• 제목/요약/키워드: colony array

검색결과 14건 처리시간 0.026초

Gallic acid가 Lipopolysaccharide로 활성화된 마우스 대식세포의 케모카인과 성장인자 생성에 미치는 영향 (Inhibitory Effect of Gallic acid on Production of Chemokine and Growth Factor in Mouse Macrophage Stimulated by Lipopolysaccharide)

  • 박완수
    • 동의생리병리학회지
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    • 제24권4호
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    • pp.586-591
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    • 2010
  • Chemokine and Growth Factor are major mediumtors of immuno-inflammatory pathway. The purpose of this study is to investigate whether productions of Chemokine and Growth Factor in lipopolysaccharide (LPS)-induced mouse macrophage RAW 264.7 cells are modulated by Gallic acid (GA), which is easily founded in tannin-containing natural materials such as red wine, green tea, grape juice, and Corni Fructus. Productions of Chemokine and Growth Factor were analyzed by High-throughput Multiplex Bead based Assay with Bio-plex Suspension Array System based on $xMAP^{(R)}$ (multi-analyte profiling beads) technology. At first, cell culture supernatant was obtained after treatment with LPS and GA for 24 hour. Then, the antibody-conjugated beads were added and incubated for 30 minutes. After incubation, detection antibody was added and incubated for 30 minutes. And Strepavidin-conjugated Phycoerythrin (SAPE) was added. After incubation for 30 minutes, the level of SAPE fluorescence was analyzed on Bio-plex Suspension Array System. Based on fluorescence intensity, concentrations of Chemokine and Growth Factor were determined. The results of the experiment are as follows. GA significantly inhibited the production of interferon-inducible protein (IP)-10, keratinocyte-derived chemokine(KC), and vascular endothelial growth factor (VEGF) in LPS-induced RAW 264.7 cells at the concentration of 25, 50, 100, 200 uM (p<0.05). GA significantly inhibited the production of monocyte chemoattractant protein-1(MCP-1) and macrophage-colony stimulating factor(M-CSF) in LPS-induced RAW 264.7 cells at the concentration of 50, 100, 200 uM (p<0.05). GA diminished the production of granulocyte macrophage-colony stimulating factor (GM-CSF) in LPS-induced RAW 264.7 cells. But GA did not show the inhibitory effect on the production of leukemia inhibitory factor (LIP) and macrophage inflammatory protein (MIP)-2 in LPS-induced RAW 264.7 cells. These results suggest that GA has the immuno-modulating activity related with its inhibitory effects on the production of IP-10, KC, MCP-1, VEGF, and M-CSF in LPS-induced macrophages.

상처와 효모추출물 처리조건에서 유발되는 야생벼 유전자 스크린 (Genes of Wild Rice (Oryza grandiglumis) Induced by Wounding and Yeast Extract)

  • Shin, Sang-Hyun;Im, Hyun-Hee;Lee, Jai-Heon;Kim, Doh-Hoon;Chung, Won-Bok;Kang, Kyung-Ho;Cho, Sung-Ki;Shin, Jeong-Sheop;Chung, Young-Soo
    • 생명과학회지
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    • 제14권4호
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    • pp.650-656
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    • 2004
  • 야생벼의 일종인 Oryza grandiglumis (CCDD, 2n=48)는 도열병, 잎집무늬마름병, 흰빛잎마름병, 그리고 벼멸구와 같은 병충해에 저항성을 가지는 것으로 알려져 있다. 이와 같은 곰팡이와 해충에 반응하여 차별 발현하는 유전자를 클로닝 하기 위하여 상처처리와 yeast extract를 Oryza grandiglumis에 0시간과 24시간 각각 처리하였다. 유전자의 클로닝을 위하여 희귀 발현유전자의 클로닝에 효율적인 것으로 알려진 Suppression Subtractive Hybridization (SSH) 방법이 처리 후 24시간 된 식물을 재료로 사용되었다. 그 결과, 776개의 cDNA clones이 확보되었으며, 유전자 발현의 진위여부를 빠르게 스크린하기 위하여 colony array가 수행되었다. 115개의 colony가 positive로 판명되었고, 이들의 평균 insert size는 400 bp에서 700 bp에 이르렀고, 이들에 대한 염기서열 분석이 수행되었다. 염기서열 분석 결과, 68개 clone들이 알려진 기능의 유전자와 homology를 나타냈으며, 이중에서 16개 clone이 일차대사에 관련된 것과 유사성을, 5개가 plant retrotransposon과 유사성을, 5개가 식물 방어기작 관련 metallothionein-like gene과 염기서열 유사성을 보였다. 이외에 다양한 유전자들이 아미노산 합성관련, membrane transport, signal transduction등에 관여하는 유전자들과 상동성을 나타내었다. 이들 유전자중에서 4 개의 클론(ogwfi-161, ogwfi-646, ogwfi-663, ogwfi-695)들이 선발되었고 이들에 대한 Northern 분석이 수행되었다. Northern 분석 결과 ogwfi-161, ogwfi-646, ogwfi-663, ogwfi-695는 wounding과 yeast extract처리 에 의한 차별 발현이 확인되었다. 이상의 결과를 종합하여 볼 때, SSH방법은 병충해등과 같은 조건에 의해 차별 발현되는 유전자들을 빠른 시간 내에 다량으로 발굴할 수 있는 매우 효율적인 방법이라고 생각된다.

Caffeine이 지방세포주 3T3-L1 분화에 미치는 영향: 영양유전체학적 접근 (The Effect of Caffeine on 3T3-L1 Adipocyte Differentiation : A Nutrigenomical Approach)

  • 김미자;김영옥;정주호;김종우;김혜경
    • Journal of Nutrition and Health
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    • 제38권8호
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    • pp.649-655
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    • 2005
  • Nutrigenomics refers to research that investigates the interaction between nutrition and the human genome. Caffeine in tea and coffee is widely and routinely consumed by people. This study was performed to confirm the effect of caffeine treatment on the gene expression and cytokine profiling in 3T3-L1 adipocyte cells using microarray and protein array methodology. Treatment of caffeine in 3T3-L1 adipocyte cells increased expression of several genes related with obesity including adipocyte C1Q and collagen domain containing (ACDC), Adipsin (ADN), uncoupling protein 3(UCP3), while glyceraldehyde-3-phosphate dehydrogenase (GAPDH), which is known as lipid storage enzyme, was decreased by caffeine treatment. Furthermore, cytokines, such as interleukin-3 (IL-3), interleukin-12(IL-12), interleukin-13 (IL-13), granulocyte colony stimulating factor (GCSF), granulocyte macrophage colony stimulating factor (GM-CSF) and vascular endothelial growth factor (VEGF), were decreased in caffeine treated 3T3-L1 adipocyte cells. These results provided interesting information about the genes related with caffeine and cytokine expression profiling in obesity.

금은화(金銀花)물추출물이 마우스 대식세포의 사이토카인 생성에 미치는 영향 (Effects of Flos Lonicerae Japonicae Water Extract on Cytokine Production in RAW 264.7 Mouse Macrophages)

  • 박완수
    • 동의생리병리학회지
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    • 제36권2호
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    • pp.66-72
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    • 2022
  • Flos Lonicerae Japonicae (the flower buds of Lonicera japonica Thunberg) has been used as an antibacterial and antiviral drug in Korean Medicine. The aim of this study is to evaluate the effect of Flos Lonicerae Japonicae water extract (FL) on the production of cytokines in RAW 264.7 mouse macrophages stimulated by lipopolysaccharide (LPS). After 24 h treatment, the production of various cytokines from RAW 264.7 was measured with multiplex cytokine assay using Bio-Plex 200 suspension array system. FL at concentrations of 50, 100, and 200 ㎍/mL significantly inhibited productions of tumor necrosis factor-α, macrophage inflammatory protein (MIP)-1β, and MIP-2 in LPS-stimulated RAW 264.7 cells; FL at concentrations of 100 and 200 ㎍/mL significantly inhibited productions of leukemia inhibitory factor, LIX (CXCL5), and RANTES in LPS-stimulated RAW 264.7 cells; FL at concentrations of 200 ㎍/mL significantly inhibited productions of granulocyte-macrophage colony-stimulating factor and macrophage colony-stimulating factor in LPS-stimulated RAW 264.7 cells; FL at concentrations of 50 and 100 ㎍/mL significantly increased productions of interleukin (IL)-10 in LPS-stimulated RAW 264.7 cells; FL at concentrations of 50, 100, and 200 ㎍/mL significantly increased productions of IL-6 and interferon gamma-induced protein-10 in LPS-stimulated RAW 264.7 cells; FL at concentrations of 100 and 200 ㎍/mL significantly increased productions of monocyte chemoattractant protein-1 in LPS-stimulated RAW 264.7 cells. Taken together, these data mean that FL might modulate productions of cytokines, chemokines, and growth factor in LPS-stimulated macrophages. Further study needs to verify the exact mechanism for modulatory activities of FL with macrophages.

Paeonol에 의한 표피줄기세포 활성화 (Activating the Proliferation of Keratinocyte Stem Cells by Paeonol, a Compound from Natural Herb)

  • 김도형;김효진;여혜린;이천구;이상화
    • 대한화장품학회지
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    • 제42권2호
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    • pp.145-152
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    • 2016
  • 피부의 가장자리에 위치한 표피는 개체의 생존에 절대적으로 중요하며, 기저막에 위치한 표피줄기세포에 의해 평생 끊임없이 재생되고 있다. 표피줄기세포는 한정된 세포분열을 진행하고 각질세포로 분화하는 transit amplifying (TA)세포를 만들어 냄으로써 오랜 기간 재생에 필요한 많은 각질세포를 만들어 낼 수 있다. 본 연구에서는 표피줄기세포 세포분열 활성화 화합물로 목단으로부터 추출한 페오놀(paeonol)을 350여 개의 화합물들로부터 검색해 냈다. 이러한 세포분열 활성화 효능은 표피줄기세포 특이적으로 나타나며, 표피줄기세포의 지표로 알려진 p63 단백질의 발현 경향은 페오놀을 처리한 표피줄기세포에서 변화하지 않음을 유세포분석법으로 확인하였다. 콜로니형성 분석에서는 페오놀을 처리한 표피줄기세포가 1.3배 이상 더 나은 콜로니 형성능을 보여 주었다. 그리고 PCR array 분석을 통해서 페오놀의 효능은 여러 신호전달에 의해 나타남을 알 수 있었다. 이러한 결과들로부터 페오놀이 줄기세포성에 영향을 주지 않고 표피줄기세포의 재생능력을 향상시키므로 표피줄기세포 활성화 물질로서 화장품 소재로 적용될 수 있을 것으로 판단된다.

바실러스균 발효황금약침액이 마우스 대식세포의 케모카인 및 생성인자 생성에 미치는 영향 (The Effect of Bacillus-Fermented Scutellariae Radix Acupuncture Solution on Chemokine and Growth Factor Production in Mouse Macrophage Stimulated by Lipopolysaccharide)

  • 박완수
    • Korean Journal of Acupuncture
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    • 제27권3호
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    • pp.109-118
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    • 2010
  • Objectives : The purpose of this study is to investigate the effect of Bacillus-fermented Scutellariae Radix acupuncture solution (SB) on chemokine and growth factor production in RAW 264.7 mouse macrophages stimulated by lipopolysaccharide (LPS). Methods : Productions of chemokine and growth factor were measured by High-throughput Multiplex Bead based Assay with Bio-plex Suspension Array System based on xMAP$^{(R)}$ technology. Firstly, cell culture supernatant was obtained after treatment with LPS (1 ${\mu}g$/mL) and SB for 24 hours. Then, it was incubated with the antibody-conjugated beads for 30 minutes. Detection antibody was then added and incubated for 30 minutes. After incubated for 30 minutes, strepavidin-conjugated phycoerythrin (SAPE) was added. After another 30 minutes incubation, the level of SAPE fluorescence was analyzed in Bio-plex Suspension Array System. Results : The results of the experiment are as follows. 1. SB significantly inhibited the LPS-induced production of vascular endothelial growth factor (VEGF), interferon-inducible protein (IP)-10, and granulocyte-colony stimulating factor (G-CSF) at the concentration of 25, 50, 100, and 200 ${\mu}g$/mL in RAW 264.7 cells (P < 0.05). 2. SB significantly inhibited the LPS-induced production of Eotaxin at the concentration of 25, 100, and 200 ${\mu}g$/mL in RAW 264.7 cells (P < 0.05). 3. SB significantly inhibited the LPS-induced production of MIP-$1\alpha$ at the concentration of 25 and 100 ${\mu}g$/mL in RAW 264.7 cells (P < 0.05). Conclusions : These results suggest that SB has immuno-modulatory property related with its inhibition of VEGF, IP-10, G-CSF, and Eotaxin production in macrophages.

Vortex-induced reconfiguration of a tandem arrangement of flexible cylinders

  • Lee, Sang Joon;Kim, Jeong Jae;Yeom, Eunseop
    • Wind and Structures
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    • 제21권1호
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    • pp.25-40
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    • 2015
  • Oscillating motions of flexible cylinders are associated to some extent with the aerodynamic response of plants. Tandem motions of reeds with flexible stems in a colony are experimentally investigated using an array of flexible cylinders made of polydimethylsiloxane (PDMS). Consecutive images of flexible cylinders subjected to oncoming wind are recorded with a high-speed camera. To quantify oscillating motions, the average bending angle and displacement of flexible cylinders are evaluated using point-tracking method and spectral analysis. The tandem motions of flexible cylinders are closely related to the flow characteristics around the cylinders. Thus, the dynamic motions of a tandem arrangement of flexible cylinders are investigated with varying numbers of cylinders arranged in-line, numbers of cylinders in a group (behaving like a single body), and Reynolds numbers (Re). When the number of cylinders in a group increases, the damping effect caused by the support of downstream cylinders is pronounced. These results would be provide useful information on the tandem-arranged design of complex structures and energy harvesting devices.

Approach for Cloning and Characterization of Blue/White Flower Color Specific cDNA Clones from Two Commelina Species

  • Lee Gunho;Yeon Mooshik;Hur Yoonkang
    • Journal of Plant Biotechnology
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    • 제7권1호
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    • pp.45-50
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    • 2005
  • To clone blue and white flower color specific genes, mRNA differential display was carried out with two different Commelina species, C. communis Linne for blue color and C. coreana Leveille for. leucantha Nakai for white color. Fifty two and 100 cDNA clones specific for blue or white flower color, respectively, were ranging from 200 to 700 bp in size. From the reverse northern blot analysis, 12 and 7 positive clones were selected for blue and white flower, respectively. These clones appear to be novel cDNAs for these Commelina plants, but not color specific. This finding was supported by the northern blot analysis. However, two clones, B18 and B19, derived from blue flowered Commelina were highly expressed than in the white Commelina species, implying that further study will be valuable. The results indicated that both mRNA display experiment and dot blot analysis may not sensitive enough to clone color-determining gene from the plant, leading to explore more advanced method, like high-density colony array study (HDCA).

Effects of Red Ginseng-Ejung-tang Water Extract on Cytokine Production in LPS-induced Mouse Macrophages

  • Park, Wansu
    • 대한한의학회지
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    • 제33권4호
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    • pp.42-49
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    • 2012
  • Objectives: The purpose of this study was to investigate effects of Red Ginseng-Ejung-tang Water Extract (ER) on cytokine production in RAW 264.7 mouse macrophages stimulated by lipopolysaccharide (LPS). Methods: Levels of various cytokines such as interleukin (IL)-6, IL-10, IL-2, IL-12p70, vascular endothelial growth factor (VEGF), monocyte chemoattractant protein (MCP)-1, macrophage inflammatory protein (MIP)-2, keratinocyte-derived chemokine (KC), tumor necrosis factor (TNF)-alpha, granulocyte macrophage colony-stimulating factor (GM-CSF) were measured by high-throughput multiplex bead array cytokine assay based on xMAP (multi-analyte profiling beads) technology. Results: ER significantly decreased levels of IL-6, IL-10, IL-2, IL-12p70, VEGF, and MCP-1 for 24 hrs incubation at the concentrations of 25, 50, and $100{\mu}g/mL$ in LPS-induced RAW 264.7 cells (P < 0.05). But ER did not exert significant effects on production of MIP-2, KC, TNF-${\alpha}$, and GM-CSF in LPS-induced RAW 264.7 cells. Conclusions: These results suggest that ER has an anti-inflammatory property related with its inhibition of cytokine production in LPS-induced macrophages.

SETDB1 genomic DNA 를 표적하는 TALEN construct 제작 및 분석 (TALEN Constructs and Validation for Targeting of SETDB1 Genomic DNA)

  • 노희정;강윤성;김근철
    • 생명과학회지
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    • 제24권12호
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    • pp.1269-1275
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    • 2014
  • TALEN은 특정유전자를 표적 하여 knock-out 시킬 수 있는 새로운 개념의 유전자 클로닝 방법이다. TALEN 플라스미드에는 DNA binding 도메인과 Fok1 절단효소 기능이 융합되어 있기 때문에, genomic DNA 의 어느 부위라도 결합할 수 있고, 표적 염기서열을 절단하여 유전자 돌연변이를 유도할 수 있다. 본 연구에서 우리는 SETDB1 HMTase 유전자의 단백질 개시코돈 과 프로모터 -25 upstream 부위를 표적 하는 두 종의 TALEN constructs 를 제작하였다. 이를 위하여 두 단계의 클로닝이 진행되었다. 첫 번째는 모듈벡터에서 pFUS배열벡터로 표적서열을 옮겨 콜로니 PCR을 통해 smear밴드와 Esp1 제한 효소를 이용하여 약 1 kb의 insert가 들어 있음을 확인하였다. 두 번째는 배열 벡터로부터 TALEN 발현벡터로 옮기는 과정을 진행하였으며, 염기서열분석을 통해 확인하였다. 그 결과 최초의 고안된 모듈벡터 서열들이 약 100 bp 간격으로 배열되어 있음을 확인하였다. 제작된 TALEN-DBEX2 construct는 transfection을 통해 SETDB1의 발현이 사라지는 것을 확인하였고, T7E1 분석을 통하여 표적부위에서 돌연변이가 발생하였음을 추정할 수 있었다. 한편, TALEN-DBPR25 transfection을 통하여서도 SETDB1의 발현이 감소하는 현상을 확인 하였다. DBEX2, DBPR25를 이입시킨 HeLa 세포에서 세포 형태가 길어지는 현상을 관찰할 수 있었다. 그러므로 단백질 개시코돈 또는 -25 upstream을 표적 하는 TALEN knock-out 방법은 SETDB1 유전자의 기능연구에 매우 유용하다고 사료된다.