• Korean Journal of Ecology and Environment
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• v.54 no.1
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• pp.71-77
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• 2021

Using data from flies collected with pitfall traps in 365 forests on a nationwide scale in Korea, the abundance and distribution changes of two families (Phoridae and Lauxaniidae) in Korean forests were predicted at the genus level according to two climate change scenarios: RCP 4.5 and RCP 8.5. The most suitable temperature for the 17 major genera was estimated using a weighted average regression model. Stichillus and Anevrina displayed the lowest optimum temperature with 7.6℃ and 8.5℃ in annual mean temperature, respectively, whereas Chonocephalus had the highest optimum temperature with 12.1℃. Among thirty genera, seven genera (four from Phoridae and three from Lauxaniidae), which showed their abundance in a bell-type or linear pattern along the temperature gradient, were used for predicting the distribution changes according to the future climate change scenarios. All the taxa of this study are expected to decrease in abundance and distribution as a function of temperature increase. Moreover, cold-adapted taxa were found to be more affected than warm-adapted taxa.

• Journal of Forest and Environmental Science
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• v.37 no.2
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• pp.163-167
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• 2021

Mushroom survey and collection were conducted in the Dong Hua Sao National Biodiversity Conservation Area (DHSNBCA), which is located about 30 km east of Pakse and about 10 km south of the town of Paksong, Champasak Province of Lao-PDR, from from at the early July to October in 2019. During this periods, mushroom specimens were collected from 6 different locations, and then they were identified and classified into 103 species, 74 genera, 37 families, 15 orders and 6 classes by morphological and molecular analyses. The mushrooms belongs to Ascomycota were classified into 10 species, 6 genera, 4 families, 3 orders and 2 classes, while those belongs to Basidiomycota were classified into 92 species, 67 genera, 32 families, 11 orders, and 3 classes, respectively. In addition, 1 species of Myxomycota was also identified. Among these mushrooms, the most species-rich families are Marasmiaceae (17.3%), Polyporaceae (13.1%), Mycenaceae (8.9%), Agricaceae (8.3%), Xylariaceae (6.5%), Auriculariaceae (4.8%), Ganodermtaceae (3.6%), Dacrymycetaceae (3.0%), Meruliaceae (3.0%), Russulaceae (3.0%) and comprised 71.4% of the total specimens identified.

• Parasites, Hosts and Diseases
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• v.60 no.4
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• pp.273-279
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• 2022

Laelapinae mites are involved in transmission of microbial diseases between wildlife and humans, with an impact on public health. In this study, 5 mite members in the subfamily Laelapinae (laelapin mites; LM) were morphologically identified by light microscopy, and the phylogenetic relationship of LM was analyzed in combination with the sequence information of part of the LM cytochrome oxidase subunit I (cox1) gene. The morphological identification revealed that 5 mites belonged to the genera Laelaps and Haemolaelaps, respectively. Sequence analysis showed that the ratio of nonsynonymous mutation rate to synonymous mutation rate of LM was less than 1, indicating that the LM cox1 gene had undergone purifying selection. Phylogenetic analysis showed that the Laelapinae is a monophyletic group. The genera Haemolaelaps and Hyperlaelaps did not separated into distinct clades but clustered together with species of the genus Laelaps. Our morphological and molecular analyses to describe the phylogenetic relationships among different genera and species of Laelapinae provide a reference for the improvement and revision of the LM taxonomy system.

• The Korea Journal of Herbology
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• v.33 no.1
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• pp.77-84
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• 2018

Objective : For the purpose of developing Cupressaceae plants recorded in Korean Herbology in Korea, the literatures of the successive generations have been thoroughly investigated to prepare this article. Methods : Books and research papers about Herbology which published at Korea and other countries were examined. Results : A list was made about Cupressaceae plant which were cultivated or grew naturally in Korea, after investigated the data on domestic and foreign Cupressaceae plants. Out of those lists, serviceable plants were selected and with those available plants, their distributions were analysed and parts which can be used as medicines were divided into 3 categories such as oriental medicine name, scientific name and non-official name. Cupressaceae's properties flavor, channels they use, effects, and toxicity were also noted. Cupressaceae(grew in Korea) were divided into 4 classes with 20 species. Out of those, 2 classes with 4 species were found serviceable which indicates 20% of all. Out of all 20 species of Cupressaceae family, Juniperus genus were found 12 species, which were shown the most. Among 2 genus of Cupressaceae species, medicinal plants Juniperus genus and Thuja genus were found 2 species each. Out of all serviceable parts in Cupressaceae, Folium parts took first place as 4 species. The research also suggests that there are 1 species and 1 parts which are toxic. Conclusion : There were totaled to 4 genera and 20 species in Cupressaceae in Korea and among them medicinal plants are 2 genera, 4 species, some 20% in total.

• The Korea Journal of Herbology
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• v.33 no.1
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• pp.57-63
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• 2018

Objective : For the purpose of developing Magnoliaceae plants recorded in Korean Herbology in Korea, the literatures of the successive generations have been thoroughly investigated to prepare this article. Methods : Books and research papers about Herbology which published at Korea and other countries were examined. Results : A list was made about Magnoliaceae plant which were cultivated or grew naturally in Korea, after investigated the data on domestic and foreign Magnoliaceae plants. Out of those lists, serviceable plants were selected and with those available plants, their distributions were analysed and parts which can be used as medicines were divided into 3 categories such as oriental medicine name, scientific name and non-official name. Magnoliaceae's properties flavor, channels they use, effects, and toxicity were also noted. Magnoliaceae(grew in Korea) were divided into 5 classes with 16 species. Out of those, 3 classes with 5 species were found serviceable which indicates 32% of all. Out of all 16 species of Magnoliaceae family, Magnolia genus were found 7 species, which were shown the most. Among 3 genus of Magnolia species, medicinal plants were all one species each. Out of all serviceable parts in Magnoliaceae, Flos parts took first place as 3 species. There are no toxic, the survey said. Conclusion : There were totaled to 5 genera and 16 species in Magnoliaceae in Korea and among them medicinal plants are 3 genera, 5 species, some 32% in total.

• Journal of Conservation Science
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• v.38 no.4
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• pp.254-264
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• 2022

Built in the 6th and 7th centuries during the Baekje period, the Buyeo Royal Tombs consist of seven tombs, including Tomb No. 1, which contains murals. To preserve Tomb No. 1 from damage caused by microorganisms, periodic microbial-distribution investigations are conducted. Following such investigations in August 2016, June 2018, and November 2019, the microbes were classified according to the investigation period, location of collection, and space. This study compares and analyzes the results. The concentration of airborne microorganisms in Tomb No. 1 and the number of microbial genera identified in each space of the tomb decreased as proximity to the main room with murals diminished. During the investigation period, the genera Bacillus, Cladosporium, Penicillium, and Streptomyces were commonly identified on Tomb No. 1. The microorganisms collected from the main room walls were mostly isolated from the east and west walls where the genera Bacillus, Cupriavidus, Paenibacillus, Pseudomonas, and Streptomyces were commonly identified in three or more walls. In particular, the genus Streptomyces is a dangerous strain capable of damaging murals by penetrating into and discoloring the pigments on them. The data generated from this study may be useful for future research on microbial distribution in other domestic mural tombs and those located in North Korea and abroad.

• Mycobiology
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• v.50 no.5
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• pp.345-356
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• 2022

The fungal distribution, diversity, and load were analyzed in the geographically segregated island groundwater systems in Korea. A total of 79 fungal isolates were secured from seven islands and identified based on the internal transcribed spacer (ITS) sequences. They belonged to three phyla (Ascomycota, Basidiomycota, and Chlorophyta), five classes, sixteen orders, twenty-two families, and thirty-one genera. The dominant phylum was Ascomycota (91.1%), with most fungi belonging to the Cladosporium (21.5%), Aspergillus (15.2%), and Stachybotrys (8.9%) genera. Cladosporium showed higher dominance and diversity, being widely distributed throughout the geographically segregated groundwater systems. Based on the diversity indices, the genera richness (4.821) and diversity (2.550) were the highest in the groundwater system of the largest scale. As turbidity (0.064-0.462) increased, the overall fungal count increased and the residual chlorine (0.089-0.308) had low relevance compared with the total count and fungal diversity. Cladosporium showed normal mycelial growth in de-chlorinated sterilized samples. Overall, if turbidity increases under higher fungal diversity, bio-deterioration in groundwater-supplying facilities and public health problems could be intensified, regardless of chlorine treatment. In addition to fungal indicators and analyzing methods, physical hydrostatic treatment is necessary for monitoring and controlling fungal contamination.

• Journal of Microbiology and Biotechnology
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• v.33 no.3
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• pp.319-328
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• 2023

Malassezia and Staphylococcus are the most dominant genera in human skin microbiome. To explore the inter-kingdom interactions between the two genera, we examined the transcriptional changes in Malassezia and Staphylococcus species induced upon co-culturing. RNA-seq analyses revealed that genes encoding ribosomal proteins were upregulated, while those encoding aspartyl proteases were downregulated in M. restricta after co-culturing with Staphylococcus species. We identified MRET_3770 as a major secretory aspartyl protease coding gene in M. restricta through pepstatin-A affinity chromatography followed by mass spectrometry and found that the expression of MRET_3770 was significantly repressed upon co-culturing with Staphylococcus species or by incubation in media with reduced pH. Moreover, biofilm formation by Staphylococcus aureus was inhibited in the spent medium of M. restricta, suggesting that biomolecules secreted by M. restricta such as secretory aspartyl proteases may degrade the biofilm structure. We also examined the transcriptional changes in S. aureus co-cultured with M. restricta and found co-cultured S. aureus showed increased expression of genes encoding ribosomal proteins and downregulation of those involved in riboflavin metabolism. These transcriptome data of co-cultured fungal and bacterial species demonstrate a dynamic interplay between the two co-existing genera.

• Food Science of Animal Resources
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• v.44 no.2
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• pp.390-407
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• 2024

Kuflu cheese, a popular variety of traditional Turkish mold-ripened cheeses, is characterized by its semi-hard texture and blue-green color. It is important to elucidate the microbiota of Kuflu cheese produced from raw milk to standardize and sustain its sensory properties. This study aimed to examine the bacteria, yeasts, and filamentous mold communities in Kuflu cheese using high-throughput amplicon sequencing based on 16S and ITS2 regions. Lactococcus, Streptococcus, and Staphylococcus were the most dominant bacterial genera while Bifidobacterium genus was found to be remarkably high in some Kuflu cheese samples. Penicillium genus dominated the filamentous mold biota while the yeasts with the highest relative abundances were detected as Debaryomyces, Pichia, and Candida. The genera Virgibacillus and Paraliobacillus, which were not previously reported for mold-ripened cheeses, were detected at high relative abundances in some Kuflu cheese samples. None of the genera that include important food pathogens like Salmonella, Campylobacter, Listeria were detected in the samples. This is the first experiment in which the microbiota of Kuflu cheeses were evaluated with a metagenomic approach. This study provided an opportunity to evaluate Kuflu cheese, which was previously examined for fungal composition, in terms of both pathogenic and beneficial bacteria.

• Animal Systematics, Evolution and Diversity
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• v.40 no.3
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• pp.167-210
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• 2024

Twelve species of cyclopoid copepods, including two new genera and ten new species, associated with polychaetes are described from Korea. The new taxa comprise Petalocopus planus n. gen. n. sp. in the Clausidiidae, Rhodinicola exilis n. sp. in the Clausiidae, Gastrodelphys vadicola n. sp. in the Gastrodelphyidae, Polyankylis estivalis n. sp. in the Polyankyliidae, Pentakela cylindrica n. gen. n. sp., Pseudanthessius oporinus n. sp. and P. petilus n. sp. in the Pseudanthessiidae, and Myxomolgus buanensis n. sp., M. dokdoicus n. sp. and Serpuliphilus antennatus n. sp. in the Sabelliphilidae. As characteristic features of the new genera, Petalocopus n. gen. has a pair of pedunculate suckers on the terminal segment of the antenna and an enlarged posterodistal seta on the second segment of antennule, and Pentakela n. gen. has five strong hooks on distal segments of antenna, three-segmented exopod and two-segmented endopod in legs 1 and 2, and one-segmented exopod and a lobate, rudimentary endopod in legs 3 and 4. The male of Maxilliclausia propria Kim, 2014 of the Clausiidae is recorded for the first time. Nereicola ovata Keferstein, 1863 known previously only in European waters is redescribed based on a newly collected female specimen from Korea.