• 제목/요약/키워드: genetic parameter estimates

검색결과 55건 처리시간 0.025초

Evaluation of models for estimation of genetic parameters for post-weaning body measurements and their association with yearling weight in Nellore sheep

  • Satish Kumar Illa;Gangaraju Gollamoori;Sapna Nath
    • Animal Bioscience
    • /
    • 제37권3호
    • /
    • pp.419-427
    • /
    • 2024
  • Objective: The objective of this study was to obtain (co) variance components and genetic parameter estimates for post-weaning body measurements such as body length (BL), height at withers (HW), and chest girth (HG) recorded at six (SBL, SHW, and SHG), nine (NBL, NHW, and NHG) and twelve (YBL, YHW, and YHG) months of age along with yearling weight (YW) in Nellore sheep maintained at livestock research station, Palamaner, Andhra Pradesh, India and also the association among body measurements with YW was studied. Methods: Data on 2,076 Nellore sheep (descended from 75 sires and 522 dams) recorded between 2007 and 2016 (10 years) were utilized in the study. Lambing year, sex of lamb, season of lambing and parity of dam were included in the model as fixed effects and ewe weight was kept as a covariate. Analyses were conducted with six animal models with different combinations of direct and maternal genetic effects using restricted maximum likelihood procedure. Best model for each trait was determined based on Akaike's information criterion. Results: Moderate estimates of direct heritability were obtained for the studied traits viz., BL (0.02 to 0.24), HW (0.31 to 0.49), and CG (0.08 to 0.35) and their corresponding maternal heritability estimates were in the range of 0.00 to 0.07 (BL), 0.13 to 0.17 (HW), and 0.07 to 0.13 (CG), respectively. Positive direct genetic and phenotypic correlations among the traits and they ranged from 0.07 (YBL-YW) to 0.99 (SBL-SHG, SHG-YW, and NBL-YBL) and 0.01 (SBL-YBL) to 0.99 (NBL-NHG), respectively. Further, the genetic correlations among all the body measurements and YW were positive and ranged from 0.07 (YW and YBL) to 0.99 (YW and SHG). Conclusion: There was a strong association of chest girth at six months with YW. Further, it is indicated that moderate improvement of post-weaning body measurements in Nellore sheep would be possible through selection.

Genetic Parameter Estimates of Carcass Traits under National Scale Breeding Scheme for Beef Cattle

  • Do, ChangHee;Park, ByungHo;Kim, SiDong;Choi, TaeJung;Yang, BohSuk;Park, SuBong;Song, HyungJun
    • Asian-Australasian Journal of Animal Sciences
    • /
    • 제29권8호
    • /
    • pp.1083-1094
    • /
    • 2016
  • Carcass and price traits of 72,969 Hanwoo cows, bulls and steers aged 16 to 80 months at slaughter collected from 2002 to 2013 at 75 beef packing plants in Korea were analyzed to determine heritability, correlation and breeding value using the Multi-Trait restricted maximum likelihood (REML) animal model procedure. The traits included carcass measurements, scores and grades at 24 h postmortem and bid prices at auction. Relatively high heritability was found for maturity ($0.41{\pm}0.031$), while moderate heritability estimates were obtained for backfat thickness ($0.20{\pm}0.018$), longissimus muscle (LM) area ($0.23{\pm}0.020$), carcass weight ($0.28{\pm}0.019$), yield index ($0.20{\pm}0.018$), yield grade ($0.16{\pm}0.017$), marbling ($0.28{\pm}0.021$), texture ($0.14{\pm}0.016$), quality grade ($0.26{\pm}0.016$) and price/kg ($0.24{\pm}0.025$). Relatively low heritability estimates were observed for meat color ($0.06{\pm}0.013$) and fat color ($0.06{\pm}0.012$). Heritability estimates for most traits were lower than those in the literature. Genetic correlations of carcass measurements with characteristic scores or quality grade of carcass ranged from -0.27 to +0.21. Genetic correlations of yield grade with backfat thickness, LM area and carcass weight were 0.91, -0.43, and -0.09, respectively. Genetic correlations of quality grade with scores of marbling, meat color, fat color and texture were -0.99, 0.48, 0.47, and 0.98, respectively. Genetic correlations of price/kg with LM area, carcass weight, marbling, meat color, texture and maturity were 0.57, 0.64, 0.76, -0.41, -0.79, and -0.42, respectively. Genetic correlations of carcass price with LM area, carcass weight, marbling and texture were 0.61, 0.57, 0.64, and -0.73, respectively, with standard errors ranging from ${\pm}0.047$ to ${\pm}0.058$. The mean carcass weight breeding values increased by more than 8 kg, whereas the mean marbling scores decreased by approximately 0.2 from 2000 through 2009. Overall, the results suggest that genetic improvement of productivity and carcass quality could be obtained under the national scale breeding scheme of Korea for Hanwoo and that continuous efforts to improve the breeding scheme should be made to increase genetic progress.

Reliability sensitivities with fuzzy random uncertainties using genetic algorithm

  • Jafaria, Parinaz;Jahani, Ehsan
    • Structural Engineering and Mechanics
    • /
    • 제60권3호
    • /
    • pp.413-431
    • /
    • 2016
  • A sensitivity analysis estimates the effect of the change in the uncertain variable parameter on the probability of the structural failure. A novel fuzzy random reliability sensitivity measure of the failure probability is proposed to consider the effect of the epistemic and aleatory uncertainties. The uncertainties of the engineering variables are modeled as fuzzy random variables. Fuzzy quantities are treated using the ${\lambda}$-cut approach. In fact, the fuzzy variables are transformed into the interval variables using the ${\lambda}$-cut approach. Genetic approach considers different possible combinations within the search domain (${\lambda}$-cut) and calculates the parameter sensitivities for each of the combinations.

Likelihood-Based Inference on Genetic Variance Component with a Hierarchical Poisson Generalized Linear Mixed Model

  • Lee, C.
    • Asian-Australasian Journal of Animal Sciences
    • /
    • 제13권8호
    • /
    • pp.1035-1039
    • /
    • 2000
  • This study developed a Poisson generalized linear mixed model and a procedure to estimate genetic parameters for count traits. The method derived from a frequentist perspective was based on hierarchical likelihood, and the maximum adjusted profile hierarchical likelihood was employed to estimate dispersion parameters of genetic random effects. Current approach is a generalization of Henderson's method to non-normal data, and was applied to simulated data. Underestimation was observed in the genetic variance component estimates for the data simulated with large heritability by using the Poisson generalized linear mixed model and the corresponding maximum adjusted profile hierarchical likelihood. However, the current method fitted the data generated with small heritability better than those generated with large heritability.

Genetic Parameters of Reproductive and Meat Quality Traits in Korean Berkshire Pigs

  • Lee, Joon-Ho;Song, Ki-Duk;Lee, Hak-Kyo;Cho, Kwang-Hyun;Park, Hwa-Chun;Park, Kyung-Do
    • Asian-Australasian Journal of Animal Sciences
    • /
    • 제28권10호
    • /
    • pp.1388-1393
    • /
    • 2015
  • Genetic parameters of Berkshire pigs for reproduction, carcass and meat quality traits were estimated using the records from a breeding farm in Korea. For reproduction traits, 2,457 records of the total number of piglets born (TNB) and the number of piglets born alive (NBA) from 781 sows and 53 sires were used. For two carcass traits which are carcass weight (CW) and backfat thickness (BF) and for 10 meat quality traits which are pH value after 45 minutes (pH45m), pH value after 24 hours (pH24h), lightness in meat color (LMC), redness in meat color (RMC), yellowness in meat color (YMC), moisture holding capacity (MHC), drip loss (DL), cooking loss (CL), fat content (FC), and shear force value (SH), 1,942 pig records were used to estimate genetic parameters. The genetic parameters for each trait were estimated using VCE program with animal model. Heritability estimates for reproduction traits TNB and NBA were 0.07 and 0.06, respectively, for carcass traits CW and BF were 0.37 and 0.57, respectively and for meat traits pH45m, pH24h, LMC, RMC, YMC, MHC, DL, CL, FC, and SH were 0.48, 0.15, 0.19, 0.36, 0.28, 0.21, 0.33, 0.45, 0.43, and 0.39, respectively. The estimate for genetic correlation coefficient between CW and BF was 0.27. The Genetic correlation between pH24h and meat color traits were in the range of -0.51 to -0.33 and between pH24h and DL and SH were -0.41 and -0.32, respectively. The estimates for genetic correlation coefficients between reproductive and meat quality traits were very low or zero. However, the estimates for genetic correlation coefficients between reproductive traits and drip and cooking loss were in the range of 0.12 to 0.17 and -0.14 to -0.12, respectively. As the estimated heritability of meat quality traits showed medium to high heritability, these traits may be applicable for the genetic improvement by continuous measurement. However, since some of the meat quality traits showed negative genetic correlations with carcass traits, an appropriate breeding scheme is required that carefully considers the complexity of genetic parameters and applicability of data.

유전자 알고리즘을 이용한 장·단기 유출모형의 매개변수 최적화 (Parameter Optimization of Long and Short Term Runoff Models Using Genetic Algorithm)

  • 김선주;지용근;김필식
    • 한국농공학회논문집
    • /
    • 제46권5호
    • /
    • pp.41-52
    • /
    • 2004
  • In this study, parameters of long and short term runoff model were optimized using genetic algorithm as a basic research for integrated water management in a watershed. In case of Korea where drought and flood occurr frequently, the integrated water management is necessary to minimize possible damage of drought and flood. Modified TANK model was optimized as a long term runoff model and storage-function model was optimized as a short term runoff model. Besides distinguished parameters were applied to modified TANK model for supplementing defect that the model estimates less runoff in the storm period. As a result of application, simulated long and short term runoff results showed 7% and 5% improvement compared with before optimized on the average. In case of modified TANK model using distinguished parameters, the simulated runoff after optimized showed more interrelationship than before optimized. Therefore, modified TANK model can be applied for the long term water balance as an integrated water management in a watershed. In case of storage-function model, simulated runoff in the storm period showed high interrelationship with observed one. These optimized models can be applied for the runoff analysis of watershed.

유전자 알고리즘을 이용한 파라미터 추정모드기반 하이브리드 퍼지 제어기의 설계 (The Design of Hybrid Fuzzy Controller Based on Parameter Estimation Mode Using Genetic Algorithms)

  • 이대근;오성권;장성환
    • 한국지능시스템학회:학술대회논문집
    • /
    • 한국퍼지및지능시스템학회 2000년도 춘계학술대회 학술발표 논문집
    • /
    • pp.228-231
    • /
    • 2000
  • A hybrid fuzzy controller by means of the genetic algorithms is presented. The control input for the system in the HFC is a convex combination of the FLC's output in transient state and PlD's output in steady state by a fuzzy variable. The HFC combined a PID controller with a fuzzy controller concurrently produces the better output performance than any other controller. A auto-tuning algorithms is presented to automatically improve the performance of hybrid fuzzy controller using genetic algorithms. The algorithms estimates automatical Iy the optimal values of scaling factors, PID parameters and membership function parameters of fuzzy control rules. Especially, in order to auto-tune scaling factors and PID parameters of HFC using GA three kinds of estimation modes are effectively utilized. The HFCs are applied to the second process with time-delay. Computer simulations are conducted at step input and the performances of systems are evaluated and also discussed in ITAE(Integral of the Time multiplied by the Absolute value of Error ) and other ways.

  • PDF

Genetic parameter analysis of reproductive traits in Large White pigs

  • Yu, Guanghui;Wang, Chuduan;Wang, Yuan
    • Animal Bioscience
    • /
    • 제35권11호
    • /
    • pp.1649-1655
    • /
    • 2022
  • Objective: The primary objective of this study was to determine the genetic parameters for reproductive traits among Large White pigs, including the following traits: total number born (TNB), number born alive (NBA), litter birth weight (LBW), average birth weight (ABW), gestation length (GL), age at first service (AFS) and age at first farrowing (AFF). Methods: The dataset consisted of 19,036 reproductive records from 4,986 sows, and a multi-trait animal model was used to estimate genetic variance components of seven reproductive traits. Results: The heritability estimates for these reproductive traits ranged from 0.09 to 0.26, with the highest heritability for GL and AFF, and the lowest heritability for NBA. The repeatabilities for TNB, NBA, LWB, ABW, and GL were ranged from 0.16 to 0.34. Genetic and phenotypic correlations ranged from -0.41 to 0.99, and -0.34 to 0.98, respectively. In particular, the correlations between TNB, NBA and LBW, between AFS and AFF, exhibited a strong positive correlation. Furthermore, for TNB, NBA, LBW, ABW, and GL, genetic correlations of the same trait between different parities were moderately to strongly correlated (0.32 to 0.97), and the correlations of adjacent parities were higher than those of nonadjacent parities. Conclusion: All the results in the present study can be used as a basis for the genetic assessment of the target population. In the formulation of dam line selection index, AFS or AFF can be considered to combine with TNB in a multiple trait swine breeding value estimation system. Moreover, breeders are encouraged to increase the proportion of sows at parity 3-5 and reinforce the management of sows at parity 1 and parity ≥8.

Estimation of heritability and genetic correlation of body weight gain and growth curve parameters in Korean native chicken

  • Manjula, Prabuddha;Park, Hee-Bok;Seo, Dongwon;Choi, Nuri;Jin, Shil;Ahn, Sung Jin;Heo, Kang Nyeong;Kang, Bo Seok;Lee, Jun-Heon
    • Asian-Australasian Journal of Animal Sciences
    • /
    • 제31권1호
    • /
    • pp.26-31
    • /
    • 2018
  • Objective: This study estimated the genetic parameters for body weight gain and growth curve parameter traits in Korean native chicken (KNC). Methods: A total of 585 $F_1$ chickens were used along with 88 of their $F_0$ birds. Body weights were measured every 2 weeks from hatching to 20 weeks of age to measure weight gain at 2-week intervals. For each individual, a logistic growth curve model was fitted to the longitudinal growth dataset to obtain three growth curve parameters (${\alpha}$, asymptotic final body weight; ${\beta}$, inflection point; and ${\gamma}$, constant scale that was proportional to the overall growth rate). Genetic parameters were estimated based on the linear-mixed model using a restricted maximum likelihood method. Results: Heritability estimates of body weight gain traits were low to high (0.057 to 0.458). Heritability estimates for ${\alpha}$, ${\beta}$, and ${\gamma}$ were $0.211{\pm}0.08$, $0.249{\pm}0.09$, and $0.095{\pm}0.06$, respectively. Both genetic and phenotypic correlations between weight gain traits ranged from -0.527 to 0.993. Genetic and phenotypic correlation between the growth curve parameters and weight gain traits ranged from -0.968 to 0.987. Conclusion: Based on the results of this study population, we suggest that the KNC could be used for selective breeding between 6 and 8 weeks of age to enhance the overall genetic improvement of growth traits. After validation of these results in independent studies, these findings will be useful for further optimization of breeding programs for KNC.

버크셔종의 육질형질에 대한 유전모수 추정 (Genetic Parameter Estimates for Meat Quality Traits in Berkshire Pigs)

  • 정종현;김철욱;박범영;최종순;박화춘
    • Journal of Animal Science and Technology
    • /
    • 제53권4호
    • /
    • pp.289-296
    • /
    • 2011
  • 본 연구는 2004년~2008년에 미국에서 도입한 버크셔종의 육질 형질에 대한 유전적 특성을 파악하고, 향후 선발에 이용한 유전적 그룹(genetic group)을 분리하여 선발 및 교배계획을 체계적으로 세워 효과를 극대화시키는 전략을 세우고자 수행하였다. 그 결과 사후 대사율의 척도인 근육의 사후 45분 pH, 24시간 pH에 대한 유전력은 각각 0.60과 0.61로 높게 조사되었다. 육색의 척도인 명도, 적색도 및 황색도의 유전력은 0.56, 0.58 및 0.62로 조사되었다. 근내지방도, 유리육즙량과 가열감량에 대한 유전력은 각각 0.57, 0.51 및 0.66으로 조사되었다. 본 연구 결과로 미루어 볼 때 육질형질의 개량에 있어 육종가를 기초로 하여 선발에 활용할 경우 유전적 개량량은 크게 나타날 것으로 사료된다. 또한 사후 대사율의 척도인 pH와 육질형질과의 상관도는 높은 연관성이 존재하므로, 종돈장에서 육질형질을 개량하고자 한다면 육종가를 기반으로 한 선발지수(selection index)를 활용하면 매우 효과적일 것으로 필자는 사료된다. 그러나 본 연구에 활용된 자료는 유전모수를 추정하는데 다소 부족한 것은 사실이지만 국내 최초로 돼지의 육질형질에 대한 유전모수를 추정하는데 있어 매우 의미가 있다고 할 수 있다.