• Biotechnology and Bioprocess Engineering:BBE
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• v.5 no.6
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• pp.387-394
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• 2000

The relationship between Man and yeast has been a successful and enduring one. The characteristics of yeast have made it an ideal tool in scientific research and as such, it has been used extensively. In this review some of the advantages, methods and applications of yeasts in the biosensor field are outlined. In doing so, we propose a eukaryotic alternative to the current battery of bacteria-based microbial biosensors.

• Bulletin of the Korean Chemical Society
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• v.32 no.8
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• pp.2830-2832
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• 2011

• Animal Systematics, Evolution and Diversity
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• v.37 no.4
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• pp.280-286
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• 2021

During a field survey on Korean coastal marine waters, two ciliates belonging to the genera Pseudovorticella Foissner & Schiffmann, 1975 and Frontonia Ehrenberg, 1838 in the class Oligohymenophorea de Puytorac et al., 1974, were collected. Even though the two genera are very common in the aquatic ecosystems, they had been superficially studied in Korean habitats. Using the observation of living cells and specimens impregnated by protargol, silver carbonate, and silver nitrate, two newly recorded ciliate are identified as P. paramarina Sun, Ji, Warren & Song, 2009 and F. ocularis Bullington, 1939. A brief diagnosis, remark, and comprehensive micrographs are provided for each species.

• Molecules and Cells
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• v.28 no.3
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• pp.149-154
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• 2009

Faithful and accurate replication of the DNA molecule is essential for eukaryote organisms. Nonetheless, in the last few years it has become evident that inheritance of the chromatin states associated with different regions of the genome is as important as the faithful inheritance of the DNA sequence itself. Such chromatin states are determined by a multitude of factors that act to modify not only the DNA molecule, but also the histone proteins associated with it. For instance, histones can be posttranslationally modified, and it is well established that these posttranslational marks are involved in several essential nuclear processes such as transcription and DNA repair. However, recent evidence indicates that posttranslational modifications of histones might be relevant during DNA replication. Hence, the aim of this review is to describe the most recent publications related to the role of histone posttranslational modifications during DNA replication.

• 한국생물공학회:학술대회논문집
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• 2002.04a
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• pp.543-547
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• 2002

DNA vaccines use eukaryote expression vectors to produce immunizing proteins in the vaccinated host and it represents a novel approach to vaccine and immuno-therapeutic development. We constructed a 2.9 kb compact plasmid vector (pVAC) which contains CMV promoter, polycloning site, BGH poly A terminator, ampicillin resistance gene and PBR322 origin. Enriched unmathlyated CpG motifs have introduced into pVAC-ISS1 and pVAC-ISS2 which are derived from pVAC for enhancing Thl responses. These plasmid DNAs rapidly induced interleukin 6 secretion in vivo. It is expected that these vectors will contribute to the DNA inoculation against infectious disease and various cancers without adjuvant.

• Fisheries and Aquatic Sciences
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• v.17 no.3
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• pp.339-344
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• 2014

PCR amplification with universal primer is a useful tool for speciation of symbionts in marine eukaryote coupled with robust separation method such as denaturing high performance chromatography (DHPLC). To overcome the biased amplification, clamping PCR is recommended to suppress the amplification of host gene. In this study, we evaluated the efficiency of rare gene detection for two kinds of clamping probes which were successfully utilized for eukaryotic symbiont analysis: C3 linked nucleotide (C3) and peptide nucleic acid (PNA). PNA was 3-4 orders of magnitude higher than that of C3 tested in clamping efficiency and rare gene detection. This represented that PNA could be a more competent clamping probe for the enhancement of PCR amplification for rare symbiont genes.

• Mycobiology
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• v.41 no.1
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• pp.1-12
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• 2013

Msi1-like (MSIL) proteins, which are eukaryote-specific and contain a series of WD40 repeats, have pleiotropic roles in chromatin assembly, DNA damage repair, and regulation of nutrient/stress-sensing signaling pathways. In the fungal kingdom, the functions of MSIL proteins have been studied most intensively in the budding yeast model Saccharomyces cerevisiae, an ascomycete. Yet their functions are largely unknown in other fungi. Recently, an MSIL protein, Msl1, was discovered and functionally characterized in the pathogenic yeast Cryptococcus neoformans, a basidiomycete. Interestingly, MSIL proteins appear to have redundant and unique roles in both fungi, suggesting that MSIL proteins may have evolutionarily divergent roles in different parts of the fungal kingdom. In this review, we will describe the current findings regarding the role of MSIL proteins in fungi and discuss future directions for research on this topic.

• Journal of Species Research
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• v.10 no.2
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• pp.142-153
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• 2021

Algal genomics approaches provide a massive number of genome/transcriptome sequences and reveal the evolutionary history vis-à-vis primary and serial endosymbiosis events that contributed to the biodiversity of photosynthetic eukaryotes in the eukaryote tree of life. In particular, phylogenomic methods using several hundred or thousands of genes have provided new insights into algal taxonomy and systematics. Using this method, many novel insights into algal species diversity and systematics occurred, leading to taxonomic revisions. In addition, horizontal gene transfers (HGTs) of functional genes have been identified in algal genomes that played essential roles in environmental adaptation and genomic diversification. Finally, algal genomics data can be used to address the pangenome, including core genes shared among all isolates and partially shared strain-specific genes. However, some aspects of the pangenome concept (genome variability of intraspecies level) conflict with population genomics concepts, and the issue is closely related to defining species boundaries using genome variability. This review suggests a desirable future direction to merge algal pangenomics and population genomics beyond traditional molecular phylogeny and taxonomy.

• Journal of Species Research
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• v.12 no.1
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• pp.95-108
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• 2023

Ciliates are unicellular eukaryotes and one of the most abundant and speciose protistan groups. However, their diversity is underestimated, and many new species are waiting for our discovery. During several field surveys conducted from 2018 to 2021 to document indigenous Korean ciliates, 10 unrecorded ciliate species were collected and investigated from freshwater, marine, and semiterrestrial habitats. The morphology of these species was studied based on observation of living and protargol-stained specimens. These species belong to five classes as follows: 1) class Heterotrichea - Peritromus faurei; 2) class Spirotrichea - Heterotachysoma dragescoi, Pseudokeronopsis parasongi, and Certesia quadrinucleata; 3) class Nassophorea - Chilodontopsis depressa; 4) class Prostomatea - Plagiocampa rouxi and Urotricha furcata; and 5) class Oligohymenophorea - Metanophrys similis, Uronema gallicum, and Protocyclidium citrullus. Also, we provide a brief diagnosis, photomicrographs, and information of the locality for each species. Further, we compare each species with the most recent description and with similar congeners.

• Korean Journal of Microbiology
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• v.53 no.4
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• pp.292-296
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• 2017

In eukaryote, THO/TREX complex plays a critical role in transcriptional elongation, pre-mRNA processing, and nuclear mRNA export. This complex is evolutionally well- conserved, but there are some differences in composition and function according to organisms. Here we showed that spTex1, a component of THO/TREX complex, is not essential for growth and mRNA export in a fission yeast, Schizosaccharomyces pombe, which is more similar to higher eukaryote than budding yeast. Deletion and overexpression of the spTex1 gene do not lead to any detectable growth phenotype and accumulation of poly(A)+ RNA in the nucleus. And the spTex1-GFP protein is localized mainly in the nucleus. Yeast two-hybrid and Co-immunoprecipitation analysis showed that the spTex1 protein interacted with spHpr1 (THOC1) and spTho2 (THOC2), main subunits of THO complex. We conclude that the S. pombe Tex1 is a component of THO/TREX complex, but does not plays important roles in growth and bulk mRNA export from the nucleus.