• Title/Summary/Keyword: curve expression

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Estimation of Growth Curves and Suitable Slaughter Weight of the Liangshan Pig

  • Luo, Jia;Lei, Huaigang;Shen, Linyuan;Yang, Runlin;Pu, Qiang;Zhu, Kangping;Li, Mingzhou;Tang, Guoqing;Li, Xuewei;Zhang, Shunhua;Zhu, Li
    • Asian-Australasian Journal of Animal Sciences
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    • v.28 no.9
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    • pp.1252-1258
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    • 2015
  • The Liangshan pig is a traditional Chinese small-sized breed; it has a relatively long feeding period and low meat production ability but superior meat quality. This study utilized three non-linear growth models (Von Bertalanffy, Gompertz, and logistic) to fit the growth curve of Liangshan pigs from an unselected, random-bred pig population and estimate the pigs most suitable slaughter weight. The growth development data at 20 time points of 275 Liangshan pigs (from birth to 250 d) were collected. To analyze the relative gene expression related to development, seven slaughter weight phases (50, 58, 66, 74, 82, 90, and 98 kg) (20 pigs per phase) were examined. We found that the Liangshan pig growth curve fit the typical S-curve well and that their growth turning point was 193.4 days at a weight of 62.5 kg, according to the best fit Von Bertalanffy model based on the goodness of fit criteria. Furthermore, we estimated that the most suitable slaughter weight was 62.5 to 74.9 kg based on the growth curve and the relative expression levels of growth-related genes.

Large Eddy Simulation of the Dynamic Response of an Inducer to Flow Rate Fluctuations

  • Kang, Dong-Hyuk;Yonezawa, Koichi;Ueda, Tatsuya;Yamanishi, Nobuhiro;Kato, Chisachi;Tsujimoto, Yoshinobu
    • International Journal of Fluid Machinery and Systems
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    • v.2 no.4
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    • pp.431-438
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    • 2009
  • A Large Eddy Simulation (LES) of the flow in an inducer is carried out under flow rate oscillations. The present study focuses on the dynamic response of the backflow and the unsteady pressure performance to the flow rate fluctuations under non-cavitation conditions. The amplitude of angular momentum fluctuation evaluated by LES is larger than that evaluated by RANS. However, the phase delay of backflow is nearly the same as RANS calculation. The pressure performance curve exhibits a closed curve caused by the inertia effect associated with the flow rate fluctuations. Compared with simplified one dimensional evaluation of the inertia component, the component obtained by LES is smaller. The negative slope of averaged performance curve becomes larger under unsteady conditions. From the conservations of angular momentum and energy, an expression useful for the evaluation of unsteady pressure rise was obtained. The examination of each term of this expression show that the apparent decrease of inertia effects is caused by the response delay of Euler's head and that the increase of negative slope is caused by the delay of inertial term associated with the delay of backflow response. These results are qualitatively confirmed by experiments.

Expression of HERC4 in Lung Cancer and its Correlation with Clinicopathological Parameters

  • Zeng, Wen-Li;Chen, Yao-Wu;Zhou, Hui;Zhou, Jue-Yu;Wei, Min;Shi, Rong
    • Asian Pacific Journal of Cancer Prevention
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    • v.16 no.2
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    • pp.513-517
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    • 2015
  • Background: Growing evidence suggests that the members of the ubiquitin-proteasome system (UPS) are important for tumorigenesis. HERC4, one component, is a recently identified ubiqutin ligase. However, the expression level and function role of HERC4 in lung cancer remain unknown. Our objective was to investigate any correlation between HERC4 and development of lung cancer and its clinical significance. Materials and Methods: To determine HERC4 expression in lung cancer, an immunohistochemistry analysis of a tissue microarray containing samples of 10 lung normal tissues, 15 pulmonary neuroendocrine carcinomas, 45 squamous epithelial cancers and 50 adenocarcinomas was conducted. Receiver operating characteristic (ROC) curve analysis was applied to obtain a cut-off point of 52.5%, above which the expression of HERC4 was regarded as "positive". Results: On the basis of ROC curve analysis, positive expression of HERC4 was detected in 0/10 (0.0%) of lung normal tissues, in 4/15 (26.7%) of pulmonary neuroendocrine carcinomas, in 13/45 (28.9%) of squamous epithelial cancers and in 19/50 (38.0%) of adenocarcinomas. It showed that lung tumors expressed more HERC4 protein than adjacent normal tissues (${\chi}^2$=4.675, p=0.031). Furthermore, HERC4 positive expression had positive correlation with pT status (${\chi}^2$=44.894, p=0.000), pN status (${\chi}^2$=43.628, p=0.000), histological grade (${\chi}^2$=7.083, p=0.029) and clinical stage (${\chi}^2$=72.484, p=0.000), but not age (${\chi}^2$=0.910, p=0.340). Conclusions: Our analysis suggested that HERC4 is likely to be a diagnostic biomarker for lung cancer.

Polymorphisms and expression levels of TNP2, SYCP3, and AZFa genes in patients with azoospermia

  • Mohammad Ismael Ibrahim Jebur;Narges Dastmalchi;Parisa Banamolaei;Reza Safaralizadeh
    • Clinical and Experimental Reproductive Medicine
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    • v.50 no.4
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    • pp.253-261
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    • 2023
  • Objective: Azoospermia (the total absence of sperm in the ejaculate) affects approximately 10% of infertile males. Despite diagnostic advances, azoospermia remains the most challenging issue associated with infertility treatment. Our study evaluated transition nuclear protein 2 (TNP2) and synaptonemal complex protein 3 (SYCP3) polymorphisms, azoospermia factor a (AZFa) microdeletion, and gene expression levels in 100 patients with azoospermia. Methods: We investigated a TNP2 single-nucleotide polymorphism through polymerase chain reaction (PCR) restriction fragment length polymorphism analysis using a particular endonuclease. An allele-specific PCR assay for SYCP3 was performed utilizing two forward primers and a common reverse primer in two PCR reactions. Based on the European Academy of Andrology guidelines, AZFa microdeletions were evaluated by multiplex PCR. TNP2, SYCP3, and the AZFa region main gene (DEAD-box helicase 3 and Y-linked [DDX3Y]) expression levels were assessed via quantitative PCR, and receiver operating characteristic curve analysis was used to determine the diagnostic capability of these genes. Results: The TNP2 genotyping and allelic frequency in infertile males did not differ significantly from fertile volunteers. In participants with azoospermia, the allelic frequency of the SYCP3 mutant allele (C allele) was significantly altered. Deletion of sY84 and sY86 was discovered in patients with azoospermia and oligozoospermia. Moreover, SYCP3 and DDX3Y showed decreased expression levels in the azoospermia group, and they exhibited potential as biomarkers for diagnosing azoospermia (area under the curve, 0.722 and 0.720, respectively). Conclusion: These results suggest that reduced SYCP3 and DDX3Y mRNA expression profiles in testicular tissue are associated with a higher likelihood of retrieving spermatozoa in individuals with azoospermia. The homozygous genotype TT of the SYCP3 polymorphism was significantly associated with azoospermia.

Development of Curve Fitted Equations for Seismic Performance Evaluation of Various Buried Pipelines (각종 매설관의 내진성능평가를 위한 곡선적합식의 개발)

  • Jeong, Jin-Ho;Park, Byung-Ho;Kim, Sung-Ban
    • Proceedings of the Korean Geotechical Society Conference
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    • 2006.03a
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    • pp.1326-1333
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    • 2006
  • Purpose of this research is a development for the curve fitted equations that can improve practical calculation and work application when seismic performance has been evaluated and this work has been made a study of the dynamic response under various boundary conditions of buried pipelines to compare the dynamic behavior of concrete pipe and steel pipe, FRP pipe. This research have been developed curve fitted equations that can be improving efficiency and practicality. Using a nonlinear least square method, and after testing several different exponential equations, Proposed the curve fitted equations to give the best result and constant value by the propagation velocities. With these results, dynamic response analysis and seismic performance evaluation have been achieved on concrete pipe, steel pipe and FRP pipe that have a various boundary conditions. Degree of a polynomial expression and coefficient value by propagation velocity have been calculated when using the curve fitting equations.

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Dynamical Stability Curve of the Ship on Polar Coordinates and Stability Indicator. (동적(動的) 복원정(復原挺) 곡선(曲線)의 작도법(作圖法)과 그 응용(應用)에 관(關)하여)

  • Jin-Ahn,Kim
    • Bulletin of the Society of Naval Architects of Korea
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    • v.2 no.1
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    • pp.15-19
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    • 1965
  • The stability curves are very important data to decide the seaworthiness of all kinds of ships among waves. Both statical and dynamical stability curves on a rectangular coordinate system have broadly been handled at ship yards or at the government concerned, up to data. As concerns a method of obtaining a statical stability curve on polar coordinate system, the papers were presented once. Also, it is of use to research the dynamical stability curve on polar coordinate system. Author treated of the dynamical stability curve by four different methods, and tried to set the stability indicator inboard, adopted those proposals, in order to give some aids for good navigation on the sea. Fig. 1. shows a drawing method in case of the position of centre of buoyancy can be previously pointed out on the line corresponding to its inclination. Fig. 2. shows a method used a statical stability curve on polar coordinate. Fig. 3. shows a method obtained by the most simplified means. Fig. 4. shows dynamical stability curve made by geometrical expression method, instead of dynamical lever. A simple stability indicator which was mechanized above characteristics is attempted by author as shown Fig. 5 and Fig.6. It is demanded at hand, for more advanced improvement of such indicator.

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COX-2 INHIBITOR INDUCED APOPTOSIS IN ORAL SQUAMOUS CELL CARCINOMA CELL LINE THROUGH AKT PATHWAY (COX-2 억제제에 의한 AKT 경로를 통한 구강편평세포암종 세포주의 세포사멸 유도)

  • Seo, Young-Ho;Han, Se-Jin;Lee, Jae-Hoon
    • Maxillofacial Plastic and Reconstructive Surgery
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    • v.30 no.1
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    • pp.30-40
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    • 2008
  • The objectives of this study was to check up the effect of celecoxib, COX-2 inhibitor, on the pathogenesis of oral squamous cell carcinoma. After mefenamic acid, aspirin and celecoxib, COX-2 inhibitor, were inoculated to HN 22 cell line, the following results were obtained through tumor cell viability by wortmannin, growth curve of tumor cell line, apoptotic index, PGE2 synthesis, total RNA extraction, RT-PCR analysis and TEM features. 1. When wortmannin and celecoxib were given together, the survival rate of tumor cells was lowest about 47 %. So wortmannin had an effect on the decrease of survival rate of tumor cells. 2. In growth curve, the slowest growth was observed in celecoxib inoculated group. 3. The synthesis of PGE2 was decreased in all group and the obvious suppression and highest apoptotic index was observed in celecoxib inoculated group. 4. Suppression of expression of COX-2 mRNA was evident in celecoxib inoculated group. But that of COX-1,2 mRNA was observed in mefenamic acid inoculated group and aspirin inoculated group. 5. In celecoxib inoculated group, mRNA expression of AKT1 was decreased and that of PTEN & expression of caspase 3 and 9 was evidently increased. Depending on above results, when celecoxib was inoculated to oral squamous cell carcinoma cell line, an increase of mRNA expression of caspase 3,9 and PTEN is related to a decrease of mRNA expression of AKT1. Wortmannin had an effect on the decrease of survival rate of tumor cells. Celecoxib might induce apoptosis of tumor cell by suppression of AKT1 pathway and COX-2 inhibition. This results suggested that COX-2 inhibitor might be significantly effective in chemoprevention of oral squamous cell carcinoma.

Comparative Expression of Stress Related Genes in Response to Salt-stressed Aspen by Real-time RT-PCR

  • Ku, Ja-Jung;Kim, Yong-Yul
    • Korean Journal of Plant Resources
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    • v.21 no.3
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    • pp.210-215
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    • 2008
  • Gene-expression analysis is increasingly important in biological research, with real-time reverse PCR (RTPCR) becoming the method of choice for high-throughput and accurate expression profiling of selected genes. However, this technique requires important preliminary work for standardizing and optimizing the many parameters involved in the analysis. Plant stress studies are more and more based on gene expression. The analysis of gene expression requires sensitive and reproducible measurements for specific mRNA sequence. Several genes are regulated in response to abitoic stresses, such as salinity, and their gene products function in stress response and tolerance. The design of the primers and TaqMan probes for real-time PCR assays were carried out using the Primer $Express^{TM}$ software 3.0. The PCR efficiency was estimated through the linear regression of the dilution curve. To understand the expression pattern of various genes under salt stressed condition, we have developed a unique public resource of 9 stress-related genes in poplar. In this study, real-time RT-PCR was used to quantify the transcript level of 10 genes (9 stress-related genes and 1 house keeping gene) that could play a role in adaptation of Populus davidiana. Real-time RT-PCR analyses exhibited different expression ratios of related genes. The data obtained showed that determination of mRNA levels could constitute a new approach to study the stress response of P. davidiana after adaptation during growth in salinity condition.

IMPLICITIZATION OF RATIONAL CURVES AND POLYNOMIAL SURFACES

  • Yu, Jian-Ping;Sun, Yong-Li
    • Bulletin of the Korean Mathematical Society
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    • v.44 no.1
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    • pp.13-29
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    • 2007
  • In this paper, we first present a method for finding the implicit equation of the curve given by rational parametric equations. The method is based on the computation of $Gr\"{o}bner$ bases. Then, another method for implicitization of curve and surface is given. In the case of rational curves, the method proceeds via giving the implicit polynomial f with indeterminate coefficients, substituting the rational expressions for the given curve and surface into the implicit polynomial to yield a rational expression $\frac{g}{h}$ in the parameters. Equating coefficients of g in terms of parameters to 0 to get a system of linear equations in the indeterminate coefficients of polynomial f, and finally solving the linear system, we get all the coefficients of f, and thus we obtain the corresponding implicit equation. In the case of polynomial surfaces, we can similarly as in the case of rational curves obtain its implicit equation. This method is based on characteristic set theory. Some examples will show that our methods are efficient.

Fake News Detection on Social Media using Video Information: Focused on YouTube (영상정보를 활용한 소셜 미디어상에서의 가짜 뉴스 탐지: 유튜브를 중심으로)

  • Chang, Yoon Ho;Choi, Byoung Gu
    • The Journal of Information Systems
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    • v.32 no.2
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    • pp.87-108
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    • 2023
  • Purpose The main purpose of this study is to improve fake news detection performance by using video information to overcome the limitations of extant text- and image-oriented studies that do not reflect the latest news consumption trend. Design/methodology/approach This study collected video clips and related information including news scripts, speakers' facial expression, and video metadata from YouTube to develop fake news detection model. Based on the collected data, seven combinations of related information (i.e. scripts, video metadata, facial expression, scripts and video metadata, scripts and facial expression, and scripts, video metadata, and facial expression) were used as an input for taining and evaluation. The input data was analyzed using six models such as support vector machine and deep neural network. The area under the curve(AUC) was used to evaluate the performance of classification model. Findings The results showed that the ACU and accuracy values of three features combination (scripts, video metadata, and facial expression) were the highest in logistic regression, naïve bayes, and deep neural network models. This result implied that the fake news detection could be improved by using video information(video metadata and facial expression). Sample size of this study was relatively small. The generalizablity of the results would be enhanced with a larger sample size.