• Title/Summary/Keyword: coding sequences

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Query with SUM Aggregate Function on Encrypted Floating-Point Numbers in Cloud

  • Zhu, Taipeng;Zou, Xianxia;Pan, Jiuhui
    • Journal of Information Processing Systems
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    • v.13 no.3
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    • pp.573-589
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    • 2017
  • Cloud computing is an attractive solution that can provide low cost storage and powerful processing capabilities for government agencies or enterprises of small and medium size. Yet the confidentiality of information should be considered by any organization migrating to cloud, which makes the research on relational database system based on encryption schemes to preserve the integrity and confidentiality of data in cloud be an interesting subject. So far there have been various solutions for realizing SQL queries on encrypted data in cloud without decryption in advance, where generally homomorphic encryption algorithm is applied to support queries with aggregate functions or numerical computation. But the existing homomorphic encryption algorithms cannot encrypt floating-point numbers. So in this paper, we present a mechanism to enable the trusted party to encrypt the floating-points by homomorphic encryption algorithm and partial trusty server to perform summation on their ciphertexts without revealing the data itself. In the first step, we encode floating-point numbers to hide the decimal points and the positive or negative signs. Then, the codes of floating-point numbers are encrypted by homomorphic encryption algorithm and stored as sequences in cloud. Finally, we use the data structure of DoubleListTree to implement the aggregate function of SUM and later do some extra processes to accomplish the summation.

A Method for Improvement of Coding Efficiency in Scalability Extension of H.264/AVC (H.264/AVC Scalability Extension의 부호화 효율 향상 기법)

  • Kang, Chang-Soo
    • 전자공학회논문지 IE
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    • v.47 no.2
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    • pp.21-26
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    • 2010
  • This paper proposed an efficient algorithm to reduce the amount of calculation for Scalability Extension which takes a great deal of the operational time in H.264/AVC. This algorithm decides a search range according to the direction of predicted motion vector, and then performs an adaptive spiral search for the candidates with JM(Joint Model) FME(Fast Motion Estimation) which employs the rate-distortion optimization(RDO) method. Experimental results by applying the proposed method to various video sequences showed that the process time was decreased up to 80% comparing to the previous prediction methods. The degradation of video Quality was only from 0.05dB to 0.19dB and the compression ratio decreased as small as 0.58% in average. Therefore, we are sure that the proposed method is an efficient method for the fast inter prediction.

Two new species of Trichoderma isolated from commercially grown oyster mushroom, Pleurotus ostreatus (oral)

  • Park, Myung-Soo;Seo, Geon-Sik;Bae, Kyung-Sook;Yu, Seung-Hun
    • Proceedings of the Korean Society of Plant Pathology Conference
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    • 2003.10a
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    • pp.127.1-127
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    • 2003
  • We describe two new Trichoderma species associated with oyster mushroom in Korea. Trichoderma green mould has been one of the most serious diseases of oyster mushroom in Korea. Of these the predominant species are two unrecorded species. We designed as Trichoderma sp. Korean type 1 (Th K1) and Trichoderma sp. Korean type 2 (Th K2), respectively. Th K1 and Th K2 can be distinguished from previously reported Trichoderma species as well as each other in morphological characteristics including growth rate at 35$^{\circ}C$, colony morphology, conidia shape and branch pattern of phialides. Sequence of the ITS region of rDNA, the protein coding translation elongation factor gene(EF-1${\alpha}$), and RNA polymeraseII (RPB2) not only clearly separated Trichoderma sp. Korean types from their closely related T. harzianum biotype but also distinguished them from each other. Analyses of the EF-1${\alpha}$ and RPB2 sequences were found to be more useful for establishing systematic relationships among Trichoderma isolates than those of the ITS sequence. Based on the results of morphological and molecular characteristics. We propose the two Trichoderma sp. Korean types as the new species

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Transposable Elements and Genome Size Variations in Plants

  • Lee, Sung-Il;Kim, Nam-Soo
    • Genomics & Informatics
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    • v.12 no.3
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    • pp.87-97
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    • 2014
  • Although the number of protein-coding genes is not highly variable between plant taxa, the DNA content in their genomes is highly variable, by as much as 2,056-fold from a 1C amount of 0.0648 pg to 132.5 pg. The mean 1C-value in plants is 2.4 pg, and genome size expansion/contraction is lineage-specific in plant taxonomy. Transposable element fractions in plant genomes are also variable, as low as ~3% in small genomes and as high as ~85% in large genomes, indicating that genome size is a linear function of transposable element content. Of the 2 classes of transposable elements, the dynamics of class 1 long terminal repeat (LTR) retrotransposons is a major contributor to the 1C value differences among plants. The activity of LTR retrotransposons is under the control of epigenetic suppressing mechanisms. Also, genome-purging mechanisms have been adopted to counter-balance the genome size amplification. With a wealth of information on whole-genome sequences in plant genomes, it was revealed that several genome-purging mechanisms have been employed, depending on plant taxa. Two genera, Lilium and Fritillaria, are known to have large genomes in angiosperms. There were twice times of concerted genome size evolutions in the family Liliaceae during the divergence of the current genera in Liliaceae. In addition to the LTR retrotransposons, non-LTR retrotransposons and satellite DNAs contributed to the huge genomes in the two genera by possible failure of genome counter-balancing mechanisms.

Post-processing of 3D Video Extension of H.264/AVC for a Quality Enhancement of Synthesized View Sequences

  • Bang, Gun;Hur, Namho;Lee, Seong-Whan
    • ETRI Journal
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    • v.36 no.2
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    • pp.242-252
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    • 2014
  • Since July of 2012, the 3D video extension of H.264/AVC has been under development to support the multi-view video plus depth format. In 3D video applications such as multi-view and free-view point applications, synthesized views are generated using coded texture video and coded depth video. Such synthesized views can be distorted by quantization noise and inaccuracy of 3D wrapping positions, thus it is important to improve their quality where possible. To achieve this, the relationship among the depth video, texture video, and synthesized view is investigated herein. Based on this investigation, an edge noise suppression filtering process to preserve the edges of the depth video and a method based on a total variation approach to maximum a posteriori probability estimates for reducing the quantization noise of the coded texture video. The experiment results show that the proposed methods improve the peak signal-to-noise ratio and visual quality of a synthesized view compared to a synthesized view without post processing methods.

Efficient LDPC-Based, Threaded Layered Space-Time-Frequency System with Iterative Receiver

  • Hu, Junfeng;Zhang, Hailin;Yang, Yuan
    • ETRI Journal
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    • v.30 no.6
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    • pp.807-817
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    • 2008
  • We present a low-density parity-check (LDPC)-based, threaded layered space-time-frequency system with emphasis on the iterative receiver design. First, the unbiased minimum mean-squared-error iterative-tree-search (U-MMSE-ITS) detector, which is known to be one of the most efficient multi-input multi-output (MIMO) detectors available, is improved by augmentation of the partial-length paths and by the addition of one-bit complement sequences. Compared with the U-MMSE-ITS detector, the improved detector provides better detection performance with lower complexity. Furthermore, the improved detector is robust to arbitrary MIMO channels and to any antenna configurations. Second, based on the structure of the iterative receiver, we present a low-complexity belief-propagation (BP) decoding algorithm for LDPC-codes. This BP decoder not only has low computing complexity but also converges very fast (5 iterations is sufficient). With the efficient receiver employing the improved detector and the low-complexity BP decoder, the proposed system is a promising solution to high-data-rate transmission over selective-fading channels.

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Molecular Cloning and Sequence Analysis of Human GM3 Synthase (hST3Gal V)

  • Kim, Kyung-Woon;Kim, Kyoung-Sook;Kim, Cheorl-Ho;Kim, June-Ki;Lee, Young-Choon
    • BMB Reports
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    • v.32 no.4
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    • pp.409-413
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    • 1999
  • The cDNA encoding CMP-NeuAc:lactosylceramide ${\alpha}2$,3-sialyltransferase (GM3 synthase) was isolated from a human fetal brain cDNA library using sequence information obtained from amino acid sequences found in the conserved regions of the previously-cloned mouse GM3 synthase (mST3Gal V) and human sialyltransferases. The cDNA sequence included an open reading frame coding for 362 amino acids, and the primary structure of this enzyme predicted all the structural features characteristic of other sialyltransferases, including a type II membrane protein topology and both sialylmotifs. Comparative analysis of this cDNA with mST3Gal V showed 85% and 86% identity of the nucleotide and amino acid residues, respectively. The expression of this gene is highly restricted in both human fetal and adult tissues.

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Suppression of CDK2 expression by siRNA induces cell cycle arrest and cell proliferation inhibition in human cancer cells

  • Long, Xiang-E.;Gong, Zhao-Hui;Pan, Lin;Zhong, Zhi-Wei;Le, Yan-Ping;Liu, Qiong;Guo, Jun-Ming;Zhong, Jiu-Chang
    • BMB Reports
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    • v.43 no.4
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    • pp.291-296
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    • 2010
  • Cyclin-dependent kinase 2 (CDK2) is a member of serine/threonine protein kinases, which initiates the principal transitions of the eukaryotic cell cycle and is a promising target for cancer therapy. The present study was designed to inhibit cdk2 gene expression to induce cell cycle arrest and cell proliferation suppression. Here, we constructed a series of RNA interference (RNAi) plasmids which can successfully express small interference RNA (siRNA) in the transfected human cells. The results showed that the RNAi plasmids containing the coding sequences for siRNAs down-regulated the cdk2 gene expression in human cancer cells at the mRNA and the protein levels. Furthermore, we found that the cell cycle was arrested at G0G1 phases and the cell proliferation was inhibited by different siRNAs. These results demonstrate that suppression of CDK2 activity by RNAi may be an effective strategy for gene therapy in human cancers.

Mitochondrial cox1 and cob sequence diversities in Gelidium vagum (Gelidiales, Rhodophyta) in Korea

  • Yoon, Kyung Ju;Kim, Kyeong Mi;Boo, Ga Hun;Miller, Kathy Ann;Boo, Sung Min
    • ALGAE
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    • v.29 no.1
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    • pp.15-25
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    • 2014
  • The number of species of non-native and invasive marine algae is growing, with concomitant public concern about native ecosystems and coastlines. Gelidium vagum, recently introduced from northeast Asia to Europe and North America, commonly occurs from the intertidal to subtidal zones in Korea, China, and Japan. To investigate the level of genetic diversity of native populations, we analyzed mitochondrial cox1 and cob from 108 specimens of G. vagum from Korea, China, eastern Russia, including from the Netherlands and USA. The haplotype network of individual and cox1 + cob datasets revealed no genetic structure in local populations, suggesting genetic flow between Korean populations. Our results corroborate a typical pattern of genetic diversity for introduced species, with low levels in introduced populations and high levels in native populations. All haplotypes were shared between the Netherlands and USA, but not between Korea and the Netherlands / USA except cox1. Additional sampling will identify donor populations in native northeast Asian waters. This is the first report of the utility of the mitochondrial coding cob sequences in red algae.

A Video Sequence Coding Using Dynamic Selection of Unrestricted Motion Vector Mode in H.263 (H.263의 비제한 움직임 벡터 모드의 동적 선택을 이용한 영상 부호화)

  • 박성한;박성태
    • Journal of the Korea Computer Industry Society
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    • v.2 no.8
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    • pp.1075-1088
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    • 2001
  • In this paper, we propose a method for dynamic selection of unrestricted motion vector(UMV) or default prediction mode(DPM) in H.263 bit stream. For this, we use the error of compensated image and the magnitude of motion vector. In the proposed strategy, the UMV mode is dynamically applied in a frame according to average magnitude of motion vector and error of compensated image. This scheme has improved the quality of image compared to the fixed mode UMV or DPM only. Number of searching points are greatly reduced when comparing to UMV The proposed method is more profitable to long video sequences having camera movement locally.

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