Development of Microsatellite Markers and their Use in Genetic Diversity and Population Analysis in Eleutherococcus senticosus |
Lee, Kyung Jun
(National Agrobiodiversity Center, National Institute of Agricultural Sciences, RDA)
An, Yong-Jin (Ginseng & Medicinal Herb Experiment Station) Ham, Jin-Kwan (Ginseng & Medicinal Herb Experiment Station) Ma, Kyung-Ho (National Agrobiodiversity Center, National Institute of Agricultural Sciences, RDA) Lee, Jung-Ro (National Agrobiodiversity Center, National Institute of Agricultural Sciences, RDA) Cho, Yang-Hee (National Agrobiodiversity Center, National Institute of Agricultural Sciences, RDA) Lee, Gi-An (National Agrobiodiversity Center, National Institute of Agricultural Sciences, RDA) |
1 | Ali, A., Y.-M. Choi, D.Y. Hyun, S. Lee, S. Oh, H.-J. Park, Y.-H. Cho and M.C. Lee. 2016. EST-SSR based genetic diversity and population structure among Korean landraces of foxtail millet (Setaria italica L.). Korean J. Plant Res. 29:322-330. DOI |
2 | Butcher, P.A., S. Decroocq, Y. Gray and G.F. Moran. 2000. Development, inheritance and cross-species amplification of microsatellite markers from Acacia mangium. Theor. Appl. Genet. 101:1282-1290. DOI |
3 | Cavagnaro, P.F., D.A. Senalik, L.M. Yang, P.W. Simon, T.T. Harkins, C.D. Kodira, S.W. Huang and Y.Q. Weng. 2010. Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.). BMC Genomics 11:569. DOI |
4 | Cui H., K.T. Moe, J.W. Chung, Y.I. Cho, G.A. Lee and Y..J. Park. 2010. Genetic diversity and population structure of rice accessions from South Asia using SSR markers. Korean J. Breed. Sci. 42:11-22. |
5 | Davydov, M. and A.D. Krikorian. 2000. Eleutherococcus senticosus (Rupr. & Maxim.) Maxim.(Araliaceae) as an adaptogen: a closer look. J. Ethnopharmacol. 72:345-393. DOI |
6 | Evanno, G., S. Regnaut and J. Goudet. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14:2611-2620. DOI |
7 | Fang, J.N., A. Proksch and H. Wagner. 1985. Immunologically active polysaccharides of Acanthopanax senticosus. Phytochemistry 24:2619-2622. DOI |
8 | Hong, K.N. and J. W. Lee. 2015. Fine-scale spatial genetic and clonal structure of Eleutherococcus senticosus populations in South Korea. Forest Sci. Technol. 11: 160-165. DOI |
9 | Ishii, T., Y. Xu and S.R. McCouch. 2001. Nuclear-and chloroplastmicrosatellite variation in A-genome species of rice. Genome 44:658-666. DOI |
10 | Kim, J. and K.W. Chung. 2007. Isolation of new microsatellitecontaining sequences in Acanthopanax senticosus. J. Plant Biol. 50:557-561. DOI |
11 | Kim, K.Y. 2004. Developing one step program (SSR Manager) for rapid identification of clones with SSRs and primer designing. Department of Plant Science, MS. Thesis, Seoul National Univ., Korea. |
12 | Liu, K.J. and S.V. Muse. 2005. PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21:2128-2129. DOI |
13 | Konishi, T., H. Iwata, K. Yashiro, Y. Tsumura, R. Ohsawa, Y. Yasui and O. Ohnishi. 2006. Development and characterization of microsatellite markers for common buckwheat. Breed. Sci. 56:277-285. DOI |
14 | Lai, C.W.J., Q.Y. Yu, S.B. Hou, R.L. Skelton, M.R. Jones, K.L.T. Lewis, J. Murray, M. Eustice, P.Z. Guan, R. Agbayani, P.H. Moore, R. Ming and G.G. Presting. 2006. Analysis of papaya BAC end sequences reveals first insights into the organization of a fruit tree genome. Mol. Genet. Genomics 276:1-12. DOI |
15 | Lee, S., D. Son, J. Ryu, Y.S. Lee, S.H. Jung, J. Kang, S.Y. Lee, H.S. Kim and K.H. Shin. 2004. Anti-oxidant activities of Acanthopanax senticosus stems and their lignan components. Arch. Pharm. Res. 27:106-110. DOI |
16 | Ma, K.H., N.S. Kim, G.A. Lee, S.Y. Lee, J.K. Lee, J.Y. Yi, Y.J. Park, T.S. Kim, J.G. Gwag and S.J. Kwon. 2009. Development of SSR markers for studies of diversity in the genus Fagopyrum. Theor. Appl. Genet. 119:1247-1254. DOI |
17 | Pritchard, J.K., M. Stephens and P. Donnelly. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945-959. |
18 | Nishibe, S., H. Kinoshita, H. Takeda and G. Okano. 1990. Phenolic compounds from stem bark of Acanthopanax senticosus and their pharmacological effect in chronic swimming stressed rats. Chem. Pharm. Bull. 38:1763. DOI |
19 | Ogutu, C., T. Fang, L. Yan, L. Wang, L.F. Huang, X.Y. Wang, B.Q. Ma, X.B. Deng, A. Owiti, A. Nyende and Y.P. Han. 2016. Characterization and utilization of microsatellites in the Coffea canephora genome to assess genetic association between wild species in Kenya and cultivated coffee. Tree Genet. Genomes. 12. |
20 | Peakall, R. and P.E. Smouse. 2012. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research-an update. Bioinformatics 28:2537-2539. DOI |
21 | Schuelke, M. 2000. An economic method for the fluorescent labeling of PCR fragments. Nature Biotechnol. 18:233-234. DOI |
22 | Shultz, J.L., S. Kazi, R. Bashir, J.A. Afzal and D.A. Lightfoot. 2007. The development of BAC-end sequence-based microsatellite markers and placement in the physical and genetic maps of soybean. Theor. Appl. Genet. 114:1081-1090. DOI |
23 | Stajner, N., J. Jakse, P. Kozjak and B. Javornik. 2005. The isolation and characterisation of microsatellites in hop (Humulus lupulus L.). Plant Sci. 168:213-221. DOI |
24 | Tamanna, A. and A.U. Khan. 2005. Mapping and analysis of Simple Sequence Repeats in the Arabidopsis thaliana Genome. Bioinformation 1:64-68. DOI |
25 | Zhang, C.Z., B. Vornam, K. Volmer, K. Prinz, F. Kleemann, L. Kohler, A. Polle and R. Finkeldey. 2015. Genetic diversity in aspen and its relation to arthropod abundance. Front. Plant Sci. 5:806. |
26 | Tamura, K., J. Dudley, M. Nei and S. Kumar. 2007. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599. DOI |
27 | Wang, S.H., L. Bao, T.M. Wang, H.F. Wang and J.P. Ge. 2016. Contrasting genetic patterns between two coexisting Eleutherococcus species in northern China. Ecol. Evol. 6:3311-3324. DOI |
28 | Zalapa, J.E., T.C. Bougie, T.A. Bougie, B.J. Schlautman, E. Wiesman, A. Guzman, S. Steffan and T. Smith. 2015. Clonal diversity and genetic differentiation revealed by SSR markers in wild Vaccinium macrocarpon and Vaccinium oxycoccos. Ann. Appl. Biol. 166:196-207. DOI |
29 | Zhang, Q., B.Q. Ma, H. Li, Y.S. Chang, Y.Y. Han, J. Li, G.C. Wei, S. Zhao, M.A. Khan, Y. Zhou, C. Gu, X.Z. Zhang, Z.H. Han, S.S. Korban, S.H. Li and Y.P. Han. 2012. Identification, characterization, and utilization of genome-wide simple sequence repeats to identify a QTL for acidity in apple. BMC Genomics 13:537. DOI |
![]() |