of a fuzzy controller using genetic algorithm is studied. The fuzzy controller has been widely applied to industries because it is highly flexible, robust easy to implement and suitable for complex systems. Generally, the design of fuzzy controller has difficulties in determining the structure of the rules and the membership functions. To solve these problems, the proposed method optimizes the structure of fuzzy rules and the parameters of membership functions simultaneously in an off-line method. The proposed method is evaluated through computer simulations.

  • PDF

유전자적 최적 정보 입자 기반 퍼지 추론 시스템 (Genetically Optimized Information Granules-based FIS)

  • 박건준;오성권;이영일
    • 대한전기학회:학술대회논문집
    • /
    • 대한전기학회 2005년도 학술대회 논문집 정보 및 제어부문
    • /
    • pp.146-148
    • /
    • 2005
  • In this paper, we propose a genetically optimized identification of information granulation(IG)-based fuzzy model. To optimally design the IG-based fuzzy model we exploit a hybrid identification through genetic alrogithms(GAs) and Hard C-Means (HCM) clustering. An initial structure of fuzzy model is identified by determining the number of input, the seleced input variables, the number of membership function, and the conclusion inference type by means of GAs. Granulation of information data with the aid of Hard C-Means(HCM) clustering algorithm help determine the initial paramters of fuzzy model such as the initial apexes of the membership functions and the initial values of polyminial functions being used in the premise and consequence part of the fuzzy rules. And the inital parameters are tuned effectively with the aid of the genetic algorithms and the least square method. And also, we exploite consecutive identification of fuzzy model in case of identification of structure and parameters. Numerical example is included to evaluate the performance of the proposed model.

  • PDF