• Title/Summary/Keyword: data similarity

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Molecular Monitoring of Eukaryotic Plankton Diversity at Mulgeum and Eulsukdo in the Lower Reaches of the Nakdong River (낙동강 하류 물금과 을숙도 수환경의 진핵 플랑크톤 종조성에 대한 분자모니터링)

  • Lee, Jee Eun;Lee, Sang-Rae;Youn, Seok-Hyun;Chung, Sang Ok;Lee, Jin Ae;Chung, Ik Kyo
    • The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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    • v.17 no.3
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    • pp.160-180
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    • 2012
  • We have studied the eukaryotic plankton species diversity to compare the community structure of fresh and brackish waters in the lower reaches of the Nakdong River using metagenomic methods. We constructed 18S rDNA clone libraries of total DNAs extracted from environmental water samples collected at Mulgeum (MG100929, fresh) and Eulsukdo bridge (ES, brackish). Through the steps of colony PCR, PCR-RFLP, sequencing and similarity analysis, we discovered the diverse species composition of eukaryotic plankton. Total 338 clones (170 at MG100929 and 168 at ES) were analyzed, and then we found 74 phylotypes (49 for MG100929 and 25 for ES). From the phylogenetic analysis, we confirmed various eukaryotic plankton of broad range of taxonomic groups, including Stramenopiles, Cryptophyta, Viridiplantae, Alveolata, Rhizaria, Metazoa, and Fungi. We also found several unreported species in Korea and candidates of new taxonomic entities at levels higher than genus. Especially, the cryptic species diversity including unreported phylotypes of Pirsonia (Stramenopiles) and Perkinsea (Alveolata) suggests that the molecular monitoring method can produce new informative biological data in monitoring the changes in the Nakdong River Mouth ecosystem.

Thomas Young's Problem Solving through Analogical Reasoning in the Process of Light Inference Theory Formation and Its Implications for Scientific Creativity Education (창의적 과학자 토마스 영(T. Young)의 빛의 간섭 이론 형성과정에서의 비유추론을 통한 문제해결과 과학창의성 교육적 함의)

  • Kim, Wonsook;Kim, Youngmin;Seo, Hae-Ae;Park, Jongseok
    • Journal of Gifted/Talented Education
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    • v.23 no.5
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    • pp.817-833
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    • 2013
  • The study aims to analyze Thomas Young's problem solving processes of analogical reasoning during the formation of the interference theory of light, and to draw its implications for secondary science education, particularly for enhancing creativity in science. The research method employed in the study was literature review of the papers which Young himself had written about sound wave and property of light. His thinking processes and specific features in his thought that were obtained through analysis of his papers about light are as follows: Young reconsidered Newton's experiments and observations, and reinterpreted Newton's results in the new viewpoints. Through this analysis, Young discovered that Newton's interpretation about his own experiments and observations was faulty in a certain point of view and new interpretation is necessary. Based on the data, it is hypothesized that colors observed on thin plates and colors appeared repeatedly on Newton's ring are appeared because of the effect of light interference. Young used analogical reasoning during the process of inference of similarity between sound and light. And he formulated an hypothesis on the interference of light through using abductive reasoning from interference of water wave, and proved the hypothesis by constructing an creative experimental device, which is called a critical experiment. It is implicated that the analogical reasoning and experimental devices for explaining the light interference which Young created and used can be utilized for school science education enhancing creativity in science.

A Thermostable Protease Produced from Bacillus sp. JE 375 Isolated from Korean Soil (한국의 토양으로부터 내열성 단백질 분해효소를 생산하는 Bacillus sp. JE 375의 선별)

  • Kim, Ji-Eun;Bai, Dong-Hoon
    • Korean Journal of Food Science and Technology
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    • v.38 no.3
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    • pp.419-426
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    • 2006
  • A thermophilic microorganism, strain JE 375, which produces a thermostable protease, was isolated from soil and compost in Korea. This gram-positive, rod-shaped, catalase positive, motility positive, and hemolysis ${\beta}$ containing organism was implicated in glucose fermentation, mannitol fermentation, xylose oxidation, aerobic activity and spore formation. The color of the colony was yellowish white. The temperature range for growth at pH 6.5 was between 55 and $70^{\circ}C$, with an optimum growth temperature of $65^{\circ}C$. This result confirmed the strain JE 375 as a thermophilic microorganism. The enzyme was produced aerobically at $65^{\circ}C$ during 20 hr in a medium (pH 6.5) containing 1% trypton. 1% maltose, 0.5% yeast extract and 1% NaCl. The 16S rDNA of strain JE 375 had 97.6% sequence similarity with the 16S rDNA of Bacillus caldoxyloyticus. On the basis of biochemical and physiological properties and phylogenetic analysis, we named the isolated strain as Bacillus sp. JE 375. The thermostable protease from Bacillus sp. JE 375 had been partially purified and characterized. The molecular weight of the enzyme was deduced from SDS-PAGE and gel chromatography as 55 kDa and its optimal temperature was $60^{\circ}C$. The enzyme showed its highest activity at pH 7.5 and was stable from pH 7.0 to 8.0.

Estimation of source signal and channel response using ray-based blind deconvolution technique for Doppler-shifted underwater channel (음선 기반 블라인드 디컨볼루션 기법을 이용한 수중 도플러 편이 채널에서의 송신 신호 및 채널 응답 추정)

  • Byun, Gi Hoon;Oh, Se Hyun;Byun, Sung-Hoon;Kim, J.S.
    • The Journal of the Acoustical Society of Korea
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    • v.35 no.5
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    • pp.331-339
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    • 2016
  • This paper suggests an estimation method of the source signal and the channel impulse response (CIR) using ray-based blind deconvolution (RBD) in the underwater acoustic channel environment where Doppler effect exists by the relative motion between source and receiver. It is difficult to estimate the CIR on Doppler effect by the matched filter with a highly Doppler-sensitive waveform such as the m-sequence signal because Doppler shift can severely degrade the correlation between the received signal corrupted by Doppler effect and the original source signal. In this study, the Doppler-shifted source-signal's phase is estimated using the RBD, and the received signal is compensated by it to obtain the Doppler-corrected CIR. It is verified that using the matched filter with the received signal from the experimental data fails to estimate the CIR while the obtained CIR by the suggested method has the similarity to the propagation path of the ray model. Also, the results show that the reconstructed source signal using the RBD has the better Doppler shift compensation than the Doppler-shifted source signal derived from scattering function.

On-line Handwriting Chinese Character Recognition for PDA Using a Unit Reconstruction Method (유닛 재구성 방법을 이용한 PDA용 온라인 필기체 한자 인식)

  • Chin, Won;Kim, Ki-Doo
    • Journal of the Institute of Electronics Engineers of Korea SP
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    • v.39 no.1
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    • pp.97-107
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    • 2002
  • In this paper, we propose the realization of on-line handwritten Chinese character recognition for mobile personal digital assistants (PDA). We focus on the development of an algorithm having a high recognition performance under the restriction that PDA requires small memory storage and less computational complexity in comparison with PC. Therefore, we use index matching method having computational advantage for fast recognition and we suggest a unit reconstruction method to minimize the memory size to store the character models and to accomodate the various changes in stroke order and stroke number of each person in handwriting Chinese characters. We set up standard model consisting of 1800 characters using a set of pre-defined units. Input data are measured by similarity among candidate characters selected on the basis of stroke numbers and region features after preprocessing and feature extracting. We consider 1800 Chinese characters adopted in the middle and high school in Korea. We take character sets of five person, written in printed style, irrespective of stroke ordering and stroke numbers. As experimental results, we obtained an average recognition time of 0.16 second per character and the successful recognition rate of 94.3% with MIPS R4000 CPU in PDA.

Morphological Characteristics and Genetic Diversity Analysis of Cultivated Sancho (Zanthoxylum schinifolium) and Chopi (Zanthoxylum piperitum) in Korea (국내 재배지의 산초(Zanthoxylum schinifolium)와 초피(Zanthoxylum piperitum)의 형태학적 특성과 유전적 다양성)

  • Ryu, Jaihyunk;Choi, Hae-Sik;Lyu, Jae-il;Bae, Chang-Hyu
    • Korean Journal of Plant Resources
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    • v.29 no.5
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    • pp.555-563
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    • 2016
  • The morphological characteristics and genetic relationships among 32 germplasms of Zanthoxylum schinifolium and Zanthoxylum piperitum collected from two farms in Korea were investigated. The traits with the most variability were seed color, leaf size, and spine size. The intraspecific polymorphism of Z. schinifolium and Z. piperitum was 96.5% and 60.3%, respectively. The genetic diversity and Shannon’s information index values ranged from 0.11 to 0.33 and 0.19 to 0.50, with average values of 0.26 and 0.42, respectively. Two ISSR primers (UBC861 and UBC862) were able to distinguish the different species. The genetic similarity matrix (GSM) revealed variability among the accessions ranging from 0.116 to 0.816. The intraspecific GSM for Z. schinifolium and Z. piperitum was 0.177-0.780 and 0.250-0.816, respectively. The GSM findings indicate that Z. schinifolium and Z. piperitum accessions have high genetic diversity and possess germplasms qualifying as good genetic resources for cross breeding. The clustering analysis separated Z. schinifolium and Z. piperitum into independent groups, and all accessions could be classified into three categories. Z. Schinifolium var. nermis belonged to independent groups. Comparison of the clusters based on morphological analysis with those based on ISSR data resulted in an unclear pattern of division among the accessions. The study findings indicate that Z. schinifolium and Z. piperitum accessions have genetic diversity, and ISSR markers were useful for identifying Z. schinifolium and Z. piperitum.

Rb-Sr Isotope Geochemistry in Seokmodo Granitoids and Hot Spring, Gangwha: An Application of Sr Isotope for Clarifying the Source of Hot Spring (강화 석모도 화강암류와 온천수의 지구화학: 온천수의 기원규명을 위한 Sr 동위원소의 응용)

  • Lee Seung-Gu;Kim Tong-Kwon;Lee Jin-Soo;Song Yoon-Ho
    • The Journal of the Petrological Society of Korea
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    • v.15 no.2 s.44
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    • pp.60-71
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    • 2006
  • The Seokmodo consists mainly of biotite granite and granodiorite. The biotite granite is divided into the south and the north part by granodiorite. There occurs high temperature hot spring of which temperature is up to $72^{\circ}C$. The Rb-Sr isotopic data for the biotite granite define whole-rock isochron ages of $207{\pm}70$ Ma with initial Sr isotopic ratio of 0.7132 in north part and $132{\pm}50$ Ma with initial Sr isotopic ratio of 0.7125 in south part, suggesting that the magma be derived from the crustal source material. The geochemical characteristics of the biotite granite and hornblende granodiorite indicate that they were crystallized from calc-alkaline under syn-collisional tectonic environment. The samples of hot spring were collected at March 2005 and March 2006. The $^{87}Sr/^{86}Sr$ ratios of hot spring are 0.714507 and 0.714518, respectively and correspond to those oi the granite being occurred at the south part. The similarity of $^{87}Sr/^{86}Sr$ ratios between the granite and hot spring strongly suggests that the hot spring might be derived from the Seokmodo biotite granite.

Analysis of Association between Mood of Music and Folksonomy Tag (음악의 분위기와 폭소노미 태그의 관계 분석)

  • Moon, Chang Bae;Kim, HyunSoo;Jang, Young-Wan;Kim, Byeong Man
    • Science of Emotion and Sensibility
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    • v.16 no.1
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    • pp.53-64
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    • 2013
  • Folksonomies have potential problems caused by synonyms, tagging level, neologisms and so forth when retrieving music by tags. These problems can be tackled by introducing the mood intensity (Arousal and Valence value) of music as its internal tag. That is, if moods of music pieces and their mood tags are all represented internally by numeric values, A (Arousal) value and V (Valence) value, and they are retrieved by these values, then music pieces having similar mood with the mood tag of a query can be retrieved based on the similarity of their AV values though their tags are not exactly matched with the query. As a prerequisite study, in this paper, we propose the mapping table defining the relation between AV values and folksonomy tags. For analysis of the association between AV values and tags, ANOVA tests are performed on the test data collected from the well known music retrieval site last.fm. The results show that the P values for A values and V values are 0.0, which means the null hypotheses could be rejected and the alternative hypotheses could be adopted. Consequently, it is verified that the distribution of AV values depends on folksonomy tags.

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Variations in species composition of fishes caught by trawl survey in the northwestern East Sea of Russian EEZ and southwestern East Sea of Korean EEZ (러시아측 동해 북서부 해역과 한국측 동해 남서부 해역 트롤 조사에 어획된 어류의 종조성 및 양적변동)

  • SOHN, Myoung Ho;YOON, Sang Chul;LEE, Sung Il;YOON, Byung Sun;CHA, Hyung Kee;KIM, Jong Bin;Kalchugin, Pavel;Solomatov, Sergey
    • Journal of the Korean Society of Fisheries and Ocean Technology
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    • v.51 no.3
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    • pp.355-369
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    • 2015
  • To examine species composition, abundance and biomass of fishes in the northwestern East Sea of Russian EEZ, trawl survey were conducted at 31 sampling stations from 2006 to 2008. Also, trawl survey were conducted at 21 sampling stations in the southwestern East Sea of Korean EEZ from 2006 to 2008. A total of 67 fishes were collected in the northwestern East Sea of Russian EEZ, a total of 39 fishes were collected in the southwestern East Sea of Korean EEZ. Among them, a total of 53 fishes were collected in the northwestern East Sea of Russian EEZ only, and a total of 25 fishes were collected in the southwestern East Sea of Korean EEZ only. Mean abundance per area which caught by trawl survey in the northwestern East Sea ranged from a high of $116,478inds./km^2$ in 2008 to a low of $19,737inds./km^2$ in 2006. And mean abundance per area in the southwestern East Sea ranged from a high of $89,129inds./km^2$ in 2006 to a low of $8,234inds./km^2$ in 2008. Mean biomass per area which caught by trawl survey in the northwestern East Sea ranged from a high of $11,333kg/km^2$ in 2008 to a low of $2,439kg/km^2$ in 2006. And mean biomass per area in the southwestern East Sea ranged from a high of $6,273kg/km^2$ in 2006 to a low of $1,062 kg/km^2$ in 2008. Cluster analysis, based on a Bray-Curtis similarity matrix of fourth root transformed data of number of species and individuals per area, showed division into three different groups by depth in the northwestern and southwestern East Sea.

Video Quality Metric Using One-Dimensional Histograms of Motion Vectors (움직임 벡터의 1차원 히스토그램을 이용한 비디오 화질 평가 척도)

  • Han, Ho-Sung;Kim, Dong-O;Park, Bae-Hong;Sim, Dong-Gyu
    • Journal of the Institute of Electronics Engineers of Korea SP
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    • v.45 no.2
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    • pp.21-28
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    • 2008
  • This paper proposes a novel reduced-reference assessment method for video quality assessment, in which one-dimensional (1-D) histograms of motion vectors (MVs) are used as features of videos. The proposed method is more efficient than the conventional methods in view of computation time, because the proposed quality metric decodes MVs directly from video stream in the parsing process instead of reconstructing the distorted video at the receiver. Moreover, in view of data size, the propose method is efficient because a sender transmits 1-D histograms of MVs accumulated over whole input video sequences. Here, we use 1-D histograms of MVs accumulated over the whole video sequences, which is different from the conventional methods that assessed each image independently. For testing the similarity between histograms, we use histogram intersection and histogram difference methods. We compare the proposed method with the conventional methods for 52 video clips, which are coded under varying bit rate, image size, and frame rate. Experimental results show that the proposed method is more efficient than the conventional methods and that the proposed method is more similar to the mean opinion score (MOS) than conventional algorithms.