• Title/Summary/Keyword: complementation

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Cloning and Nucleotide Sequence Analysis of the rpoH Gene from Methylovorus sp. Strain SS1 DSM11726 (Methylovorus sp. Strain SS1 DSM11726으로부터 rpoH 유전자의 클로닝과 염기서열 분석)

  • Eom, Chi-Yong;Song, Seung-Eun;Park, Mi-Hwa;Kim, Young-Min
    • Microbiology and Biotechnology Letters
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    • v.35 no.3
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    • pp.177-183
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    • 2007
  • Using complementation of RpoH deficient E. coli strain A7448, the rpoH gene encoding heat shock sigma factor 32 (${\sigma}^{32}$) from Methylovorus sp. strain SS1 DSM11726 was cloned and sequenced. Sequence analysis of a stretch of 1,796-bp revealed existence of an open reading frame encoding a polypeptide of 284 amino acid (32,006 dalton). Deduced amino acid sequence of the Methylovorus sp. strain SS1 RpoH showed that 59.6%, 39.1% and 51.4% identities with those of Nitrosomonas europaea (${\beta}$-proteobacteria), Agrobacterium tumefaciens ($\alpha$-proteobacteria) and E. coli (${\gamma}$-proteobacteria). The expression level of the functional ortholog of RpoH of Methylovorus sp. strain SS1 was increased transiently after heat induction, further indicating that it functions as a heat shock sigma factor.

Cell Death Mediated by Vibrio parahaemolyticus Type III Secretion System 1 Is Dependent on ERK1/2 MAPK, but Independent of Caspases

  • Yang, Yu-Jin;Lee, Na-Kyung;Lee, Na-Yeon;Lee, Jong-Woong;Park, Soon-Jung
    • Journal of Microbiology and Biotechnology
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    • v.21 no.9
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    • pp.903-913
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    • 2011
  • Vibrio parahaemolyticus, which causes gastroenteritis, wound infection, and septicemia, has two sets of type III secretion systems (TTSS), TTSS1 and TTSS2. A TTSS1-deficient vcrD1 mutant of V. parahaemolyticus showed an attenuated cytotoxicity against HEp-2 cells, and a significant reduction in mouse lethality, which were both restored by complementation with the intact vcrD1 gene. V. parahaemolyticus also triggered phosphorylation of mitogen-activated protein kinases (MAPKs) including p38 and ERK1/2 in HEp-2 cells. The ability to activate p38 and ERK1/2 was significantly affected in a TTSS1-deficient vcrD1 mutant. Experiments using MAPK inhibitors showed that p38 and ERK1/2 MAPKs are involved in V. parahaemolyticus-induced death of HEp-2 cells. In addition, caspase-3 and caspase-9 were processed into active forms in V. parahaemolyticus-exposed HEp-2 cells, but activation of caspases was not essential for V. parahaemolyticus-induced death of HEp-2 cells, as shown by both annexin V staining and lactate dehydrogenase release assays. We conclude that secreted protein(s) of TTSS1 play an important role in activation of p38 and ERK1/2 in HEp-2 cells that eventually leads to cell death via a caspase-independent mechanism.

Molecular Characterization of Adenylyl Cyclase Complex Proteins Using Versatile Protein-Tagging Plasmid Systems in Cryptococcus neoformans

  • So, Yee-Seul;Yang, Dong-Hoon;Jung, Kwang-Woo;Huh, Won-Ki;Bahn, Yong-Sun
    • Journal of Microbiology and Biotechnology
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    • v.27 no.2
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    • pp.357-364
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    • 2017
  • In this study, we aimed to generate a series of versatile tagging plasmids that can be used in diverse molecular biological studies of the fungal pathogen Cryptococcus neoformans. We constructed 12 plasmids that can be used to tag a protein of interest with a GFP, mCherry, $4{\times}FLAG$, or $6{\times}HA$, along with nourseothricin-, neomycin-, or hygromycin-resistant selection markers. Using this tagging plasmid set, we explored the adenylyl cyclase complex (ACC), consisting of adenylyl cyclase (Cac1) and its associated protein Aca1, in the cAMP-signaling pathway, which is critical for the pathogenicity of C. neoformans. We found that Cac1-mCherry and Aca1-GFP were mainly colocalized as punctate forms in the cell membrane and non-nuclear cellular organelles. We also demonstrated that Cac1 and Aca1 interacted in vivo by co-immunoprecipitation, using $Cac1-6{\times}HA$ and $Aca1-4{\times}FLAG$ tagging strains. Bimolecular fluorescence complementation further confirmed the in vivo interaction of Cac1 and Aca1 in live cells. Finally, protein pull-down experiments using $aca1{\Delta}$::ACA1-GFP and $aca1{\Delta}$::ACA1-GFP $cac1{\Delta}$ strains and comparative mass spectrometry analysis identified Cac1 and a number of other novel ACC-interacting proteins. Thus, this versatile tagging plasmid system will facilitate diverse mechanistic studies in C. neoformans and further our understanding of its biology.

Oxidative Damage of DNA Induced by Ferritin and Hydrogen Peroxide

  • Kang, Jung-Hoon
    • Bulletin of the Korean Chemical Society
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    • v.31 no.10
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    • pp.2873-2876
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    • 2010
  • Excess free iron generates oxidative stress that may contribute to the pathogenesis of various causes of neurodegenerative diseases. Previous studies have shown that one of the primary causes of increased brain iron may be the release of excess iron from intracellular iron storage molecules. In this study, we attempted to characterize the oxidative damage of DNA induced by the reaction of ferritin with $H_2O_2$. When DNA was incubated with ferritin and $H_2O_2$, DNA strand breakage increased in a time-dependent manner. Hydroxyl radical scavengers strongly inhibited the ferritin/$H_2O_2$ system-induced DNA cleavage. We investigated the generation of hydroxyl radical in the reaction of ferritin with $H_2O_2$ using a chromogen, 2,2'-azinobis-(2-ethylbenzthiazoline-6-sulfonate) (ABTS), which reacted with ${\cdot}OH$ to form $ABTS^{+\cdot}$. The initial rate of $ABTS^{+\cdot}$ formation increased as a function of incubation time. These results suggest that DNA strand breakage is mediated in the reaction of ferritin with $H_2O_2$ via the generation of hydroxyl radicals. The iron-specific chelator, deferoxamine, also inhibited DNA cleavage. Spectrophotometric study using a color reagent showed that the release of iron from $H_2O_2$-treated ferritin increased in a time-dependent manner. Ferritin enhanced mutation of the lacZ' gene in the presence of $H_2O_2$ when measured as a loss of $\alpha$-complementation. These results indicate that ferritin/$H_2O_2$ system-mediated DNA cleavage and mutation may be attributable to hydroxyl radical generation via a Fenton-like reaction of free iron ions released from oxidatively damaged ferritin.

A Preliminary Study on the Characteristics and Criteria of New Material for the Possibility of Application in Housing Space (주거공간에 적용 가능한 신소재 특성 및 기준에 관한 기초 연구)

  • Jung, Sun-Hee;Seo, Ji-Eun
    • Journal of the Korean housing association
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    • v.21 no.4
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    • pp.71-79
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    • 2010
  • This study is a fundamental research which suggests some standards that can be used in selecting some advanced materials to be applied in housing space designs. The following conclusions have been drawn from the study. First, it has been discovered that as the residents' quality of life improved, the finishing materials emerged as an important element of housing spaces. It could also be seen that among the finishing materials used in housing spaces, there is recently a growing trend towards various environmentally-friendly advanced materials under the theme of 'the nature' and 'health'. As a result, the need to investigate the standards of discriminatory and efficient housing space designs using advanced materials is on the increase. Second, through the literature and precedent studies, the physical criteria of advanced materials have been classified into five categories: new technology, new manufacturing methods, new materials, complementation and applicability. The main criteria of advanced finishing materials for housing spaces have been classified into four main categories: durability, functionality, economical efficiency and sensibility. By collecting and classifying some key words according to each of these four categories, the representative or combinable features have been extracted. By organizing the advanced materials' physical criteria and their details, some standards based on the physical aspects have been suggested. The features of the finishing materials in consideration of advanced materials have been reclassified into the user-based criteria, environmental criteria and spatial criteria. Through this method, the criteria have been brought up from a new viewpoint, establishing the standards for the advanced materials applicable to housing spaces. Finally, after assessing the criteria by analyzing the advanced materials currently known to be applicable in housing spaces, it has been concluded that the criteria can be used as the fundamental standards. As this study is based on investigating the literature and data, it may be less than reasonable to generalize from the limited number of examples. Hence, it shall be important to make a profound study of some detailed criteria by suggesting more objective standards and analyzing a greater variety of advanced materials.

A Study on Corset Look Pattern - Focused on Women in Their 20s with Standard Body Type - (코르셋 룩 원명에 관한 연구 - 20대 전기 표준체형 여성을 중심으로 -)

  • Kim, Si-Man;Sung, Ok-Jin
    • Journal of the Korean Society of Costume
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    • v.57 no.8
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    • pp.48-59
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    • 2007
  • The purpose of this research is to develop a basic pattern of corset look taking into consideration characteristics of human body and fit, by transforming 3 dimensional information obtained from draping of standard body type of women in their 20s, which constitute the biggest consumer group of corset look in Korea, on the basis of body shape of women best reflecting 3 dimensional characteristics. In order to develop a corset look pattern suitable for standard body type of women in their 20s, wear tests of A, B, and C types of patterns in terms of the bust in the standard body type that bust circumference 86.7cm and chest circumference 87.0cm were evaluated best. Taking into consideration above findings, fer the purpose of developing a corset look pattern having an excellent fit and reflecting characteristics of Korean women in their 20s with standard body type, a corset look pattern was designed with proper ease calculated by draping incorporated, and through alteration and complementation of such a pattern, a study pattern was produced. This study is expected to provide tips for standard body type women in their 20s with smaller bust circumference to choose clothing allowing for a better fit able to make up for weakness of their body, while presenting to clothing makers ways of designing and size-setting in terms of characteristics of body type of these consumers.

Deletion of GBG1/AYR1 Alters Cell Wall Biogenesis in Saccharomyces cerevisiae

  • Ahn, Ki-Woong;Kim, Sung-Woo;Kang, Hyung-Gyoo;Kim, Ki-Hyun;Park, Yun-Hee;Choi, Won-Ja;Park, Hee-Moon
    • Mycobiology
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    • v.38 no.2
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    • pp.102-107
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    • 2010
  • We identified a gene for $\beta$-1,3-glucan synthesis (GBG1), a nonessential gene whose disruption alters cell wall synthesis enzyme activities and cell wall composition. This gene was cloned by functional complementation of defects in $\beta$-1,3-glucan synthase activity of the the previously isolated Saccharomyces cerevisiae mutant LP0353, which displays a number of cell wall defects at restrictive temperature. Disruption of the GBG1 gene did not affect cell viability or growth rate, but did cause alterations in cell wall synthesis enzyme activities: reduction of $\beta$-1,3-glucan synthase and chitin synthase III activities as well as increased chitin synthase I and II activities. GBG1 disruption also showed altered cell wall composition as well as susceptibility toward cell wall inhibitors such as Zymolyase, Calcofluor white, and Nikkomycin Z. These results indicate that GBG1 plays a role in cell wall biogenesis in S. cerevisiae.

Restoration of Saccharomyces cerevisiae coq7 Mutant by a Neurospora crassa Gene (Neurospora crassa 유전자에 의한 Saccharomyces cerevisiae coq7 돌연변이의 회복)

  • 김은정;김상래;이병욱
    • Journal of Life Science
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    • v.13 no.6
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    • pp.933-942
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    • 2003
  • CoenzymeQ is a quinone derivative with a long isoprenoid side chain. It transports electrons in the respiratory chain located in the inner mitochondrial membrane of eukaryotes and the plasma membrane of prokaryotes. It also functions as an antioxidant. Saccharomyces cerevisine coq mutants, that are deficient coenzyme Q biosynthesis fail to aerobically grow. They are not able to grow on non-fermentable carbon sources, such as glycerol, either The putative $coq^{-7}$ gene involved in coenzyme Q biosynthesis of Neurospora crassa was cloned and used for complementation of S. cerevisiae coq7 mutant. The predicted amino acid sequence of N. crassa COQ7 showed about 58% homology with Coq7p of S. cerevisiae. The growth rate of S. cerevisiae $coq^7$ mutant transformed with the N. crassa $coq^{-7}$ gene was restored to the wild-type level. The complemented 5. cerevisiae strain was able to grow with glycerol as a sole carbon source and showed less sensitivities to linolenic acid, a polyunsaturated fatty acid.

The Studies on the Heterogenous Gene Expression in Schizophyllum commune (치마버섯에서 이형 유전자 발현에 관한 연구)

  • Park, Dong-Chul;Kim, Hyun-Jeong;Kim, Ok-Mi;Bae, Jun-Tae;Park, Sun-Hee;Lee, Byeung-Hun;Lee, Kap-Rang
    • The Korean Journal of Mycology
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    • v.26 no.1 s.84
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    • pp.103-107
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    • 1998
  • The trp2 gene encoding trifunctional enzyme in Coprinus cinereus was investigated the expression in the heterothallic mushroom species. To identify the homology of trp2 gene to Schizophyllum commune and Pleurotus ostreatus, southern hybridization was performed with plasmid pHIONA8 containing C. cinereus trp2 gene as a probe, which resulted in a strong signal indicating an homologous sequence to the chromosomal DNA of S. commune. About 50 transformants per dish was appeared in the complementation test by pHIONA8 using S. commune tryptophan auxotroph as host. In the mating test between transformants and other mating type alleles, the fruiting body of S. commune was formed at $30^{\circ}C$ in $2{\sim}3$ weeks.

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The Effects of Fashion Involvement on Self-Satisfaction by Conspicuous Consumption Tendency Groups (과시소비성향집단별 패션관여가 자기만족도에 미치는 영향)

  • Park, Hyun-Ju;Park, Sook-Hyun
    • Journal of the Korean Society of Clothing and Textiles
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    • v.36 no.11
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    • pp.1162-1173
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    • 2012
  • This study classifies conspicuous consumption groups and the difference of fashion involvement and selfsatisfaction by each group. It also examined the effect of fashion involvement on self-satisfaction by each group. A questionnaire method was used for the study method and the subjects of the study were females in their 20s-50s. A total of 580 sets of questionnaires were distributed and 554 sets were used for the final analysis. Data were analyzed by factor analysis, t-test, ANOVA, factor analysis, cluster analysis, Cronbach's alpha coefficients, and multiple regression analysis. The results of this study were as follows: First, this study classified 4 groups of active conspicuous consumption, the group of passive conspicuous consumption, the group of syntonic conspicuous consumption and the group pursuing individuality & frugal consumption. Second, as a result of the examination of the impact of fashion involvement for each group with a propensity for conspicuous consumption on their self-satisfaction, it was found that the sex appeal of fashion involvement had no significant impact on the economic satisfaction in the group of active conspicuous consumption, and had no significant impact on all elements of self-satisfaction in the group of passive conspicuous consumption. It was also found that social symbolism had a negative impact on satisfaction with looks in the group of syntonic conspicuous consumption, and the physical complementation and directions of looks had a negative impact on satisfaction with living, the social symbolism on satisfaction with looks and the syntone on satisfaction with looks in the group of pursuing individuality & frugal consumption.