• 제목/요약/키워드: core collection

검색결과 326건 처리시간 0.033초

Construction of core collection based on single nucleotide polymorphism analysis in soybean germplasm

  • Jeong, Namhee;Park, Soo-Kwon;Lee, Choonseok;Ok, Hyun-Choong;Kim, Dool-Yi;Kim, Jae-Hyun;Park, Ki-Do;Moon, Jung-Kyung;Kim, Namshin;Choi, Man Soo
    • 한국작물학회:학술대회논문집
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    • 한국작물학회 2017년도 9th Asian Crop Science Association conference
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    • pp.106-106
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    • 2017
  • The soybean [Glycine max (L.) Merr.] is one of the most important crop resources worldwide as food and forage. It is also important and valuable that to hold crop resources to have high genetic diversities. Recently, a core collection has been constructed in many plants to preserve the genetic resources of various plants. A core collection is small population to represent the genetic diversity of the total collection, and is of strategic importance as they allow the use of a small part of a germplasm collection that is representative of the total collection. Here, we developed the core collection consisting of 816 accessions by using approximately 180,000 (180K) single nucleotide polymorphisms (SNPs) developed in previous study. In addition, we performed genetic diversity and population structure analysis to construct the core collection from entire 4,392 collections. there were excluded sample call rates less than 93% and duplicated samples more than 99.9% according to genotype analysis using 180K SNPs from entire collections. Furthermore, we were also excluded natural hybrid resources which Glycine max and Glycine soja are mixed in half through population structure analysis. As a result, we are constructed the core collection of genetic diversity that reflects 99% of the entire collections, including 430 cultivated soybeans (Glycine max) and 386 wild soybeans (Glycine soja). The core collection developed in this study should be to provide useful materials for both soybean breeding programs and genome-wide association studies.

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Analysis of genetic diversity of cowpea landraces from Korea determined by Simple Sequence Repeats and establishment of a core collection

  • Lee, Jeongran;Baek, Hyung-Jin;Yoon, Mun-Sup;Park, Sang-Koo;Cho, Yang-Hee;Kim, Chang-Yung
    • 한국육종학회지
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    • 제41권4호
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    • pp.369-376
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    • 2009
  • Cowpea might have been introduced from China to Korea and cultivated for several hundred years but it has never been a staple food crop in Korea. In this study, genetic diversity of 492 Korean cowpea landrace accessions that have passport information was estimated using six SSR markers. The mean of Weir's gene diversity was 0.665 from all accessions investigated in the study. Cowpea gene diversity of six local provinces in Korea was ranged from 0.370 in accessions of Gangwon to 0.680 in Jeonra provinces. Low gene diversity of the cowpea genepool of Gangwon province was probably derived from relatively few introductions. Especially SSR markers VM36 and VM39 seem to be good markers to distinguish the Gangwon accessions from others by occurring at a specific locus with higher than 78% of allele frequency. Except for the Gangwon province with the low genetic diversity, gene diversity of cowpea accessions from other provinces was ranged from 0.600 to 0.680 indicating no big differences among provinces. Distribution pattern of the allele frequencies was similar among the other provinces. This may reveal that Korean farmers might exchange cowpea seeds easily with even their neighbors with geographical barriers. A core collection, 100 landraces, ca. 20% of base collection, was developed at the 70% of a similarity coefficient level using random sampling approaches after stratification of the entire landrace collection based on the phenetic dendrogram. The variability of SSR in the base and core collections of Korean cowpea landrace was compared by calculating Weir's gene diversity. The mean of Weir's gene diversity of the core was 0.707 while that of the base collection was 0.665. The higher diversity index in the core collection indicates that it maintains the initial variability and well represents the base collection. The core collection included one of determinate accession (IT 216155) and two of no branching type accessions (IT 103959 and IT 161024). The core collection could be used to guide more efficient management and utilization of the entire collection. This core collection should be revised periodically as additional accessions are collected and further characterization is conducted.

대학도서관 단행본 대출이력통계를 통한 집중장서에 관한 연구 (A Study on Core Collection through Circulation Statistics of Books in an Academic Library)

  • 양지안;남영준
    • 한국문헌정보학회지
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    • 제50권3호
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    • pp.429-453
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    • 2016
  • 이 연구는 대학도서관의 단행본 대출패턴을 대출건수 및 Bonn 이용계수 측면에서 주제별, 신분별, 계열별로 분석하였다. 이 연구에서는 대출건수의 과반 이상을 차지하는 도서를 '집중장서'라 정의하였으며, 전체 대출건수의 50%를 대출도서의 20%인 집중장서가 차지한다는 '대출도서 20/50 법칙'을 제안하였다. 각 주제별 대출건수 중 집중장서가 차지하는 비중을 이용계수를 이용하여 분석하였고, 월별 대출패턴과 대출기간도 분석하였다. 또한 대출횟수와 대출기간을 함께 고려한 '장서활용량'을 정의하고, 집중장서의 대출패턴을 대출횟수와 장서활용량 측면에서 비교분석하였다. 집중장서의 경우 총 대출건수와 총 장서활용량의 약 50%를 차지함을 알 수 있었고 모두 멱함수 분포도를 나타냄을 확인하였다.

Development and Evaluation of Core Collection Using Qualitative and Quantitative Trait Descriptor in Sesame (Sesamum indicum L.) Germplasm

  • Park, Jong-Hyun;Suresh, Sundan;Raveendar, Sebastin;Baek, Hyung-Jin;Kim, Chung-Kon;Lee, Sokyoung;Cho, Gyu-Taek;Ma, Kyung-Ho;Lee, Chul-Won;Chung, Jong-Wook
    • 한국작물학회지
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    • 제60권1호
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    • pp.75-84
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    • 2015
  • Sesame (Sesamum indicum L.) is one of the most important oilseed crops with high oil contents and rich nutrient value. The development of a core collection could facilitate easier access to sesame genetic resources for their use in crop improvement programs and simplify the genebank management. The present study was initiated to the development and evaluation of a core collection of sesame based on 5 qualitative and 10 quantitative trait descriptors on 2,751 sesame accessions. The accessions were different countries of origin. About 10.1 percent of accessions were selected by using the power core program to constitute a core collection consisting of 278 accessions. Mean comparisons using t-test, Nei's diversity index of 10 morphological descriptors and correlation coefficients among traits indicated that the existing genetic variation for these traits in the entire collection has been preserved in the core collection. The results from this study will provide effective information for future germplasm conservation and improvement programs in sesame.

Establishing a Core Collection of Proso Millet (Panicum miliaceum) Germplasm

  • Myung Chul Lee;Yu-Mi Choi;Myoung-Jae Shin;Hyemyeong Yoon;Kebede Taye Desta
    • 한국자원식물학회:학술대회논문집
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    • 한국자원식물학회 2020년도 춘계학술대회
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    • pp.47-47
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    • 2020
  • The Korean National Agrobiodiversity Center holds the more than 1300 accessions of proso millet, but a large portion of accessions are landrace of Korea that has very similar traits. To comprehend the maximum genetic diversity of this crop, a core collection with minimum number of accessions will facilitate easy access to genetic material. Here we assessed the genetic diversity and population structure in a germplasm collection of 830 accessions by employing EST-SSR markers and morphological traits. A total of 107 alleles were detected with an average allele number of 4.9 per locus among the 830 accessions based on 37 EST-SSR markers. The number of alleles per locus ranged from 2 to 7. Polymorphism information content and expected heterozygosity ranged from 0.06 to 0.68 (mean = 0.21) and 0.06 to 0.73 (mean = 0.23), respectively. The germplasm collection was separated into two groups based on population structure analysis, whereas principal coordinate analysis (PCoA) could not cluster accessions according to their geographic origin. Subsequently, a preliminarily developed core collection with a total of 141 accessions (17%) was selected from the whole set of germplasm by combining allelic variations of EST-SSR markers and eight different phenotypic traits. The core collection optimally represented the whole germplasm collection and displayed a similar level of PCoA value and genetic variation from the initial collection. The results obtained here provide a primary resource for further genetic analysis and establish a reference for further development of appropriate genetic breeding strategies.

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Identification of SNPs Related to 19 Phenotypic Traits Using Genome-wide Association Study (GWAS) Approach in Korean Wheat Mini-core Collection

  • Yuna Kang;Yeonjun Sung;Seonghyeon Kim;Changsoo Kim
    • 한국작물학회:학술대회논문집
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    • 한국작물학회 2020년도 춘계학술대회
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    • pp.120-120
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    • 2020
  • Based on the simple sequence repeat (SSR) marker, a Korean wheat core collection were established with 616 wheat accessions. Among them, the SNP genotyping for the entire genome was performed using DNA chip array to clarify the whole genome SNP profiles. Consequently, a total of 35,143 SNPs were found and we re-established a mini-core collection with 247 accessions. Population diversity and phylogenetic analysis revealed genetic diversity and relationships from the mini core set. In addition, genome-wide association study (GWAS) was performed on 19 phenotypic traits; ear type, awn length, culm length, ear length, awn color, seed coat color, culm color, ear color, loading, leaf length, leaf width, seeding stand, cold damage, weight, auricle, plant type, heading stage, maturation period, upright habit, and degree of flag leaf. The GWAS was performed using the fixed and random model circulating probability unification (FarmCPU), which identified 14 to 258 SNP loci related to 19 phenotypic traits. Our study indicates that this Korean wheat mini-core collection is a set of germplasm useful for basic and applied research with the aim of understanding and exploiting the genetic diversity of Korean wheat varieties.

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공공도서관 장서평가를 위한 소장도서 이용도 및 핵심장서 분석에 관한 연구 - 광진정보도서관 사례를 중심으로 - (A Study on the Analysis of Rate of Use and Core Collection for Collection Evaluation in Public Libraries: in the Case of Gwangjin District Public Library)

  • 오지은;정동열
    • 한국문헌정보학회지
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    • 제49권1호
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    • pp.201-221
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    • 2015
  • 본 연구는 국내 공공도서관의 장서개발정책을 위하여 장서평가 방법을 실증적 데이터에 적용함으로서 그 활용 가능성을 제시하는데 목적이 있다. 이러한 목적을 위하여 서울시 광진정보도서관의 최근 10년간 장서대출 데이터를 활용하여 도서관 장서평가 방법 중에서 가장 신뢰성이 높은 Bonn의 이용계수, 소장도서 장서회전율과 Trueswell의 80/20 법칙을 적용하였다. 분석내용은 소장도서의 전체적 분석과 주제별 분석으로 장서평가에 대한 실질적인 가치와 의미를 부여하도록 하였다. 주요 분석항목으로는 연도별로 소장도서 전체 및 주제별 이용도 분석과 연도별로 대출 핵심장서의 비중 분석으로 구성되어 있다. 분석 결과, 장서 전체 이용도와 주제별 이용도의 변화를 분석함으로써 도서관에서 수행된 업무와 이용도 간의 관련성을 파악할 수 있으며, 장서대출 데이터 분석으로 이용자들의 장서 이용패턴에 대한 변화와 도서관 프로그램에 대한 지역주민의 평가를 파악할 수 있다. 아울러 대출도서 핵심장서의 비중 분석을 통하여 효과적인 수서정책을 위한 근거자료를 제시할 수 있다.

구조체 콘크리트에 접합분리 시험체의 적용을 위한 강도비교에 관한 실험적 연구 (Studies on the Evaluation Method of Strength Comparison for Application in Joint Separation Test Body to Structural Concrete)

  • 김성덕;이선호;정광식;백민수;이영도;정상진
    • 한국건축시공학회:학술대회논문집
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    • 한국건축시공학회 2008년도 춘계 학술논문 발표대회
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    • pp.79-82
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    • 2008
  • It has been reported that destruction test by core collection is the most reliable of the structural concrete strength in present building construction field. But it causes low efficiency by damage and cutting in structure due to the core collection. It also has some problems in repairing. Additionally in case of strength test with management specimen, different environment compared to the structure environment cause problems about estimation precise structure strength. Therefore, it is required to develop structure direct strength test that has test values and credibility above the ones obtained by core specimen collection strength test and seasonal specimen test to suggest a reasonable and practical management method of structural concrete.

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대학도서관 대출데이터분석을 통한 장서 이용행태 및 특성에 관한 연구 (A Study on Use Behaviors of Books through Circulation Data Analysis in an Academic Library)

  • 양지안
    • 한국도서관정보학회지
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    • 제48권2호
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    • pp.263-293
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    • 2017
  • 이 연구는 대학도서관 대출데이터를 활용하여 이용자들의 대출행태를 장서의 대출수명과 주제영역, 특정 이용자층과의 연관성 등의 다양한 관점에서 분석하였다. K대학도서관의 2006년부터 2015년까지 10년간 이용자들의 연도별 대출행태는 매해 20%의 대출도서가 전체 대출의 50%를 차지한다는 '대출도서 20/50 법칙'을 따르는 것으로 확인하였다. 또한 각 대출도서의 도서연령과 대출횟수의 연령별 누적분포를 구하여 도서 반감기를 정의하고 이를 수식화하였다. 종단적 관점에서의 핵심장서를 산출하여 그 특성을 주제별, 구성원별, 계열별, 연도별 등의 측면에서 분석하였다. 종단적 관점의 전체 대출도서와 핵심장서의 대출패턴은 모든 측면에서 매우 상이하게 분석되어 10년 동안 꾸준히 핵심장서로 분류되는 도서들의 역할이 있는 것으로 나타났다. 이는 10년간 꾸준히 대출되는 도서, 즉 핵심장서의 특성이 명확하다는 의미이며, 이러한 특성을 반영한 효율적인 장서구성정책을 개발할 필요성이 있다는 근거가 된다.

Development of Ground Control Point Collection and Management System based on High resolution Satellite Images

  • Kim, Kwang-Yong;Yoon, Chang-Rak;Kim, Kyung-Ok
    • 대한원격탐사학회:학술대회논문집
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    • 대한원격탐사학회 2003년도 Proceedings of ACRS 2003 ISRS
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    • pp.343-345
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    • 2003
  • This paper describes the system development for the Ground Control Point collection and management through the major coastline region in KOREA, which will collect and manage the ground control point based on high resolution satellite image database. The module of this system is following 1) GCP/Coarstline research plan module 2) GCP/Coarstline ground collection module 3) GCP/Coarstline post processing module Our team developed the core components of ‘High Resolution Satellite Image Processing Technique’ project, and this system, among applications of our project, is constructed to apply to practical use. In this application, you will also see how to apply core components of our project.

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